Lecture 2. Concepts in Programming

Bioinformatics and Biocomputing LSM3241
Data
knowledge base
ontology

data grammar
database

database record
data indexing
controlled vocabulary
data model
compos...
Hardware
Storage

blocks

files

size
Network

packets

Memory

data

speed

composite
structured
primitive

bits

CPU
http://shootout.alioth.debian.org/
benchtraj – standard benchmark since 2002
14 pipelined computations in under 130ms
Sr. Director, Technical Product Marketing
@cwvhogue
christopher.hogue@joyent.com
https://github.com/cwvhogue
Bryan Cantrill
Brendan Gregg

Mark Cavage
Dave Pacheco
Ben Rockwood
Max Bruning
Deirdré Straughan
Ben Wen
http://dtrace.or...
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
From the classroom to the cloud   a journey with node.js - Christopher Hogue
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From the classroom to the cloud a journey with node.js - Christopher Hogue

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From the classroom to the cloud a journey with node.js - Christopher Hogue

  1. 1. Lecture 2. Concepts in Programming Bioinformatics and Biocomputing LSM3241
  2. 2. Data knowledge base ontology data grammar database database record data indexing controlled vocabulary data model composite data types structured data types primitive data types byte bit run time language operating system network filesystem
  3. 3. Hardware Storage blocks files size Network packets Memory data speed composite structured primitive bits CPU
  4. 4. http://shootout.alioth.debian.org/
  5. 5. benchtraj – standard benchmark since 2002
  6. 6. 14 pipelined computations in under 130ms
  7. 7. Sr. Director, Technical Product Marketing @cwvhogue christopher.hogue@joyent.com https://github.com/cwvhogue
  8. 8. Bryan Cantrill Brendan Gregg Mark Cavage Dave Pacheco Ben Rockwood Max Bruning Deirdré Straughan Ben Wen http://dtrace.org/blogs/ http://joyent.com/blogs/ Twitter: @cwvhogue christopher.hogue@joyent.com https://github.com/cwvhogue

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