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Simulation Tool - Plugin Development
 

Simulation Tool - Plugin Development

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In this presentation I give a brief overview of C# and introduce plugin development for the SBW Simulation Tool.

In this presentation I give a brief overview of C# and introduce plugin development for the SBW Simulation Tool.

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    Simulation Tool - Plugin Development Simulation Tool - Plugin Development Presentation Transcript

    • Simulation Tool Plug-in Development
      Frank T. Bergmann
      Bloomington, 2010
    • C# Intro
    • C#
      Managed Language
      Designed by: Microsoft, appeared in 2001
      Influenced by: Java, C++, Object Pascal
    • .NET Framework
    • Hello World
      using System;
      class Hello
      {
      static void Main() {
      Console.WriteLine
      ("Hello world");
      }
      }
    • Program Structure
      Namespaces
      Contain types and other namespaces
      Type declarations
      Classes, structs, interfaces, enums, and delegates
      Members
      Constants, fields, methods, properties, indexers, events, operators, constructors, destructors
      Organization
      No header files, code written “in-line”
      No declaration order dependence
    • Type System
      Value types
      Primitives int i;
      EnumsenumState { Off, On }
      StructsstructPoint { int x, y; }
      Reference types
      Classes class Foo: Bar, IFoo {...}
      Interfaces interface IFoo: IBar {...}
      Arrays string[] a = new string[10];
      Delegates delegate void Empty();
    • Classes
      Single inheritance
      Multiple interface implementation
      Class members
      Constants, fields, methods, properties, indexers, events, operators, constructors, destructors
      Static and instance members
      Nested types
      Member access
      public, protected, internal, private
    • Properties
      public class Button: Control
      {
      private string caption;
      public string Caption {
      get {
      return caption;
      }
      set {
      caption = value;
      Repaint();
      }
      }
      }
      Button b = new Button();
      b.Caption = "OK";
      String s = b.Caption;
    • Events (sourcing)
      public class Button{ public event EventHandler Click;
      protected void OnClick(EventArgs e) { if (Click != null) Click(this, e); }
      }
    • Events (handling)
      public class MyForm: Form
      {
      Button okButton;
      public MyForm() {
      okButton = new Button(...);
      okButton.Caption = "OK";
      okButton.Click += new EventHandler(OkButtonClick);
      }
      void OkButtonClick(object sender, EventArgs e) {
      ShowMessage("You pressed the OK button");
      }
      }
    • More Information
      Wikibooks:
      http://en.wikibooks.org/wiki/C_Sharp_Programming
    • Overview SIMULATION TOOL API
    • Setting UP VISUAL STUDIO
    • The Template
      http://sourceforge.net/projects/sbwsimtool/files/visual-studio-templates/v1
    • Save in My Documents
      The template needs to be saved in:
      %USERPROFILE%My DocumentsVisual Studio 2010TemplatesProjectTemplatesVisual C#
      Or
      %USERPROFILE%My DocumentsVisual Studio 2008TemplatesProjectTemplatesVisual C#
    • Open Visual Studio
    • ProjectSimula… Properties
    • ProjectSimula… Properties
    • Visual Studio Express
      <?xml version="1.0" encoding="utf-8"?>
      <Project ToolsVersion="4.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
      <PropertyGroup Condition="'$(Configuration)|$(Platform)' == 'Debug|AnyCPU'">
      <StartAction>Program</StartAction>
      <StartProgram>C:Program Files (x86)KGISBW oadrunnerSimDriverNET.exe</StartProgram>
      <StartWorkingDirectory>C:Program Files (x86)KGISBW oadrunner</StartWorkingDirectory>
      </PropertyGroup>
      </Project>
    • DebugRun
    • DebugRun
    • C O D E
    • RECAP
    • Hello World
    • SBML Viewer
    • Jarnac Editor
    • Access to the BioModels Database
    • Basic Stochastic Simulation
    • Source / Binaries
      The Visual Studio Projects + source code & binaries are available from:
      http://sourceforge.net/projects/sbwsimtool/files/tutorials/bloomington2010
    • Acknowledgements
      Funded through the generous support of ERATO, DARPA (contract number MIPR 03-M296-01) and the DOE (under Grand No. DE-FG02-04ER63804, “Computational Resources for GTL”).