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Mobyle 1.0: new features, new types of services        Hervé Ménager, Bertrand Néron, Vivek  Gopalan, Sandrine Larroudé, J...
What is Mobyle
Providing an access to bioinformaticsresources for biologists                 ?
New types of services: Workflows● Beyond the existing  "interactive  pipe" functionality● Automated chaining or  sequentia...
Workflow forms
Workflow results
Workflow details and monitoring
Workflows portal integration ● In the portals left menu,searchable and sortable the same wayas programs. ● In the "interac...
Viewers: VARNA example
Viewers: implementation● base is the same XML description as the other types of  services,● specificity: includes a templa...
Other existing viewers
Soon: viewers are good, editors are better!
Other new features● Improved workspace management:    ○ easier workspace cleanup    ○ bookmark->service links● Execution e...
Acknowledgements  Institut Pasteur    GenOuest  Bertrand Néron      Olivier Sallou  Sandrine Larroudé   Anthony Bretaudeau...
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Mobyle 1 0_new_features_new_types_of_service

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Transcript of "Mobyle 1 0_new_features_new_types_of_service"

  1. 1. Mobyle 1.0: new features, new types of services Hervé Ménager, Bertrand Néron, Vivek Gopalan, Sandrine Larroudé, Julien Maupetit, Adrien Saladin, Pierre Tuffery, Yentram Huyen, Bernard Caudron Bioinformatics Open Source Conference, July 15th, 2011
  2. 2. What is Mobyle
  3. 3. Providing an access to bioinformaticsresources for biologists ?
  4. 4. New types of services: Workflows● Beyond the existing "interactive pipe" functionality● Automated chaining or sequential/parallel jobs● base is the same XML description as the other types of services,● specificity: Execution specified as the coordinated execution of multiple tasks
  5. 5. Workflow forms
  6. 6. Workflow results
  7. 7. Workflow details and monitoring
  8. 8. Workflows portal integration ● In the portals left menu,searchable and sortable the same wayas programs. ● In the "interactive pipe" menus
  9. 9. Viewers: VARNA example
  10. 10. Viewers: implementation● base is the same XML description as the other types of services,● specificity: includes a template for a custom chunk of HTML code.
  11. 11. Other existing viewers
  12. 12. Soon: viewers are good, editors are better!
  13. 13. Other new features● Improved workspace management: ○ easier workspace cleanup ○ bookmark->service links● Execution engine flexibility ○ multiple DRMs configuration allowed and multi-DRM job routing. ○ new supported DRM: LSF● OpenID authentication thanks to Olivier Sallou● Google Analytics reporting integration (GenOuest)
  14. 14. Acknowledgements Institut Pasteur GenOuest Bertrand Néron Olivier Sallou Sandrine Larroudé Anthony Bretaudeau Corinne Maufrais Nicolas Joly NIAID BCBB Bernard Caudron Vivek Gopalan Sophie Créno Yentram Huyen NCSU And many others... Ignazio Carbone Trent Monacell RPBS Julien Maupetit Pierre Tufféry Adrien Saladin LIPM Toulouse Sébastien Carrère
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