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Faga C Map Bosc2008
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Faga C Map Bosc2008

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Transcript

  • 1. CMap BOSC 2008 Ben Faga
  • 2. What is CMap?
    • CMap is a web-based, comparative map viewer
    Data provided by the Gramene project (www.gramene.org)‏
  • 3. About CMap
    • CMap is a component of the GMOD project which was originally developed for Gramene
    • CMap is data type agnostic and can display comparisons of sequence, physical, genetic, etc data with each other.
    • CMap can use with most database management systems
    • CMap is freely available, under the GPL or the Artistic Licence 2.0.
  • 4. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  • 5. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 6. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 7. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 8. CMap Displaying a Sequence Assembly vs a FPC Maps Data provided by the Gramene project (www.gramene.org)‏
  • 9. CMap Displaying Synteny Data provided by the Gramene project (www.gramene.org)‏
  • 10. CMap Dotplot Data provided by the Gramene project (www.gramene.org)‏
  • 11. Acknowledgments
    • Doreen Ware and the Ware Lab
    • Lincoln Stein and the Stein Lab
    • Gramene (www.gramene.org)‏
    • GMOD (www.gmod.org)‏
    • Ken Clark (original author of CMap)‏
    www.gmod.org/CMap