Martin Scharm

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combine archive version control reproducibility computational models systems biology difference detection computational biology provenance cellml bives combine simulation description reuse model managment research results budhat sems xml vivy trust tracker telematik sovereignty smartwatch siri selftracking security privacy health fitness fitbit data 23andme algorithm evolution simulation study modelling life science fairdom search and retrieval biomodels functional curation skype teaching docker metadata linked data ontology research object models masymos workflow keep history fallback git track changes model repositories statistics sharing collaboration sbml sysmo seek cellml workshop

Activity
About

Martin Scharm

Presentations

BiVeS & BudHat -- Version Control for Computational Models @ All hands PALs Meeting

BiVeS & BudHat @ Harmony2013

BiVeS & BudHat: Invited Talk @ IPK Gatersleben

BiVeS & BudHat @ Combine2013 in Paris

Improving the Management of Computational Models -- Invited talk at the EBI

CombineArchiveWeb -- web based tool to handle files associated with modelling results. -- DEMO at SWAT4LS 2014 in Berlin

The CellML models’ walk through the repository

HandsOn: git (or version control in general...)

M2CAT: Extracting reproducible simulation studies from model repositories using the CombineArchive Toolkit

M2CAT: Extracting reproducible simulation studies from model repositories using the CombineArchive Toolkit

Group meeting in Manchester.

Characterising differences between model versions

COMBINE (archive) meta data

Docker Demo @ IuK Seminar

Model Management in Systems Biology: Challenges – Approaches – Solutions

Improving Reproducibility and Reuse of Modelling Results in the Life Sciences

Vertrauen oder Kontrolle? Meine Gesundheitsdaten und ich

Likes

Modeling Bone Remodeling - The Influence of Microcracks

Reproducibility, dissemination, and management of modeling results

HandsOn: git (or version control in general...)