Teaching Scientific Communication

Teaching Scientiﬁc Communication Egon Willighagen Bioclipse & Proteochemometric Group (Prof. Wikberg) Department of Pharmaceutical Biosciences Uppsala University 2010-08-22

Learning to communicate Communication Blogs Code Repositories Presentation of Work Discussion of Work Literature Reading Research results Discussion of details Conclusions General public Other specialists 2010-08-22 Bioclipse & Proteochemometric Group -2-

The Cheminformatics ELN Communication Blogs Code Repositories Literature easier: everything is electronic already Reading Conclusions more diﬃcult: density of specialists is low 2010-08-22 Bioclipse & Proteochemometric Group -3-

What is a Blog? Communication Blogs Code Repositories Speech Literature concepts, literature, ... , Reading Conclusions grad life, gossip ... ? 2010-08-22 Bioclipse & Proteochemometric Group -4-

What is a Blog? Communication Blogs Code Repositories Speech Literature concepts, literature, ... , Reading Open Notebook Conclusions grad life, gossip ... ? 2010-08-22 Bioclipse & Proteochemometric Group -5-

Theoretical background I Communication Blogs Code Repositories Literature Standards for keeping a Notebook? Reading ... Conclusions 2010-08-22 Bioclipse & Proteochemometric Group -6-

Theoretical background II Communication Blogs Formative assessment Code Repositories grade soon, grade often Literature detailed and constructive comments Reading Conclusions models of good performance recognized standards for marking Miller, et al. Student assessment in higher education : a handbook for assessing performance; Kogan Page: 1998 2010-08-22 Bioclipse & Proteochemometric Group -7-

Blogging Students: Annzi Communication Blogs Code Repositories Literature Reading Conclusions http://annziproject.blogspot.com/ 2010-08-22 Bioclipse & Proteochemometric Group -8-

Blogging Students: Samuel Communication Blogs Code Repositories Literature Reading Conclusions http://saml.rilspace.org/ 2010-08-22 Bioclipse & Proteochemometric Group -9-

Blogging Students: assessment Communication Blogs Formative assessment Code feedback via comments Repositories Literature student can blog when they like Reading some frequency should be decided upon Conclusions open, so grading is not really possible discussion with a larger community... plenty of good models, though varying in style 2010-08-22 Bioclipse & Proteochemometric Group - 10 -

Results: MyExperiment.org Communication Blogs Code Repositories Literature Reading Conclusions 2010-08-22 Bioclipse & Proteochemometric Group - 11 -

MyExperiment: Social Communication Blogs Code Repositories Literature Reading comments Conclusions rating tagging groups ... 2010-08-22 Bioclipse & Proteochemometric Group - 12 -

Methods: GitHub Communication Blogs Code Repositories Literature Reading Conclusions 2010-08-22 Bioclipse & Proteochemometric Group - 13 -

GitHub: code review Communication Blogs Code Repositories Literature Reading Conclusions 2010-08-22 Bioclipse & Proteochemometric Group - 14 -

Code repositories: assessment Communication Blogs Code Repositories feedback 1: commits (model example, feedback...) Literature Reading feedback 2: code review, comments Conclusions open, so grading is not really possible discussion with a larger community... 2010-08-22 Bioclipse & Proteochemometric Group - 15 -

Journal Club Communication Blogs Code Repositories Literature Reading Conclusions http://www.ResearchBlogging.com 2010-08-22 Bioclipse & Proteochemometric Group - 16 -

Conclusions Communication Blogs Open Notebook Code can I require them to go Open Notebook Science? Repositories Literature Assessment? Reading part of the assessment works... but not all. Conclusions plenty of models (perhaps a problem?) enough options for feedback still looking for mark schemes 2010-08-22 Bioclipse & Proteochemometric Group - 17 -

Acknowledgements Communication Blogs Code Repositories Literature Reading Annsoﬁe & Samuel Conclusions 2010-08-22 Bioclipse & Proteochemometric Group - 18 -

The Details Communication Blogs Code Repositories Literature http: Reading Conclusions //chem-bla-ics.blogspot.com 2010-08-22 Bioclipse & Proteochemometric Group - 19 -

http://chem-bla-ics.blogspot.com	51
http://chem-bla-ics.blogspot.de	4
http://chem-bla-ics.blogspot.co.uk	3
http://lanyrd.com	3
http://chem-bla-ics.blogspot.ca	2
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http://chem-bla-ics.blogspot.cz	1
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http://chem-bla-ics.blogspot.ca.proxy.lib.uwaterloo.ca	1
http://chem-bla-ics.blogspot.com.au	1
http://chem-bla-ics.blogspot.tw	1
http://chemblogs.net	1
http://chem-bla-ics.blogspot.jp	1

Teaching Scientific Communication

by Egon Willighagen

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