Green Station Overview Final

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Green Station Overview Final

  1. 1. Create, organize, preserve and find all of your work in a coherent energy-efficient environment G reen S tation A science-oriented implementation Confidential CytoGenie knowledge bases Online Data Dabris DataStore Offline DVD archive User CDs Online Data Science DataStore CERF knowledge bases FACS FacsXpert CERF My letters My manuscripts My grants My experiments My data My statististics FacsXpert CytoGenie
  2. 2. Work green Save a world of energy <ul><ul><li>G reen S tation </li></ul></ul><ul><ul><ul><ul><li>Occupies a single desktop or computer rack. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Requires no special air conditioning. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Requires no specially constructed facility. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Manages itself. Needs little staff care. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Keeps your entire archive at hand. No travel required. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Keeps only the active part of your archive spinning. </li></ul></ul></ul></ul>Confidential
  3. 3. Do you know where your data are? Do you know what was in your experiment? Will you know next week — or in fifteen years? Science DataStore Indexed, tamper-proof storage of large data files in a transparent self-managing on-line/off-line archive Confidential
  4. 4. A G reen S tation science configuration Confidential Sciene DataStore RAID User User User User User DVD or BluRay Robot Data collection instruments Client Client Data Processing Images Statistics Word processing Inventory management Instrument management Protocols CytoGenie CERF
  5. 5. A record of flawless performance Science DataStore has been running for over three years in the Stanford Shared FACS Facility, serving over 400 users and collecting over10GB of data from 8 different instruments every week It has not lost a single data bit Science DataStore Confidential
  6. 6. One-Click Archiving* Reliable energy-efficient data storage for FACS and other data Permanently store data right after collection Automatically attach protocol documents Take less than a minute to check in Upload in the background Free the instrument No downtime * after initial export from DiVa Science DataStore Confidential Click.
  7. 7. One-click compatibiity <ul><li>Off-the-shelf installation for FACS and other flow cytometers </li></ul><ul><li>Custom installation for other data-intensive technologies </li></ul><ul><li>No limitation on the amount of data stored </li></ul><ul><li>No limitation on the number of users </li></ul><ul><li>No limitation on the number of instruments that can be used simultaneously </li></ul>Science DataStore Confidential
  8. 8. One-click safety <ul><li>Automatically maintain at least two copies of all data and associated records </li></ul><ul><li>Automatically index and manage on-line and off-line data storage </li></ul><ul><li>Automatically create, verify, index and label </li></ul><ul><li>BluRay or DVD disks for on-site/offsite data stores (archives) </li></ul><ul><li>CD or DVD disks for individual users researchers </li></ul>Science DataStore Confidential Online Data Dabris DataStore Offline DVD archive User CDs Online Data Science DataStore
  9. 9. One-click compliant Accepts input only from authorized users and in authorized formats Signs and seals files in each submission and stores them in a tamper-proof format Meets strict regulatory requirements (site options for which to use) Science DataStore Online Data Dabris DataStore Offline DVD archive User CDs Online Data Science DataStore Confidential
  10. 10. Science DataStore confirmation email <ul><li>Announces that the data submission is safely archived </li></ul><ul><li>Summarizes the archived items and their labels </li></ul><ul><li>Provides internet-accessible links for the items </li></ul><ul><li>Download data and related information </li></ul><ul><li>Launch analyses </li></ul><ul><li>Send data access to collaborators </li></ul>One-click friendly Science DataStore Confidential
  11. 11. One click anywhere Science DataStore keeps a personal, password-protected index of your experiments online. The Internet-accessible index shows all of the sample labels and other information stored for each experiment. One click downloads the data files and accompanying information for an experiment, ready for analysis any time, anywhere. Science DataStore Click to view summary or download files. Confidential
  12. 12. Create, organize, preserve and find all of your work in one place Work seamlessly with CytoGenie and CERF CytoGenie knowledge bases Online Data Dabris DataStore Offline DVD archive User CDs Online Data Science DataStore CERF knowledge bases FACS FacsXpert CERF My letters My manuscripts My grants My experiments My data My statististics FacsXpert CytoGenie Confidential
  13. 13. <ul><li>Computer Aided Design for experiments </li></ul><ul><ul><ul><li>Experts enter instrument information about lasers, filters, instruments, fluorochrome spectra, etc. </li></ul></ul></ul><ul><ul><ul><li>Investigators enter the subject, sample and other information necessary for individual experiments. </li></ul></ul></ul><ul><ul><ul><li>CytoGenie helps the investigators compose stain sets, add necessary controls and make other experiment design choices to complete the protocol. </li></ul></ul></ul>CytoGenie Confidential
  14. 14. an intelligent software system that knows what you have to do to plan and execute simple or Hi-D FACS experiments … and helps you do it CytoGenie™ and ScienceDataStore are distributed by ScienceXperts and Tomy Digital Biology (Tokyo). CytoGenie Lab , the full CytoGenie version, is available free at ScienceXperts.com
  15. 15. Compose stain sets with CytoGenie Confidential
  16. 16. CERF <ul><ul><li>Protect precious intellectual assets. </li></ul></ul><ul><ul><li>Create them. Save them. Index them. Share them. </li></ul></ul><ul><ul><li>Securely store and find them all in Science DataStore. </li></ul></ul><ul><ul><li>Organize and manage all computerized information </li></ul></ul><ul><ul><li>from MS Word and Excel documents to complex multi-media databases, catalogs, and presentations. </li></ul></ul><ul><ul><li>Award-winning as an Electronic Laboratory Notebook </li></ul></ul>Confidential
  17. 17. CERF <ul><ul><ul><ul><li>Bring together and organize many different kinds of information. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Launch many different computer applications and track the output in the same environment. </li></ul></ul></ul></ul><ul><ul><ul><ul><li>Describe, index, and search for material in current use and in the Science DataStore archive. </li></ul></ul></ul></ul>Confidential
  18. 18. As a lab notebook Confidential
  19. 19. <ul><ul><li>DataStore - The energy-saving heart of the system </li></ul></ul><ul><ul><li>CytoGenie - To design protocols for flow cytometry </li></ul></ul><ul><ul><li>CERF - To manage just about everything else </li></ul></ul>GreenStation Confidential
  20. 20. <ul><li>A suitable dedicated server (desktop size if fine) </li></ul><ul><ul><ul><li>We currently recommend the latest version of the Dell PowerEdge configured to run Unix or Windows. A Mac server can also be used. </li></ul></ul></ul><ul><ul><ul><li>RAID disk array configured to hold the amount of data needed online. </li></ul></ul></ul><ul><li>A CD/DVD or BlueRay robotic printer (e.g. from Primera) </li></ul><ul><li>Modern Internet browser with which to view the online index </li></ul><ul><ul><ul><li>Microsoft Internet Explorer (Version 6 or later), FireFox (Version 1.5 or later), or similar. </li></ul></ul></ul><ul><ul><ul><li>Minimum 1024 x 768 screen resolution. </li></ul></ul></ul><ul><li>A typical high-speed Local Area Network — 100 mb or better </li></ul><ul><li>Installation access on the instrument interface computer(s) </li></ul><ul><ul><ul><li>Windows (XP or later) or Mac (OS 10.4 or later). </li></ul></ul></ul>Work with a minimum of equipment Confidential
  21. 21. Science DataStore The energy-saving heart of the G reen S tation Currently implemented for flow cytometry Readily adaptable for many other applications Confidential

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