0
CMap BOSC 2008 Ben Faga
What is CMap? <ul><li>CMap is a web-based, comparative map viewer </li></ul>Data provided by the Gramene project (www.gram...
About CMap <ul><li>CMap is a component of the GMOD project which was originally developed for Gramene </li></ul><ul><li>CM...
CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
CMap Dotplot Data provided by the Gramene project (www.gramene.org)‏
Acknowledgments <ul><li>Doreen Ware and the Ware Lab </li></ul><ul><li>Lincoln Stein and the Stein Lab </li></ul><ul><li>G...
Upcoming SlideShare
Loading in...5
×

Faga C Map Bosc2008

473

Published on

Published in: Technology, Business
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total Views
473
On Slideshare
0
From Embeds
0
Number of Embeds
0
Actions
Shares
0
Downloads
2
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide

Transcript of "Faga C Map Bosc2008"

  1. 1. CMap BOSC 2008 Ben Faga
  2. 2. What is CMap? <ul><li>CMap is a web-based, comparative map viewer </li></ul>Data provided by the Gramene project (www.gramene.org)‏
  3. 3. About CMap <ul><li>CMap is a component of the GMOD project which was originally developed for Gramene </li></ul><ul><li>CMap is data type agnostic and can display comparisons of sequence, physical, genetic, etc data with each other. </li></ul><ul><li>CMap can use with most database management systems </li></ul><ul><li>CMap is freely available, under the GPL or the Artistic Licence 2.0. </li></ul>
  4. 4. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  5. 5. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  6. 6. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  7. 7. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  8. 8. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  9. 9. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  10. 10. CMap Dotplot Data provided by the Gramene project (www.gramene.org)‏
  11. 11. Acknowledgments <ul><li>Doreen Ware and the Ware Lab </li></ul><ul><li>Lincoln Stein and the Stein Lab </li></ul><ul><li>Gramene (www.gramene.org)‏ </li></ul><ul><li>GMOD (www.gmod.org)‏ </li></ul><ul><li>Ken Clark (original author of CMap)‏ </li></ul>www.gmod.org/CMap
  1. A particular slide catching your eye?

    Clipping is a handy way to collect important slides you want to go back to later.

×