Next-generation sequencing request management system in Galaxy

Goal Usage Implementation Availability Next-generation sequencing request management system in Galaxy Brad Chapman 16 May 2010

Goal Usage Implementation Availability Researchers Sequencing Core Samples Analysis

Goal Usage Implementation Availability Sample and request infrastructure

Goal Usage Implementation Availability Functionality Researcher sample entry Sequencing tracking and management Layout of ﬂow cells Full integration with Galaxy

Goal Usage Implementation Availability Multiple services

Goal Usage Implementation Availability Sample entry

Goal Usage Implementation Availability Organize as projects

Goal Usage Implementation Availability Project based view

Goal Usage Implementation Availability Tracking and management

Goal Usage Implementation Availability Flow cell layout

Goal Usage Implementation Availability Leverages Galaxy infrastructure Display Database grids samples form builder requests events form values Added to database One relationship table

Goal Usage Implementation Availability Sample request relationships Next-gen Next-gen Requests: Sequencing Sequencing Run 1 Run 2 Sample 2 Sample Sample 3 Library Pre-sequencing Sequencing Sequencing Requests: Construction Validation quantitation Sequencing Details results 1 results 2

Goal Usage Implementation Availability Community Positives Suggestions Consistent High level update interface summaries Excellent backend Internals Maintainability documentation Roadmap

Goal Usage Implementation Availability Availability Repository tracking Galaxy development http://bitbucket.org/chapmanb/ galaxy-central Hope to integrate with the main code base

Next-generation sequencing request management system in Galaxy

by Brad Chapman on May 14, 2010

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Next-generation sequencing request management system in Galaxy Presentation Transcript