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Clc Bio Basic Company Presentation

Clc Bio Basic Company Presentation






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    Clc Bio Basic Company Presentation Clc Bio Basic Company Presentation Presentation Transcript

    • CLC bio Bioinformatics Solutions
    • Presentation of CLC bio
      • HQ in Denmark. Offices in USA, Brazil & India, and resellers in 10+ countries
      • Focus on bioinformatics solutions: Software, Hardware, and Consulting services
      • A large number of world class bioinformatics scientists work for CLC bio
      • More than 47,000 software users since the first release in July 2005
    • CLC bio – global reach CLC bio – global reach
    • Software objectives
      • • To make user-friendly state-of-the-art bioinformatics software
      • • To integrate all analyses in one program
      • • To make software that works on:
      • • To involve users as much as possible
      • – CLC bio offers free user-support to all programs
      • – CLC bio is very open to user suggestions
      • – There are at least 2 program upgrades a year
    • CLC bio’s software solutions
        • CLC Free Workbench : A number of basic bioinformatics analyses, all integrated in the same software package.
        • CLC DNA Workbench : A large number of advanced DNA sequence analyses.
        • CLC RNA Workbench: Provides easy access to a range of complex algorithms and options, for RNA secondary structure prediction and editing.
        • CLC Protein Workbench : A large number of advanced protein sequence analyses.
        • CLC Combined Workbench : All the above gathered in one single, fully integrated software package.
    • CLC Free Workbench
      • Bioinformatics feature examples :
      • Multiple alignment
      • Phylogenetic trees
      • Restriction site finding
      • GenBank search
      • Viewing of all results from our commercial programs
    • CLC DNA Workbench
      • Bioinformatics feature examples :
      • Assembly of DNA sequencing data ( Assembly)
      • Advanced primer design
      • Cloning
      • Automatic SNP annotation
      • Complexity region analyses
      • Dot plot based analyses
    • CLC RNA Workbench
      • Bioinformatics feature examples :
      • Structure prediction
      • 2D structure editor
      • Linear structure editor
      • RNA alignment
      • Pattern discovery
      • BLAST analysis
    • CLC Protein Workbench
      • Bioinformatics feature examples :
      • Secondary structure predictions
      • BLAST searches (NCBI or Local)
      • Signal peptide prediction
      • 3D molecule viewer
      • Transmembrane helix prediction
      • Hydrophobicity analyses
    • CLC Combined Workbench
      • All the functionalities of Free, DNA, RNA and Protein in one program!
    • System requirements
      • … for all workbenches from CLC bio:
      • Mac OS X 10.3 or later (including Intel-based Macs)
      • Windows 2000, Windows XP, or Windows Vista
      • Linux: Redhat or SuSE
      • 256 MB RAM required
      • 512 MB RAM recommended
      • 1024 x 768 display recommended
      • Additional requirements for CLC Protein Workbench and CLC Combined Workbench
      • 3D viewing requires an OpenGL 3D graphics driver
    • CLC Software Developer Kit
      • Software Developer Kit: This API enables the user to make his/her own modules for the CLC Workbench.
    • www.clccube.com
    • Hardware accelerated bioinformatics
      • Acceleration through innovative use of FPGA technology
      • Smith-Waterman more than 100 times faster than a fast desktop computer
    • Hardware accelerated bioinformatics
      • Portable: Plug-and-play connection through a USB 2.0 port
      • Upcoming: Faster Smith-Waterman searches, ClustalW, and other alignments
    • Cube Interfaces
      • Blast interface
        • Like NCBI Blast (including extension)
        • Add a command line parameter and the hardware Smith- Waterman is used
        • Easy integration with existing infrastructure
      • Graphical interface
        • Easy to use for all people
        • Better overview and workflow for Workbench users
    • CLC Bioinformatics Cell
    • CLC Bioinformatics Cell
      • Acceleration through innovative use of SIMD technology
      • Smith-Waterman more than 100 times faster than a fast desktop computer - speed depends on CPU-power
      • Current algorithms: Smith-Waterman and ClustalW
      • Upcoming:    - Even faster    - Significantly more algorithms    - Able to run in clusters
    • Some of CLC bio’s customers
      • NASA Exobiology Branch, USA
      • National Institutes of Health (NIH), USA
      • Pasteur Institute, France
      • Royal Perth Hospital, Australia
      • National Hospital of Denmark
      • Solvay Pharmaceuticals, Germany
      “ The wide variety of other tools in CLC's software are extremely useful - BLAST searches from within the program, in silico restriction digests, alignments, phylogenetic trees, among a lot of other features.” Dr. Stefan J. Green, NASA, Exobiology branch.