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Reproductive behavior and germplasm classification
 of wild potato populations: relevance in germplasm
             conservation and breeding




                           Elsa L. Camadro


                         Laboratorio de Genética
             Instituto Nacional de Tecnología Agropecuaria
                  Universidad Nacional de Mar del Plata
        Consejo Nacional de Investigaciones Científicas y Técnicas
                               Argentina
Premises of the presentation


The knowledge of the reproductive biology of wild potatoes
 and its consequences in the functioning of natural populations
 is of utmost importance to understand the morphological and
 molecular variability encountered in the group

The choice of genetic materials and methodological approches
 used to classify wild germplasm has direct consequences in:


population sampling
ex situ conservation of germplasm (gene frequencies)
breeding
Plant classifications in the XXth and XXIth centuries



           Artificial binomial system developed
                by von Linneus in the XVIIIth


                based in the use of “holotypes”



    (single physical examples or illustrations of organisms known
     to have been used when the species or lower-ranked taxon
                       were formally described)


with the more recent aid of biochemical and molecular tools
Species Concept
                                   based on

        reproductive relations                morphological phenotypes
   and morphological discontinuities          (uni- and biparental organisms)
          (biparental organisms)




       Biological species                     Taxonomic species



The Biological species can coincide (or not) with the Taxonomic species




      If the two uses of the term are not distinguished,
                 the confusion is perpetuated
Genus Solanum

  ~1,000-2,000 species
     (herbs or shrubs)

     ≥110 ≤235 wild and
      cultivated tuber-
       bearing species

Section Petota (Tuberarium)

Subsection Potatoe (Hyperbasarthrum)




                                       Spooner y Hijmans 2001
Species concept in subsection
    Hyperbasarthrum (actually Potatoe)

               Early XXth century
Narrow taxonomic unit, with little phenotypic variability
             (Bitter, Juzepczuk, Bukasov)


                Mid XXth century
   Profound revision of tuber-bearing species due
  to great phenotypic variability encountered
                    (Hawkes 1963)



      Late XXth and early XXIth centuries
      New revisions     (Hawkes 1990; Spooner´s group)
Taxonomic revisions
                      (last 20 years)

                   Mainly based on:

  Herbarium materials and samples of living plantas,
   with more recent application of molecular tools to
accessions with previously assigned specific categories



            No. of tuber-bearing species:

                Hawkes (1990): 227

           Spooner and Hijmans (2001): 203

             Spooner and Salas (2006): 189

        Spooner (2009): converging around 110
Main features of wild and cultivated potatoes



Form polyploid series

 (2n=2x, 3x, 4x, 5x, 6x; x=12)




Can reproduce:


  •sexually (by seeds)
  •asexually (by stolons and tubers)
Posses one multiallelic S-locus conferring
             gametophytic SI

  diploids          obligate outcrossers
 polyploids        -allogamous (can self-pollinate by
                      competitive S-alleles interaction)
                     -autogamous (self-pollinate)

  S7                                  S1     S2
       S4

                        1st Third
       S1 S2                                S1 S2




Self-compatible                 Self-incompatible
-continues-

    Present scarce genome differentiation

          All species share a common genome (A),
          and four derived genomes (B, C, D, E)


     Under genetic control, can produce:

     •2n pollen and/or 2n eggs
          Gametophytes with sporophytic chromosome numbers
     •Haploids
          Sporophytes with gametophytic chromosome numbers


     In nature, are isolated by external and/or
      internal hybridization barriers

     The internal barriers are genetically controlled
      and can be incomplete
                                                   Camadro et al. 2004
General Observations
The breeding system provides for:

 maintenance of superior genotypes in stable environments

 evolution of new genotypic combinations in changing

  environments

 overlapping of generations (parental, hybrids, BCs)


 The morphological phenotypic differences among taxa
  are not of great magnitude

Hybridization and gene flow within and between
 ploidy levels and generations produce very complex
 patterns of morphological variation
Potato accessions

   Samples of natural populations ex situ conserved as:
original collections or multiplications of original collections

                           Purposes
 Conservation of samples of natural variability of a species
   and of genes for breeding and other applied purposes
            P1                 P2                    P3

          xxxx                 xx                x   x   x   x   x   x
          xxxx                 xx                x   x   x   x   x   x
          xxxx                 x                 x   x   x   x   x   x
                                                 x   x   x   x   x   x


         Passport information for potato accessions:

Collection date, locality, latitude, longitude and altitude a.s.l.
Information unavaible or lacking

In situ sampling
No. and spatial distribution of sampled plants at collection site
No. harvested fruits or tubers/sampled plant
No. sampled plants/population
How the seed sample (accession) is formed
If seedlings are sampled, their spatial distribution

          Are accessions representative samples of
     the natural genetic variability at the sampling site?

Ex situ seed/tuber multiplication
Effective no. of parental plants
No. harvested fruits or tubers/plant
No. harvested seeds/fruit
How the seed sample (accession) is formed
        Discarding unwanted contamination/crossing
        Has genetic drift being avoided?
Current classification approaches are based on
             the Taxonomic species concept

not taken into consideration:

Natural populations of sexual reproducing allogamous plants
 are expected to exhibit morphological and genetic variation
 (one plant=one genotype)


Morphological and genetic variation can occur within and
 between populations of the same taxonomic species

Natural populations can consist of uni- and biparental plants,
 with overlapping of generations


Breeding relations within and among spontaneous populations
 provide for hybridization and introgression among ploidy levels
 and generations, creating complex patterns of variation
Camadro et al. 2012
Pre-zygotic hybridization barriers
Prevention of fertilization due to abnormalities in


                                    Pollen tube growth
 Pollen germination


                              Estigma
                                  1/3
1st Third                     1er Tercio
                              2do2/3
                                   Tercio
                              3 3/3
                               er
                                  Tercio
                                ovary




            Gametophytic SI            Cross Incompatibility
               Bilateral                        (CI)
                                       Unilateral or Bilateral

                                              Camadro y Peloquin 1981
Compatible   Incompatible
Post-zygotic barriers
Inviability of embryo and/or endosperm in the
 F1 hybrid seed due to abnormal embryo and/or
 endosperm development/abortion

Hybrid sterility (principally male sterility)



Inviability or weakness of F2 and advanced
 segregating generations


                                           Camadro et al. 2004
Inviability of F1 hybrid seed


           endosperm          Genetic causes
                                   (EBN)


Abortion
                           Endosperm abortion

           embryo


                           Genetic causes
                           (cannot be circumvented)
2x 1NBE cmm x 2x 1NBE cmm, 15 DDP    4x 2NBE acl x 2x 1NBE cmm, 9 DDP




  2x 2NBE grl x 4x 4NBE grl, 9 DDP   4x 2NBE acl x 2x 2NBE grl, 11DDP
                                                  Masuelli y Camadro (1997)
Hybrid Male Sterility
Male sterility and cytological abnormalities


         Interspecific artificial hybrids

 Diploids:      S. tuberosum (tbr) x S. chacoense (chc),
                 tbr x S.gourlayi (grl),
                 tbr x S. spegazzinii (spg)
                   (Santini et al. 2000)


 Tetraploids:   grl x tbr and tbr x grl
                   (Larrosa et al. 2005)


              Spontaneous hybrids

              grl-S. infundibuliforme
                   (Larrosa et al. 2005)
Species of hybrid origin

            S. ruiz-lealli
(Raimondi et al. 2000; Marfil et al. 2009)




            “Species”


             S. okadae
(Camadro et al. 2007; Bottini et al. 2008)

           S. chacoense
(Bottini et al. 2009; Larrosa et al. 2010;
           Poulsen et al. 2011)
“tetrad” type sterility




tbr x grl                                                 tbr x chc

            Interspecific 2x (artificial) F1 hybrids
                                                       Santini et al. (2000)
N
     S. x ruiz-lealli
2x species of hybrid origin)




       E           E
                                   Raimondi et al. 2005
Erazzú and Camadro 2008
polen




Fertile and sterile pollen in spontaneous and artificial hybrids and
                 populations with specific category

                                                    Larrosa et al. 2010
Tetrad stage in spontaneous and artificial hybrids
      and populations with specific category
                                             Larrosa et al. 2010
P                MI             MII         AI




MII       AI          AII             MII




AII        AII                   TI         TII

      Meiosis in spontaneous and artificial hybrids
         and populations with specific category
                                             Larrosa et al. 2010
Bolivia                               Argentina
    a                   b

a




                            S. okadae (2x)

                    Accessions from Germplasm Potato Bank,
                                 INTA, Argentina



        Argentina                      Camadro et al. 2007
S. kurtzianum (2x)




OKA 872                         OKA 5026                            OKA 6003




OKA 6144                         OKA 4505                           OKA 6125

           Accessions from Germplasm Potato Bank, INTA, Argentina
                                                             Bedogni & Camadro 2009
Evaluation of morphological characters
(quanti- and qualitative) and molecular markers (SSR)


 Accessions from:

  S. kurtzianum, Catamarca, La Rioja and
 Mendoza

 Sympatric “species”:

     •S. chacoense (chc),
     •S. spegazzinii (spg)
 “outliers”
    •S. oplocense (opl) y S. maglia (mag)


       Genetic distances among sympatric accessions
                with different specific statuts
       was smaller than among allopatric accessions
                with the same specific status
                                            Bedogni & Camadro 2009
Accessions of S. kurtzianum (ktz) S. chacoense (chc), S.
        spegazzinii (spg), S. maglia (mag) and S. oplocense (opl)


opl
C OKA 6147
C OL 4943

C OKA 6144
M SCl 4505
R OKA 6003
R OKA 6125
M ClM 872
C OKA 6141
C OKA 5026

M mag
R OKA 6113

C OKA 6107

             0.00         0.22                 0.45                0.67             0.90
                                 SM Coefficient

                        = chc      = ktz             = spg
                     C=Catamarca, M=Mendoza, R=La Rioja

                       Nuclear SSR markers
                                                                Bedogni & Camadro 2009
UPGMA phenogram of accessions of S. kurtzianum (ktz),
S. chacoense (chc), S. spegazzinii (spg), S. maglia (mag) and
            S. tuberosum ssp. tuberosum (tbr)
        M ClM 872

                M mag

         M SCl 4505

        R OKA 6125

        C OKA 6144

        R OKA 6003

        R OKA 6113
                       tbr

        C OKA 6147

         C OKA 6107

        C OKA 6141

         C OL 4943

        C OKA 5026



                      0.00           1.60             3.21             4.81     6.42

                                    Euclidean Distance Coefficient

                                 = chc         = ktz          = spg
                             C=Catamarca , M= Mendoza, R= La Rioja


            Morphological Qualitative Traits
                                                                     Bedogni & Camadro 2009
UPGMA phenogram of accesssions of S. kurtzianum (ktz),
S. chacoense (chc), S. spegazzinii (spg), S. maglia (mag) and
             S. tuberosum ssp. tuberosum (tbr)
                  tbr


   C OKA 6107

    C OKA 6147

             M mag


    R OKA 6003

    C OKA 5026

      C OL 4943

     M SCl 4505


    C OKA 6144
    R OKA 6113

    R OKA 6125


      M ClM 872

    C OKA 6141



                     0.00         2.02                      4.05          6.07         8.09

                                         Euclidian Distance Coefficient


                         Morphological Quantitative Traits
                        Caracteres Morfológicos Cuantitativos
                                                                          Bedogni & Camadro 2009
To fully exploit in breeding the genetic variability
                  of the wild potato germplasm

Screen various accessions (if available),
(particularly if the “species” has wide geographic or environmental distribution)


Take into consideration:
   macro- and micro-environments of the originally sampled sites
   type of original samples (botanical seed, seedlings, tubers)

Screen 15-25 plants/accession for allogamous “species”
 (one plant= one genotype) and ≥10 plants for autogamous “species”
  (there could be homozygosity for different gene combinations)

Use incomplete diallele crossing designs
 (keeping tract of individual genotypic combinations. Breeding barriers
  can be incomplete, hybrids are very frequent and there are
  nuclear-cytoplasmic interactions)

Conclude with respect to a given accession, not a species
 (do not extrapolate results).
Thank you
Gametofitos
                                     Gametos ♂

  polinización

                           Polen germinando




          Situaciones
          estructurales                             Óvulo maduro
          y fisiológicas




           Fecundación
                                                Gameto ♀



  Formación
Semillas viables             Saco embrionario

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Elsa Camadro's presentation in the framework of the expert consultation on the use of crop wild relatives for pre-breeding in potato

  • 1. Reproductive behavior and germplasm classification of wild potato populations: relevance in germplasm conservation and breeding Elsa L. Camadro Laboratorio de Genética Instituto Nacional de Tecnología Agropecuaria Universidad Nacional de Mar del Plata Consejo Nacional de Investigaciones Científicas y Técnicas Argentina
  • 2. Premises of the presentation The knowledge of the reproductive biology of wild potatoes and its consequences in the functioning of natural populations is of utmost importance to understand the morphological and molecular variability encountered in the group The choice of genetic materials and methodological approches used to classify wild germplasm has direct consequences in: population sampling ex situ conservation of germplasm (gene frequencies) breeding
  • 3. Plant classifications in the XXth and XXIth centuries Artificial binomial system developed by von Linneus in the XVIIIth based in the use of “holotypes” (single physical examples or illustrations of organisms known to have been used when the species or lower-ranked taxon were formally described) with the more recent aid of biochemical and molecular tools
  • 4. Species Concept based on reproductive relations morphological phenotypes and morphological discontinuities (uni- and biparental organisms) (biparental organisms) Biological species Taxonomic species The Biological species can coincide (or not) with the Taxonomic species If the two uses of the term are not distinguished, the confusion is perpetuated
  • 5. Genus Solanum ~1,000-2,000 species (herbs or shrubs) ≥110 ≤235 wild and cultivated tuber- bearing species Section Petota (Tuberarium) Subsection Potatoe (Hyperbasarthrum) Spooner y Hijmans 2001
  • 6. Species concept in subsection Hyperbasarthrum (actually Potatoe) Early XXth century Narrow taxonomic unit, with little phenotypic variability (Bitter, Juzepczuk, Bukasov) Mid XXth century Profound revision of tuber-bearing species due to great phenotypic variability encountered (Hawkes 1963) Late XXth and early XXIth centuries New revisions (Hawkes 1990; Spooner´s group)
  • 7. Taxonomic revisions (last 20 years) Mainly based on: Herbarium materials and samples of living plantas, with more recent application of molecular tools to accessions with previously assigned specific categories No. of tuber-bearing species: Hawkes (1990): 227 Spooner and Hijmans (2001): 203 Spooner and Salas (2006): 189 Spooner (2009): converging around 110
  • 8. Main features of wild and cultivated potatoes Form polyploid series (2n=2x, 3x, 4x, 5x, 6x; x=12) Can reproduce: •sexually (by seeds) •asexually (by stolons and tubers)
  • 9. Posses one multiallelic S-locus conferring gametophytic SI diploids obligate outcrossers polyploids -allogamous (can self-pollinate by competitive S-alleles interaction) -autogamous (self-pollinate) S7 S1 S2 S4 1st Third S1 S2 S1 S2 Self-compatible Self-incompatible
  • 10. -continues- Present scarce genome differentiation All species share a common genome (A), and four derived genomes (B, C, D, E) Under genetic control, can produce: •2n pollen and/or 2n eggs Gametophytes with sporophytic chromosome numbers •Haploids Sporophytes with gametophytic chromosome numbers In nature, are isolated by external and/or internal hybridization barriers The internal barriers are genetically controlled and can be incomplete Camadro et al. 2004
  • 11. General Observations The breeding system provides for:  maintenance of superior genotypes in stable environments  evolution of new genotypic combinations in changing environments  overlapping of generations (parental, hybrids, BCs)  The morphological phenotypic differences among taxa are not of great magnitude Hybridization and gene flow within and between ploidy levels and generations produce very complex patterns of morphological variation
  • 12. Potato accessions Samples of natural populations ex situ conserved as: original collections or multiplications of original collections Purposes Conservation of samples of natural variability of a species and of genes for breeding and other applied purposes P1 P2 P3 xxxx xx x x x x x x xxxx xx x x x x x x xxxx x x x x x x x x x x x x x Passport information for potato accessions: Collection date, locality, latitude, longitude and altitude a.s.l.
  • 13. Information unavaible or lacking In situ sampling No. and spatial distribution of sampled plants at collection site No. harvested fruits or tubers/sampled plant No. sampled plants/population How the seed sample (accession) is formed If seedlings are sampled, their spatial distribution Are accessions representative samples of the natural genetic variability at the sampling site? Ex situ seed/tuber multiplication Effective no. of parental plants No. harvested fruits or tubers/plant No. harvested seeds/fruit How the seed sample (accession) is formed Discarding unwanted contamination/crossing Has genetic drift being avoided?
  • 14. Current classification approaches are based on the Taxonomic species concept not taken into consideration: Natural populations of sexual reproducing allogamous plants are expected to exhibit morphological and genetic variation (one plant=one genotype) Morphological and genetic variation can occur within and between populations of the same taxonomic species Natural populations can consist of uni- and biparental plants, with overlapping of generations Breeding relations within and among spontaneous populations provide for hybridization and introgression among ploidy levels and generations, creating complex patterns of variation
  • 17. Prevention of fertilization due to abnormalities in Pollen tube growth Pollen germination Estigma 1/3 1st Third 1er Tercio 2do2/3 Tercio 3 3/3 er Tercio ovary Gametophytic SI Cross Incompatibility Bilateral (CI) Unilateral or Bilateral Camadro y Peloquin 1981
  • 18. Compatible Incompatible
  • 20. Inviability of embryo and/or endosperm in the F1 hybrid seed due to abnormal embryo and/or endosperm development/abortion Hybrid sterility (principally male sterility) Inviability or weakness of F2 and advanced segregating generations Camadro et al. 2004
  • 21. Inviability of F1 hybrid seed endosperm Genetic causes (EBN) Abortion Endosperm abortion embryo Genetic causes (cannot be circumvented)
  • 22. 2x 1NBE cmm x 2x 1NBE cmm, 15 DDP 4x 2NBE acl x 2x 1NBE cmm, 9 DDP 2x 2NBE grl x 4x 4NBE grl, 9 DDP 4x 2NBE acl x 2x 2NBE grl, 11DDP Masuelli y Camadro (1997)
  • 24. Male sterility and cytological abnormalities Interspecific artificial hybrids Diploids: S. tuberosum (tbr) x S. chacoense (chc), tbr x S.gourlayi (grl), tbr x S. spegazzinii (spg) (Santini et al. 2000) Tetraploids: grl x tbr and tbr x grl (Larrosa et al. 2005) Spontaneous hybrids grl-S. infundibuliforme (Larrosa et al. 2005)
  • 25. Species of hybrid origin  S. ruiz-lealli (Raimondi et al. 2000; Marfil et al. 2009) “Species” S. okadae (Camadro et al. 2007; Bottini et al. 2008) S. chacoense (Bottini et al. 2009; Larrosa et al. 2010; Poulsen et al. 2011)
  • 26. “tetrad” type sterility tbr x grl tbr x chc Interspecific 2x (artificial) F1 hybrids Santini et al. (2000)
  • 27. N S. x ruiz-lealli 2x species of hybrid origin) E E Raimondi et al. 2005
  • 29. polen Fertile and sterile pollen in spontaneous and artificial hybrids and populations with specific category Larrosa et al. 2010
  • 30. Tetrad stage in spontaneous and artificial hybrids and populations with specific category Larrosa et al. 2010
  • 31. P MI MII AI MII AI AII MII AII AII TI TII Meiosis in spontaneous and artificial hybrids and populations with specific category Larrosa et al. 2010
  • 32. Bolivia Argentina a b a S. okadae (2x) Accessions from Germplasm Potato Bank, INTA, Argentina Argentina Camadro et al. 2007
  • 33. S. kurtzianum (2x) OKA 872 OKA 5026 OKA 6003 OKA 6144 OKA 4505 OKA 6125 Accessions from Germplasm Potato Bank, INTA, Argentina Bedogni & Camadro 2009
  • 34. Evaluation of morphological characters (quanti- and qualitative) and molecular markers (SSR) Accessions from:  S. kurtzianum, Catamarca, La Rioja and Mendoza Sympatric “species”: •S. chacoense (chc), •S. spegazzinii (spg) “outliers” •S. oplocense (opl) y S. maglia (mag) Genetic distances among sympatric accessions with different specific statuts was smaller than among allopatric accessions with the same specific status Bedogni & Camadro 2009
  • 35. Accessions of S. kurtzianum (ktz) S. chacoense (chc), S. spegazzinii (spg), S. maglia (mag) and S. oplocense (opl) opl C OKA 6147 C OL 4943 C OKA 6144 M SCl 4505 R OKA 6003 R OKA 6125 M ClM 872 C OKA 6141 C OKA 5026 M mag R OKA 6113 C OKA 6107 0.00 0.22 0.45 0.67 0.90 SM Coefficient  = chc  = ktz  = spg C=Catamarca, M=Mendoza, R=La Rioja Nuclear SSR markers Bedogni & Camadro 2009
  • 36. UPGMA phenogram of accessions of S. kurtzianum (ktz), S. chacoense (chc), S. spegazzinii (spg), S. maglia (mag) and S. tuberosum ssp. tuberosum (tbr) M ClM 872 M mag M SCl 4505 R OKA 6125 C OKA 6144 R OKA 6003 R OKA 6113 tbr C OKA 6147 C OKA 6107 C OKA 6141 C OL 4943 C OKA 5026 0.00 1.60 3.21 4.81 6.42 Euclidean Distance Coefficient  = chc  = ktz  = spg C=Catamarca , M= Mendoza, R= La Rioja Morphological Qualitative Traits Bedogni & Camadro 2009
  • 37. UPGMA phenogram of accesssions of S. kurtzianum (ktz), S. chacoense (chc), S. spegazzinii (spg), S. maglia (mag) and S. tuberosum ssp. tuberosum (tbr) tbr C OKA 6107 C OKA 6147 M mag R OKA 6003 C OKA 5026 C OL 4943 M SCl 4505 C OKA 6144 R OKA 6113 R OKA 6125 M ClM 872 C OKA 6141 0.00 2.02 4.05 6.07 8.09 Euclidian Distance Coefficient Morphological Quantitative Traits Caracteres Morfológicos Cuantitativos Bedogni & Camadro 2009
  • 38. To fully exploit in breeding the genetic variability of the wild potato germplasm Screen various accessions (if available), (particularly if the “species” has wide geographic or environmental distribution) Take into consideration: macro- and micro-environments of the originally sampled sites type of original samples (botanical seed, seedlings, tubers) Screen 15-25 plants/accession for allogamous “species” (one plant= one genotype) and ≥10 plants for autogamous “species” (there could be homozygosity for different gene combinations) Use incomplete diallele crossing designs (keeping tract of individual genotypic combinations. Breeding barriers can be incomplete, hybrids are very frequent and there are nuclear-cytoplasmic interactions) Conclude with respect to a given accession, not a species (do not extrapolate results).
  • 40. Gametofitos Gametos ♂ polinización Polen germinando Situaciones estructurales Óvulo maduro y fisiológicas Fecundación Gameto ♀ Formación Semillas viables Saco embrionario