Mobyle 1 0_new_features_new_types_of_service

Mobyle 1.0: new features, new types of services Hervé Ménager, Bertrand Néron, Vivek Gopalan, Sandrine Larroudé, Julien Maupetit, Adrien Saladin, Pierre Tuffery, Yentram Huyen, Bernard Caudron Bioinformatics Open Source Conference, July 15th, 2011

What is Mobyle

Providing an access to bioinformaticsresources for biologists ?

New types of services: Workflows● Beyond the existing "interactive pipe" functionality● Automated chaining or sequential/parallel jobs● base is the same XML description as the other types of services,● specificity: Execution specified as the coordinated execution of multiple tasks

Workflow forms

Workflow results

Workflow details and monitoring

Workflows portal integration ● In the portals left menu,searchable and sortable the same wayas programs. ● In the "interactive pipe" menus

Viewers: VARNA example

Viewers: implementation● base is the same XML description as the other types of services,● specificity: includes a template for a custom chunk of HTML code.

Other existing viewers

Soon: viewers are good, editors are better!

Other new features● Improved workspace management: ○ easier workspace cleanup ○ bookmark->service links● Execution engine flexibility ○ multiple DRMs configuration allowed and multi-DRM job routing. ○ new supported DRM: LSF● OpenID authentication thanks to Olivier Sallou● Google Analytics reporting integration (GenOuest)

Acknowledgements Institut Pasteur GenOuest Bertrand Néron Olivier Sallou Sandrine Larroudé Anthony Bretaudeau Corinne Maufrais Nicolas Joly NIAID BCBB Bernard Caudron Vivek Gopalan Sophie Créno Yentram Huyen NCSU And many others... Ignazio Carbone Trent Monacell RPBS Julien Maupetit Pierre Tufféry Adrien Saladin LIPM Toulouse Sébastien Carrère

Mobyle 1 0_new_features_new_types_of_service

by Bioinformatics Open Source Conference

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Mobyle 1 0_new_features_new_types_of_service Presentation Transcript