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Running workflows through galaxy bosc presentation

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  • 1. Running Workflows through Taverna Server
    Donal Fellows
    The University of Manchester
  • 2. The Overall Picture
    User Workflows
    Web Portal
    Deployment Host
    Tomcat 6 Container+ CXF Framework
    Web Service
    Per-Run Taverna Workflow Engine
    Per User File Manager
    Taverna Server Webapp
    Document Store
    Common System Model
    Taverna Workbench (forthcoming)
    SOAP
    Common Management Model
    REST
    Jabber
    Atom
    JMX
    Database
    Ruby Client
  • 3. Taverna Server
    Serverized Taverna
    Multiuser
    Secured
    Runs Taverna Workflows away from the desktop
    REST and SOAP interfaces - Supports many clients
    We have Ruby and Java client libraries
    No favourite languages!
    Open to be used and changed
    LGPL 2.1
    Projects Using/Evaluating
    Taverna-Galaxy, NeISS, MethodBox, Next Generation Sequencing, HELIO, caBIG, EU IMPACT, …
  • 4. Ruby web interface
  • 5. Using in a Portal
    User goes to Portal
    Sees functionality provided by workflow
    Example: Get annotated SNPs for sample using Mouse baseline
    Clicks on Run it, provides data
    Taverna Server gets busy here…
    Waits for results
    Or gets notified (e.g., SMS, Twitter)
    Picks up results
    Example: Consequences of all changes across genome