Put Some Hustle In Your Papers

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My first pitch of http://paperhustler.com and an overview of what the paper of the future could look like.

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  • Put Some Hustle In Your Papers

    1. 1. PAPERS Casey Stark WACT February 24, 2011
    2. 2. You are a scientist http://blog.sciencegeekgirl.com/2008/07/12/crackpot-science/ http://seds.org/messier/more/m-hubble.html
    3. 3. You are a scientist http://blog.sciencegeekgirl.com/2008/07/12/crackpot-science/ http://seds.org/messier/more/m-hubble.html
    4. 4. You are a scientist http://blog.sciencegeekgirl.com/2008/07/12/crackpot-science/ http://seds.org/messier/more/m-hubble.html
    5. 5. You work hard http://www.flickr.com/photos/maisonbisson/201844037/ http://ignatz.buzznet.com/user/photos/math-is-hard/?id=48938861
    6. 6. You work hard http://www.flickr.com/photos/maisonbisson/201844037/ http://ignatz.buzznet.com/user/photos/math-is-hard/?id=48938861
    7. 7. You work hard http://www.flickr.com/photos/maisonbisson/201844037/ http://ignatz.buzznet.com/user/photos/math-is-hard/?id=48938861
    8. 8. Eurekas http://comedymeltdown.com/2009/05/03/free-comic-book-day-2009great-success/
    9. 9. NOW WHAT?
    10. 10. Dissemination
    11. 11. Dissemination Talk
    12. 12. Dissemination Talk Poster
    13. 13. Dissemination Talk Poster Paper
    14. 14. You know the drill
    15. 15. You know the drillWrite some background.
    16. 16. You know the drillWrite some background. copy-paste the intro from your last paper
    17. 17. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did.
    18. 18. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did. not including the 3 days you spent debugging that one plotting error
    19. 19. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did. not including the 3 days you spent debugging that one plotting errorReport what you got from that work.
    20. 20. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did. not including the 3 days you spent debugging that one plotting errorReport what you got from that work. and triple check the units
    21. 21. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did. not including the 3 days you spent debugging that one plotting errorReport what you got from that work. and triple check the unitsPontificate on said results.
    22. 22. You know the drillWrite some background. copy-paste the intro from your last paperExplain what you did. not including the 3 days you spent debugging that one plotting errorReport what you got from that work. and triple check the unitsPontificate on said results. maybe name something after yourself or significant other
    23. 23. THEORY VS. EXPERIMENT
    24. 24. Scientist efficiency
    25. 25. Scientist efficiency Wscienceescientist = Wscience + WBS
    26. 26. Scientist efficiency Wscienceescientist = Wscience + WBS ≈ 0.7 ?
    27. 27. Scientist efficiency Wscienceescientist = Wscience + WBS ≈ 0.7 ? * Significant dependence on definitions
    28. 28. Keepin’ it RealWriting a paper is fraking hard
    29. 29. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX error
    30. 30. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX errorWhy won’t the table stay in the same place?
    31. 31. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX error The science is hardWhy won’t the table stay in the same place?
    32. 32. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX error Emailing versions and comments back and forth The science is hardWhy won’t the table stay in the same place?
    33. 33. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX error Emailing versions and comments back and forth The science is hardWhy won’t the table stay in the same place? How the hell do I get my plotting library to do that?
    34. 34. Keepin’ it Real Writing a paper is fraking hardI can’t find anything about this TeX error Emailing versions and comments back and forth The science is hardWhy won’t the table stay in the same place? How the hell do I get my plotting library to do that?
    35. 35. You are a scientist http://www.corbisimages.com/Enlargement/HU001769.html
    36. 36. You are a scientist http://www.corbisimages.com/Enlargement/HU001769.html
    37. 37. You are a scientistNot a typesetter http://www.corbisimages.com/Enlargement/HU001769.html
    38. 38. The Editor Landscape http://tutorialfreakz.com/wp-content/uploads/2009/08/Grassland-Landscape-Wallpaper.jpg
    39. 39. Spectrum http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    40. 40. Spectrum http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    41. 41. Spectrum http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    42. 42. Spectrum http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    43. 43. SpectrumWYSIWYG http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    44. 44. SpectrumWYSIWYG Document Source http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    45. 45. Spectrum WYSIWYG Document SourceMonolithic file http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    46. 46. Spectrum WYSIWYG Document SourceMonolithic file “Repository” http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    47. 47. Spectrum WYSIWYG Document Source Monolithic file “Repository”Has that shiny Microsoft look http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    48. 48. Spectrum WYSIWYG Document Source Monolithic file “Repository”Has that shiny Microsoft look Source looks insane, output is gorgeous http://nlu.nl.edu/careerservices/search/images/WordIcon.jpg
    49. 49. Hacksauce http://www.volkerschatz.com/tex/thacks.html
    50. 50. Formatting
    51. 51. Formatting should play no role while editing a paper
    52. 52. Having and Eating Cake
    53. 53. Having and Eating CakeWYSIWYG
    54. 54. Having and Eating CakeWYSIWYG Source control
    55. 55. Having and Eating Cake WYSIWYG Source controlPreset layout
    56. 56. Having and Eating Cake WYSIWYG Source control Sweet spotPreset layout
    57. 57. MODULES
    58. 58. from http://arxiv.org/abs/0906.3958
    59. 59. Modular web editor dedicated to scientific papers.
    60. 60. [screenshot]
    61. 61. [screenshot]
    62. 62. [screenshot]
    63. 63. Things you can do
    64. 64. Things you can do The power of the internets
    65. 65. Things you can do The power of the internetsPlanning for interactive plots (pan and zoom) with inline link to plotted data
    66. 66. Things you can do Syntax highlighting wizardry The power of the internetsPlanning for interactive plots (pan and zoom) with inline link to plotted data
    67. 67. Things you can do Syntax highlighting wizardry eventually interactive? The power of the internetsPlanning for interactive plots (pan and zoom) with inline link to plotted data
    68. 68. Version ControlIn the works, but it will be completely transparent to the user.Example Diff...
    69. 69. Modern Information http://www.tacc.utexas.edu/feature_stories/2008/powering_discoveries.php
    70. 70. Modern Information http://www.tacc.utexas.edu/feature_stories/2008/powering_discoveries.php
    71. 71. Modern Information Should have been like 5 years ago http://www.tacc.utexas.edu/feature_stories/2008/powering_discoveries.php
    72. 72. Pages?
    73. 73. Pages?Limitation of print.
    74. 74. Pages?Limitation of print.Presents problems: Breaks flow by introducing unnecessary gaps in content
    75. 75. Pages?Limitation of print.Presents problems: Breaks flow by introducing unnecessary gaps in content Items must be sized down to fit page (large tables, hi-res images)
    76. 76. Pages?Limitation of print.Presents problems: Breaks flow by introducing unnecessary gaps in content Items must be sized down to fit page (large tables, hi-res images) ... many things I could rant about for too long ...
    77. 77. Pages?Limitation of print.Presents problems: Breaks flow by introducing unnecessary gaps in content Items must be sized down to fit page (large tables, hi-res images) ... many things I could rant about for too long ... journals being able to charge a page cost
    78. 78. UI BLAH BLAH BLAH
    79. 79. β
    80. 80. β
    81. 81. βI really need feedback to make this useful.
    82. 82. βI really need feedback to make this useful.You can influence big design decisions.
    83. 83. βI really need feedback to make this useful.You can influence big design decisions.You can (maybe) give up LaTeX.
    84. 84. βI really need feedback to make this useful.You can influence big design decisions.You can (maybe) give up LaTeX. http://paperhustler.com/ @paperhustler
    85. 85. NEW PAPERS ON THE BLOCK
    86. 86. Web Full Text http://www.cell.com/fulltext/S0092-8674(11)00107-3
    87. 87. Web Full Text http://www.cell.com/fulltext/S0092-8674(11)00107-3
    88. 88. Web Full Text http://www.cell.com/fulltext/S0092-8674(11)00107-3
    89. 89. Web Full Text Richer content, much better reading experience, ... but needs work before it beats the PDF. http://www.cell.com/fulltext/S0092-8674(11)00107-3
    90. 90. Beyond The PDF
    91. 91. Beyond The PDFWorkshop at UCSD, January 19 - 21
    92. 92. Beyond The PDFWorkshop at UCSD, January 19 - 21All the open science usual suspects
    93. 93. Beyond The PDFWorkshop at UCSD, January 19 - 21All the open science usual suspectsBig product was “Research Objects of the Future”
    94. 94. Beyond The PDFWorkshop at UCSD, January 19 - 21All the open science usual suspectsBig product was “Research Objects of the Future” The La Jolla Manifesto (https://sites.google.com/site/beyondthepdf/home/program- draft/notes-from-the-breakout)
    95. 95. Research Objects
    96. 96. Research ObjectsReplayable – go back and see what happened
    97. 97. Research ObjectsReplayable – go back and see what happenedRepeatable – run the experiment again
    98. 98. Research ObjectsReplayable – go back and see what happenedRepeatable – run the experiment againReproducible – run new experiment to reproduce the results
    99. 99. Research ObjectsReplayable – go back and see what happenedRepeatable – run the experiment againReproducible – run new experiment to reproduce the resultsReusable – use as part of new experiments
    100. 100. Research ObjectsReplayable – go back and see what happenedRepeatable – run the experiment againReproducible – run new experiment to reproduce the resultsReusable – use as part of new experimentsRepurposeable – reuse the pieces in a new experiment
    101. 101. Research ObjectsReplayable – go back and see what happenedRepeatable – run the experiment againReproducible – run new experiment to reproduce the resultsReusable – use as part of new experimentsRepurposeable – reuse the pieces in a new experimentReliable – robust under automation
    102. 102. Modern InformationPapers are the preservation of science.Science must be reproducible.
    103. 103. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything.
    104. 104. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything. Procedure
    105. 105. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything. Procedure Raw Data
    106. 106. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything. Procedure Analysis Raw Data
    107. 107. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything. Procedure Processed Data Analysis Raw Data
    108. 108. Modern InformationPapers are the preservation of science.Science must be reproducible. ⇒ The paper should include everything. Procedure Processed Data Analysis Derivations Raw Data
    109. 109. Totality http://www.openresearchcomputation.com/
    110. 110. TotalityThe paper isn’t an overview - it’s the record of the entire project. http://www.openresearchcomputation.com/
    111. 111. TotalityThe paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.” http://www.openresearchcomputation.com/
    112. 112. Totality The paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.”Submission requirements: http://www.openresearchcomputation.com/
    113. 113. Totality The paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.”Submission requirements: •Code and license http://www.openresearchcomputation.com/
    114. 114. Totality The paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.”Submission requirements: •Code and license •Fully documented http://www.openresearchcomputation.com/
    115. 115. Totality The paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.”Submission requirements: •Code and license •Fully documented •100% test coverage of public functions http://www.openresearchcomputation.com/
    116. 116. Totality The paper isn’t an overview - it’s the record of the entire project. “publishes peer reviewed articles that describe the development, capacities, and uses of software designed for use by researchers in any field.”Submission requirements: •Code and license •Fully documented •100% test coverage of public functions •Example data and code http://www.openresearchcomputation.com/
    117. 117. The Future http://www.flixist.com/the-future-is-here-maybe-3d-without-3d-glasses-update--197839.phtml
    118. 118. Blogs? Great model for instant publication, but journals are centralized for a reason. http://terrytao.wordpress.com/
    119. 119. Open Notebook ScienceKeep extremelydetailed records asyou do research.“real-time research”Becoming seriousbusiness in chem http://usefulchem.wikispaces.com/dopal
    120. 120. “Paper 2.0”http://michaelnielsen.org/blog/scientific-communication/ http://www.geekologie.com/2010/04/26/magic-major.jpg
    121. 121. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions http://www.geekologie.com/2010/04/26/magic-major.jpg
    122. 122. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions Different content for different readers http://www.geekologie.com/2010/04/26/magic-major.jpg
    123. 123. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions Different content for different readers“Levels” http://www.geekologie.com/2010/04/26/magic-major.jpg
    124. 124. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions Different content for different readers“Levels” Choose how detailed you want your information http://www.geekologie.com/2010/04/26/magic-major.jpg
    125. 125. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions Different content for different readers“Levels” Choose how detailed you want your informationDistributed editing http://www.geekologie.com/2010/04/26/magic-major.jpg
    126. 126. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/Versions Different content for different readers“Levels” Choose how detailed you want your informationDistributed editingOpen, public annotation http://www.geekologie.com/2010/04/26/magic-major.jpg
    127. 127. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/ This would be amazing, but scientists already haveVersions no time writing the brief version of the paper Different content for different readers“Levels” Choose how detailed you want your informationDistributed editingOpen, public annotation http://www.geekologie.com/2010/04/26/magic-major.jpg
    128. 128. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/ This would be amazing, but scientists already haveVersions no time writing the brief version of the paper Different content for different readers“Levels” Choose how detailed you want your informationDistributed editingOpen, public annotation http://www.geekologie.com/2010/04/26/magic-major.jpg
    129. 129. “Paper 2.0” http://michaelnielsen.org/blog/scientific-communication/ This would be amazing, but scientists already haveVersions no time writing the brief version of the paper Different content for different readers“Levels” Choose how detailed you want your informationDistributed editingOpen, public annotation Still, it is what we should aim for. http://www.geekologie.com/2010/04/26/magic-major.jpg
    130. 130. SummaryScientists should never do an editor’s job.We are in need of a new model of the paper. At least an update on the technology behind them.Check out Paper Hustler for suping up your papers. http://thestarkeffect.com/ @caseywstark
    131. 131. SummaryScientists should never do an editor’s job.We are in need of a new model of the paper. At least an update on the technology behind them.Check out Paper Hustler for suping up your papers. http://thestarkeffect.com/ http://paperhustler.com/ @caseywstark @paperhustler

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