MYB Transcription Factors: A [Comparative] Genome-wide Account in Arabidopsis thaliana

723 views
576 views

Published on

MYB Transcription Factors:
A [Comparative] Genome-wide Account in Arabidopsis thaliana: 16th August, CCB@USM, Biswapriya B. Misra, Ph.D.

0 Comments
2 Likes
Statistics
Notes
  • Be the first to comment

No Downloads
Views
Total views
723
On SlideShare
0
From Embeds
0
Number of Embeds
3
Actions
Shares
0
Downloads
0
Comments
0
Likes
2
Embeds 0
No embeds

No notes for slide

MYB Transcription Factors: A [Comparative] Genome-wide Account in Arabidopsis thaliana

  1. 1. MYB Transcription Factors:A [Comparative] Genome-wideAccount in Arabidopsis thaliana Biswapriya Biswavas Misra, Ph.D. CCB 16th August, 2012
  2. 2. Typical Gene StructureA. thaliana’s MYB Transcription Factors: Functional Annotations
  3. 3. MYB Transcription Factors: Distribution Across Sequenced Genomes- The Number Game
  4. 4. A. thaliana’s MYB Orthologs Across Sequenced Genomes
  5. 5. MYB Transcription Factors: Distribution of Promoter Elements of Genes in A. thaliana Genome
  6. 6. GO FAT (Biological Process) Analyses of A. thaliana’s MYBs
  7. 7. GO FAT (Molecular Function) Analyses of A. thaliana’s MYBsGO FAT (Cellular Component) Analyses of A. thaliana’s MYBs
  8. 8. PFAM Domain Enrichment Analyses of A. thaliana’s MYBsInterPro Domain Enrichment Analyses of A. thaliana’s MYBs
  9. 9. PROFILE Enrichment Analyses of A. thaliana’s MYBsSMART Enrichment Analyses of A. thaliana’s MYBs PROSITE Enrichment Analyses of A. thaliana’s MYBs
  10. 10. A. thaliana’s MYB Transcription Factors: Interacting Neighbors Protein-protein Interactions
  11. 11. KEGG Pathway Mapping of A. thaliana’s MYBs -Representative; *
  12. 12. A. thaliana’s MYB Transcription Factors: GO Distribution
  13. 13. A. thaliana’s MYB Transcription Factors: Snapshot of GO Networks
  14. 14. A. thaliana’s MYB Transcription Factors: GO Classification & Distribution
  15. 15. A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
  16. 16. A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
  17. 17. MYB Transcription Factors [HOM000007] Distribution in Arabidopsis thaliana [Chromosomes]
  18. 18. MYB Transcription Factors [HOM000007] Distribution in Ricinus communis [Scaffolds] Reduced Number of MYB in Spurge family Members ?
  19. 19. MYB Transcription Factors [HOM000007] Distribution in Manihot esculenta [Scaffolds] Reduced Number of MYB in Spurge family Members ?
  20. 20. MYB Transcription Factors [HOM000007] Distribution in Populus trichocarpa [Linkage groups/Pseudo chromosomes] …but NOT in case of Salicoids ?
  21. 21. MYB Transcription Factors: Structure-based phylogenomics in Arabidopsis thaliana and Oryza sativa
  22. 22. MYB Transcription Factors: Structure-based phylogenomics in Arabidopsis thaliana and Oryza sativa
  23. 23. Stress Responsiveness of AT1G01060
  24. 24. Developmental Expression Profile of AT1G01060
  25. 25. Expression Profiling Across Multiple Parameters for an A. thaliana MYB: At1G01060
  26. 26. Developmental Expression Profile MAP of AT1G01060
  27. 27. Expression Profiling Across of A. thaliana MYB : AT1G17460 Plant & Tissue -specific Expression
  28. 28. Cell type Specific Comparative Expression Profiling of A. thaliana MYB : AT5G53200
  29. 29. Root Tip Specific Comparative Expression Profiling of A. thaliana MYB : AT5G53200
  30. 30. Sub-cellular Localization of a Few A. thaliana MYBs
  31. 31. Interactome of A. thaliana MYBs in Clusters ? In Matured Pollens…. [red-higher to fainter-lower]
  32. 32. Co-expressed Gene Network of AT1G01060
  33. 33. Thank YouNote: Study is based solely on Publicly available Databases, Platforms/ Softwares, Sequences, Codes, Programs and Information and are exclusively GENERATED. Appropriate sources are thanked. Follow the Ideas- as SKY is the Limit !More INTERESTING & RELEVANT ONES are on the Cards ! Happy Following!!!

×