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Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
Faga C Map Bosc2008
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Faga C Map Bosc2008

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  • 1. CMap BOSC 2008 Ben Faga
  • 2. What is CMap? <ul><li>CMap is a web-based, comparative map viewer </li></ul>Data provided by the Gramene project (www.gramene.org)‏
  • 3. About CMap <ul><li>CMap is a component of the GMOD project which was originally developed for Gramene </li></ul><ul><li>CMap is data type agnostic and can display comparisons of sequence, physical, genetic, etc data with each other. </li></ul><ul><li>CMap can use with most database management systems </li></ul><ul><li>CMap is freely available, under the GPL or the Artistic Licence 2.0. </li></ul>
  • 4. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  • 5. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 6. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 7. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 8. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 9. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  • 10. CMap Dotplot Data provided by the Gramene project (www.gramene.org)‏
  • 11. Acknowledgments <ul><li>Doreen Ware and the Ware Lab </li></ul><ul><li>Lincoln Stein and the Stein Lab </li></ul><ul><li>Gramene (www.gramene.org)‏ </li></ul><ul><li>GMOD (www.gmod.org)‏ </li></ul><ul><li>Ken Clark (original author of CMap)‏ </li></ul>www.gmod.org/CMap

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