MYB Transcription Factors:A [Comparative] Genome-wideAccount in Arabidopsis thaliana       Biswapriya Biswavas Misra, Ph.D...
Typical Gene StructureA. thaliana’s MYB Transcription Factors: Functional                   Annotations
MYB Transcription Factors: Distribution Across  Sequenced Genomes- The Number Game
A. thaliana’s MYB Orthologs Across Sequenced Genomes
MYB Transcription Factors: Distribution of Promoter    Elements of Genes in A. thaliana Genome
GO FAT (Biological Process) Analyses of A. thaliana’s MYBs
GO FAT (Molecular Function) Analyses of A. thaliana’s MYBsGO FAT (Cellular Component) Analyses of A. thaliana’s MYBs
PFAM Domain Enrichment Analyses of A. thaliana’s MYBsInterPro Domain Enrichment Analyses of A. thaliana’s MYBs
PROFILE Enrichment Analyses of A. thaliana’s MYBsSMART Enrichment Analyses of A. thaliana’s MYBs PROSITE Enrichment Analys...
A. thaliana’s MYB Transcription Factors: Interacting Neighbors                                    Protein-protein Interact...
KEGG Pathway Mapping of A. thaliana’s MYBs            -Representative;   *
A. thaliana’s MYB Transcription Factors: GO Distribution
A. thaliana’s MYB Transcription Factors:        Snapshot of GO Networks
A. thaliana’s MYB Transcription Factors:    GO Classification & Distribution
A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
MYB Transcription Factors [HOM000007] Distribution in       Arabidopsis thaliana [Chromosomes]
MYB Transcription Factors [HOM000007] Distribution in Ricinus                   communis [Scaffolds]                      ...
MYB Transcription Factors [HOM000007] Distribution in Manihot                    esculenta [Scaffolds]                    ...
MYB Transcription Factors [HOM000007] Distribution in Populus     trichocarpa [Linkage groups/Pseudo chromosomes]         ...
MYB Transcription Factors: Structure-based phylogenomics in          Arabidopsis thaliana and Oryza sativa
MYB Transcription Factors: Structure-based phylogenomics in          Arabidopsis thaliana and Oryza sativa
Stress Responsiveness of AT1G01060
Developmental Expression Profile of AT1G01060
Expression Profiling Across Multiple Parameters for         an A. thaliana MYB: At1G01060
Developmental Expression Profile MAP of AT1G01060
Expression Profiling Across of A. thaliana MYB : AT1G17460                      Plant & Tissue -specific Expression
Cell type Specific Comparative Expression Profiling         of A. thaliana MYB : AT5G53200
Root Tip Specific Comparative Expression Profiling        of A. thaliana MYB : AT5G53200
Sub-cellular Localization of a Few A. thaliana MYBs
Interactome of A. thaliana MYBs in Clusters ?                In Matured Pollens…. [red-higher to fainter-lower]
Co-expressed Gene Network of AT1G01060
Thank YouNote: Study is based solely on Publicly available Databases,  Platforms/ Softwares, Sequences, Codes, Programs an...
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MYB Transcription Factors: A [Comparative] Genome-wide Account in Arabidopsis thaliana

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MYB Transcription Factors:
A [Comparative] Genome-wide Account in Arabidopsis thaliana: 16th August, CCB@USM, Biswapriya B. Misra, Ph.D.

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Transcript of "MYB Transcription Factors: A [Comparative] Genome-wide Account in Arabidopsis thaliana"

  1. 1. MYB Transcription Factors:A [Comparative] Genome-wideAccount in Arabidopsis thaliana Biswapriya Biswavas Misra, Ph.D. CCB 16th August, 2012
  2. 2. Typical Gene StructureA. thaliana’s MYB Transcription Factors: Functional Annotations
  3. 3. MYB Transcription Factors: Distribution Across Sequenced Genomes- The Number Game
  4. 4. A. thaliana’s MYB Orthologs Across Sequenced Genomes
  5. 5. MYB Transcription Factors: Distribution of Promoter Elements of Genes in A. thaliana Genome
  6. 6. GO FAT (Biological Process) Analyses of A. thaliana’s MYBs
  7. 7. GO FAT (Molecular Function) Analyses of A. thaliana’s MYBsGO FAT (Cellular Component) Analyses of A. thaliana’s MYBs
  8. 8. PFAM Domain Enrichment Analyses of A. thaliana’s MYBsInterPro Domain Enrichment Analyses of A. thaliana’s MYBs
  9. 9. PROFILE Enrichment Analyses of A. thaliana’s MYBsSMART Enrichment Analyses of A. thaliana’s MYBs PROSITE Enrichment Analyses of A. thaliana’s MYBs
  10. 10. A. thaliana’s MYB Transcription Factors: Interacting Neighbors Protein-protein Interactions
  11. 11. KEGG Pathway Mapping of A. thaliana’s MYBs -Representative; *
  12. 12. A. thaliana’s MYB Transcription Factors: GO Distribution
  13. 13. A. thaliana’s MYB Transcription Factors: Snapshot of GO Networks
  14. 14. A. thaliana’s MYB Transcription Factors: GO Classification & Distribution
  15. 15. A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
  16. 16. A. thaliana’s MYB Transcription Factors:Synteny Across Genomes [Example- AT1G01060]
  17. 17. MYB Transcription Factors [HOM000007] Distribution in Arabidopsis thaliana [Chromosomes]
  18. 18. MYB Transcription Factors [HOM000007] Distribution in Ricinus communis [Scaffolds] Reduced Number of MYB in Spurge family Members ?
  19. 19. MYB Transcription Factors [HOM000007] Distribution in Manihot esculenta [Scaffolds] Reduced Number of MYB in Spurge family Members ?
  20. 20. MYB Transcription Factors [HOM000007] Distribution in Populus trichocarpa [Linkage groups/Pseudo chromosomes] …but NOT in case of Salicoids ?
  21. 21. MYB Transcription Factors: Structure-based phylogenomics in Arabidopsis thaliana and Oryza sativa
  22. 22. MYB Transcription Factors: Structure-based phylogenomics in Arabidopsis thaliana and Oryza sativa
  23. 23. Stress Responsiveness of AT1G01060
  24. 24. Developmental Expression Profile of AT1G01060
  25. 25. Expression Profiling Across Multiple Parameters for an A. thaliana MYB: At1G01060
  26. 26. Developmental Expression Profile MAP of AT1G01060
  27. 27. Expression Profiling Across of A. thaliana MYB : AT1G17460 Plant & Tissue -specific Expression
  28. 28. Cell type Specific Comparative Expression Profiling of A. thaliana MYB : AT5G53200
  29. 29. Root Tip Specific Comparative Expression Profiling of A. thaliana MYB : AT5G53200
  30. 30. Sub-cellular Localization of a Few A. thaliana MYBs
  31. 31. Interactome of A. thaliana MYBs in Clusters ? In Matured Pollens…. [red-higher to fainter-lower]
  32. 32. Co-expressed Gene Network of AT1G01060
  33. 33. Thank YouNote: Study is based solely on Publicly available Databases, Platforms/ Softwares, Sequences, Codes, Programs and Information and are exclusively GENERATED. Appropriate sources are thanked. Follow the Ideas- as SKY is the Limit !More INTERESTING & RELEVANT ONES are on the Cards ! Happy Following!!!

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