Phase-II, a 3 year project Launched by GoB under BJRI label
SJ feels the need to “Open Up” and entertain new project Requests
Detail Dive The Team & Initial Challenges 1. Best Students from Dept of Genetic Engineering, Molecular Biology ( aka Dr. Haseena’s & Dr. Jeba’s Lab Students) 2. A group of Seasoned and daredevil IT professionals from DataSoft 3. Funding was not ready but must start on first Week of Jan to meet the dateline ….. DataSoft stepped in. Overseas & Media communication 4. REAL CHALLENGE : 2 Team Spoke two different languages
ASSEMBLE Repeat Masking Jumble of ACGT jumble of alphabets!!
Our Expertise Our Tools Assembly*: 454 GS FLX, Illumina/Solexa, and SOLiD with Newbler/CLC-Bio Repeat Analysis: Repeat Masker, Repeat Modeling Annotation : Machine/ Manual Using Commercial Compliance Cloud: Augustus, genewise, Twinscan Manual Curation: Web or Desktop application Publishing: gbrowse
SWAPNOJAATRA What we been Doing Research: Analysis of PXE disease, its association with ABCC6 and GGCX genes and their comparison. Computational drug design approach against two pathogens; Vibrio cholerae and Streptococcus pneumoniae. Publications: Molecular docking study of capsular regulatory protein in S. pneumoniae portends the novel approach to its treatment, Thapa S, Zubaer A, 2011, Open Access Bioinformatics (Accepted) Palindromes drive re-assortment in Influenza A, Zubaer A, Thapa S, 2011, Bioinformation 7(3); 115-119.