Facilitating Standardization And Exchange Of Array Design 05 08 2004

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Facilitating Standardization And Exchange Of Array Design 05 08 2004

  1. 1. Facilitating Standardization and Exchange of Array Design MAGEML2ADF 05 th August 2004
  2. 2. Modules <ul><li>Checking module </li></ul><ul><li>Conversion module </li></ul><ul><ul><li>MAGE identifier generator </li></ul></ul><ul><ul><li>Group creation (Species, Chromosome, Chromosome band) </li></ul></ul><ul><li>ADF creator module </li></ul><ul><li>Common tool module </li></ul><ul><ul><li>File reader/writer </li></ul></ul><ul><ul><li>Configuration </li></ul></ul><ul><ul><li>Update </li></ul></ul><ul><ul><li>Logging </li></ul></ul>
  3. 3. The Checking module <ul><li>File structure Definition in a XML file </li></ul><ul><ul><li>The item name </li></ul></ul><ul><ul><ul><li>Identifying rule (relax /strict) </li></ul></ul></ul><ul><ul><li>Item cardinality </li></ul></ul><ul><ul><li>field cardinality </li></ul></ul><ul><ul><li>Field value type </li></ul></ul><ul><ul><li>… . </li></ul></ul><ul><ul><li>DBTag – AccessionNumber </li></ul></ul><ul><ul><li>MGED ontology term </li></ul></ul><ul><ul><li>DocumentStructure . xsd </li></ul></ul>
  4. 4. Conversion <ul><li>ADF Data -> MAGE object (MAGE-stk) </li></ul><ul><li>ADF tables and MAGE objects parsing </li></ul>

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