Laurens F., Aranzana M.J., Arus P., Bonany J., Corelli L.Patocchi A., Peil,  A., Quilot B., Stella A., Troillard V., Velas...
Context (1)<br />FruitBreedingprogrammes<br />Numerous<br />Similar objectives :<br />Pest and diseaseresistance, <br />Fr...
Context (2)<br />Geneticstudies<br />Mapping of major genes and QTL<br />Resistance<br />FruitQuality<br />Treearchitectur...
Context (3)<br />Quite a lot of research<br />Results, QTL’s, <br />BUT …<br />NO (few) cases of usage in selection<br />
Mainreasons<br />
FRUITBREEDOMICS aims<br />Development + use of molecular tools (SNP, Full transcript chips) / internationalcollaboration<b...
Project structure<br />EUROPEAN BREEDING PLATFORM<br />WP1- Increasingefficiency of markerassistedbreeding<br />WP2- Estab...
Project structure<br />WP1- Increasingefficiency of markerassistedbreeding<br />WP1-BREEDING<br /><ul><li>Breedingstrategies
Fine mapping
PILOT STUDIES
Pipeline for MAB
Breeding interface to DB</li></li></ul><li>Project structure<br />WP2- Establishment of pre-breeding material<br />WP2- PR...
Conventional Pre-breeding
Fast pre-breeding</li></li></ul><li>Project structure<br />WP3-  Identification and characterization of QTL fordiseaseresi...
QTL new traits
Fine mapping QTL
Geneticdiversity in EU breedingprograms
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FruitBreedomics general presentation

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General presentation about the european research project FRUITBREEDOMICS on genomics and fruit breeding of fruit tree species.
www.fruitbreedomics.com

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FruitBreedomics general presentation

  1. 1. Laurens F., Aranzana M.J., Arus P., Bonany J., Corelli L.Patocchi A., Peil, A., Quilot B., Stella A., Troillard V., Velasco R., van de Weg E, …<br />The new EU project FruitBreedomics: an integrated approach for increasing breeding efficiency in apple and peach<br />
  2. 2. Context (1)<br />FruitBreedingprogrammes<br />Numerous<br />Similar objectives :<br />Pest and diseaseresistance, <br />Fruit quality, <br />Regularcropping<br />....<br />Lowgeneticvariabilitywithingenitor pool<br />Empiricalapproaches<br />
  3. 3. Context (2)<br />Geneticstudies<br />Mapping of major genes and QTL<br />Resistance<br />FruitQuality<br />Treearchitecture<br />…<br />Functionalgenomics<br />Candidate genes (ACO, ACS, Exp7, …)<br />cDNA chips<br />Gene cloning (Vf/apple; Mapeach, …)<br />… Wholegenomesequencesavailableforapple, peach, and … strawberry<br />
  4. 4. Context (3)<br />Quite a lot of research<br />Results, QTL’s, <br />BUT …<br />NO (few) cases of usage in selection<br />
  5. 5. Mainreasons<br />
  6. 6. FRUITBREEDOMICS aims<br />Development + use of molecular tools (SNP, Full transcript chips) / internationalcollaboration<br />Betterknowledge/genetics + genomics of majoragronomictraits + allelicdiversity<br />Tofill in the gap betweenGenetics/Genomics and breeding<br />Material + tools + methodologies /breeders<br />(within and outsidetheconsortium)<br />
  7. 7.
  8. 8. Project structure<br />EUROPEAN BREEDING PLATFORM<br />WP1- Increasingefficiency of markerassistedbreeding<br />WP2- Establishment of pre-breeding material<br />DIVERSITY AND QTL MAPPING PILAR<br />WP3- Identification and characterization of QTL fordiseaseresistance and fruitqualitybythePedigreeBasedApproach<br />WP4- Exploringthegenotypic and phenotypicdiversity in apple and peachgermplasm and itsexploitationbyAssociationGenomicsApproach<br />WP8- OUTREACH<br />WP9- MANAGEMENT<br />WP5- Understandingthegeneticsunderlying novel traits and providingphenotypictools<br />TOOLS AND DATA MANAGEMENT PILAR<br />WP6- Development of marker/gene arraysforhighthroughputgenotyping<br />WP7- Tools and Data management<br />
  9. 9. Project structure<br />WP1- Increasingefficiency of markerassistedbreeding<br />WP1-BREEDING<br /><ul><li>Breedingstrategies
  10. 10. Fine mapping
  11. 11. PILOT STUDIES
  12. 12. Pipeline for MAB
  13. 13. Breeding interface to DB</li></li></ul><li>Project structure<br />WP2- Establishment of pre-breeding material<br />WP2- PRE-BREEDING<br /><ul><li>Material evaluation
  14. 14. Conventional Pre-breeding
  15. 15. Fast pre-breeding</li></li></ul><li>Project structure<br />WP3- Identification and characterization of QTL fordiseaseresistance and fruitqualitybythePedigreeBasedApproach<br />WP3-PEDIGREE BASED ANALYSIS<br /><ul><li>Adaptation of Flex software
  16. 16. QTL new traits
  17. 17. Fine mapping QTL
  18. 18. Geneticdiversity in EU breedingprograms
  19. 19. Wider QTL mining
  20. 20. QTL validation</li></li></ul><li>Project structure<br />WP4- Exploringthegenotypic and phenotypicdiversity in apple and peachgermplasm and itsexploitationbyAssociationGenomicsApproach<br />WP4- LinkageDisequilibrium/ AssociationGenomics<br /><ul><li>Phenotypic and genotypicvariability
  21. 21. Corecollection
  22. 22. QTL mappingby GWA</li></li></ul><li>Project structure<br />WP5- NEW TRAITS <br /><ul><li>Bioticstresses: Moniliniasp
  23. 23. Fruitquality: texture and fiber
  24. 24. Abioticstresses: chillingrequierement & water stress</li></ul>WP5- Understandingthegeneticsunderlying novel traits and providingphenotypictools<br />
  25. 25. Project structure<br />WP6- SNP chips<br /><ul><li>Lowdensity chip
  26. 26. Mediumdensity chip
  27. 27. Highdensity chip
  28. 28. Lowcost chip for MAB
  29. 29. In cooperationwithRosBreed, ARC, PF&R</li></ul>WP6- Development of marker/gene arraysforhighthroughputgenotyping<br />
  30. 30. Project structure<br />WP7- Bioinformatics<br /><ul><li>FruitBreedomicsDataBase
  31. 31. Coordinationwith GDR database and RosBreed</li></ul>WP7- Tools and Data management<br />
  32. 32. Project structure<br />WP8- OUTREACH<br /><ul><li>Web page, Flyer, Newsletter
  33. 33. Stakeholders Network
  34. 34. Training sessions</li></ul>WP8- OUTREACH<br />
  35. 35. STAKEHOLDER PLATFORM: BREEDERS<br />STAKEHOLDER PLATFORM: GERMPLASM CURATORS<br />
  36. 36. FruitBreedomicspartners<br />

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