Lex Nederbragt

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I am a Senior Lecturer ('Førstelektor') at the Department of Biosciences, University of Oslo. I am also head of education and training for the Centre for Bioinformatics, Dept. of Informatics, Univ. of Oslo. At the Dept. of Biosciences, I lead the implementation of Computing in Science Education in the bachelor degree. As part of that I organise the first-semester course "Introduction to Computational Modelling for the Biosciences" (BIOS1100), teaching new Bioscience students mathematical modeling of biological problems using Python. For the Centre for Bioinformatics, I develop and coordinate a portfolio of credited courses as well as workshops for master and PhD students and other staff.

bioinformatics assembly pacbio ngs sequencing next generation sequencing 454 iontorrent illumina genome cod metagenomics best practice software development computational science version control reproducibility science fish nanopore miseq hiseq twitter blog

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A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon

11 years ago • 7369 Views

Lex Nederbragt

Presentations

NGS: bioinformatic challenges

NGS techniques and data

Assembly of metagenomes

How to sequence a large eukaryotic genome

How and why I use blogging

New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond

Updated: New High Throughput Sequencing technologies at the Norwegian Sequencing Centre - and beyond

Combining PacBio with short read technology for improved de novo genome assembly

A different kettle of fish entirely: bioinformatic challenges and solutions for whole de novo genome assembly of Atlantic cod and Atlantic salmon

Repeat after me: Is our research reproducible (enough)?

Improving and validating the Atlantic Cod genome assembly using PacBio

Assembly: before and after

Why of version control

Coding & Best Practice in Programming in the NGS era