Next-generation sequencing request management system in Galaxy
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Next-generation sequencing request management system in Galaxy

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  • 1. Goal Usage Implementation Availability Next-generation sequencing request management system in Galaxy Brad Chapman 16 May 2010
  • 2. Goal Usage Implementation Availability Researchers Sequencing Core Samples Analysis
  • 3. Goal Usage Implementation Availability Sample and request infrastructure
  • 4. Goal Usage Implementation Availability Functionality Researcher sample entry Sequencing tracking and management Layout of flow cells Full integration with Galaxy
  • 5. Goal Usage Implementation Availability Multiple services
  • 6. Goal Usage Implementation Availability Sample entry
  • 7. Goal Usage Implementation Availability Organize as projects
  • 8. Goal Usage Implementation Availability Project based view
  • 9. Goal Usage Implementation Availability Tracking and management
  • 10. Goal Usage Implementation Availability Flow cell layout
  • 11. Goal Usage Implementation Availability Leverages Galaxy infrastructure Display Database grids samples form builder requests events form values Added to database One relationship table
  • 12. Goal Usage Implementation Availability Sample request relationships Next-gen Next-gen Requests: Sequencing Sequencing Run 1 Run 2 Sample 2 Sample Sample 3 Library Pre-sequencing Sequencing Sequencing Requests: Construction Validation quantitation Sequencing Details results 1 results 2
  • 13. Goal Usage Implementation Availability Community Positives Suggestions Consistent High level update interface summaries Excellent backend Internals Maintainability documentation Roadmap
  • 14. Goal Usage Implementation Availability Availability Repository tracking Galaxy development http://bitbucket.org/chapmanb/ galaxy-central Hope to integrate with the main code base