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Research Experience

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This is the illustration of my 5 projects related to Biomedical Engineering.

This is the illustration of my 5 projects related to Biomedical Engineering.

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Research Experience Research Experience Presentation Transcript

  • Tingting Xu Research Experience 2 papers submitted Skills involved: Biomedical Experiments, ComputerImage Processing, Matlab programming
  • Project 1:Using Cellulose Acetate MembranceElectrophoresis to Separate SerumProteins
  • • Introduction Before the summer holiday of my second year in university, I was selected as student leader for the biomedical experiment teaching assistant. In the summer vacation, we, the TAs did not have a holiday. Instead, we did basic teaching experiments that using cellulose acetate membrance electrophoresis to seperate serum proteins. After that, we taught the BME department students (150 people) how to conduct this experiment and marked their homework. View slide
  • Instruments & Materials• Instruments: 220V DC electrical source, Electrophoresis tank View slide
  • Acetate film, Glass capillary, Filter paperReagent: Serum, electrophoretic buffer, dyeing liquor,rinsing water
  • Methods1. Preparation work We first connect the DC electrical source and the Electrophoresis tank. After that, we cut the filter paper into double deck banded paper and Fill the tank with electrophoretic buffer.
  • 2. Point sample At this section, we use the glass capillary to absorb the serum and uniformly sample the serum on the Acetate film by the sheet glass.
  • 3. Electrophoresis After the investigation on the influence of several factors to the result of electrophoresis, we find the best condition for electrophoresis. 110 Voltage Direct Current, 1 Hour Electrophoresis
  • 4. Dye and Rinse Prepared dyeing liquor and rinsing water are applied in this section. After the rinsing is done, we can see the separated five components of serum protein.
  • Results
  • ConclusionFrom this experience I learned the importance of teamcooperation. Without the hard working of all the membersin our group, we can not make it such a success.What is more, I learned how to do academic researchmyself. Suitable design and planning is the prerequisite of agood experiment. This includes taking consideration of thevariables, like the voltage magnitude, electrophoresis timeand so on.All in all, the results demonstrate that we successfullyseparate the serum protein by using the Cellulose AcetateMembrance Electrophoresis.
  • Project2:Preparation and Transformation ofE.coli CompetencePurpose 1. Learn and acquire the steps to prepare the E.coli Competence 2. Understand the theory of how to transform E.coli into competence phase and combine it with plasmid DNA.
  • Theory for Preparation andtransformation This figure shows the main steps for transform E.coli into intergrated E.coli and Plasmid DNA phase. Firstly, it is essential to prepare the E.coli inot competence E.coli phase by controlling temperature and mixture. Then, after the preparation, plasmid DNA and E.coli can be combined easily since the E.coli is in the competence phase.
  • Detailed Steps and Condition fortransformation1. Cultivation of the E.coli Take one pure colony from the E.coli into 2ml LB culture medium. Shake overnight at 37℃ until it comes into the exponential phase.2. Prepare the competence phase E.coli Put the LB medium in a centrifugal tube on the ice for 10 minutes. Then centrifugate it under 4 ℃ at a speed of 3000 revolutions per minute. Use CaCl2 solution to increase the permeability of E.coli to make it a competence phase.3. Transformation Mix the competence phase E.coli and PBS plasmid DNA solution in water bath for 90 seconds under 42℃ or 5 minutes under 37℃.
  • ReseltsWe have done several control experiments tosee wether the E.coli have transformed andsuccessfully combined the plasmid DNA bycultivating them with the ampicillin medium.This medium would kil the E.coli without PBSplasmid DNA, while the transformed E.coli canprosper.
  • These two figures are the well grown sample of E.coli (right one) andkilled E.coli (left one) when put into ampicillin medium.
  • This is the tableillustrates the result ofour comparisonexperiments. We havemade eight experimentsgroup numbered. Thevariables are the E.coli,Amp condition andPlasmid DNA. + standsfor adding this variablein the group, - stands fornone.From the growingcondition of the E.coli wecan see thetransformation conditionand wether E.coli hasinserted plasmid DNAinto its own.
  • Teaching the studentsSince I have been the teaching assistant once, I am more familiar with thethings that a TA should do. Our job not only contains preparingteaching for classes, but also the enhancement of the quality of teaching.We arrange some students to do the experiment earlier than others toguarantee a time difference to improve the efficiency for using thecentrifuge.Being the TA, I can also feel the hard work of the teachers. We have toprepare early in the morning before the students arrived. This includes thereaction solution and equipment such as centrifuge and centrifuge tube.I want to thank Miss Jin Xiao for giving me this chance to be the TeachingAssistant. I leant to do academic experiments and to lead a group to workactively and creatively.Thank you for your attention!
  • Project3: Combination and propertyinvestigation of conA and nanofluorescent probe
  • I just illustrate the concept and outline of our project since the detailed preparing process is a little complicated and unimportant compared to the innovative idea.Purpose Preparation of conA-linked, high-performance quantum dot.
  • Methods• Because the conA can not be linked BS to quantum dots conA BS A BS directly, we used A A Bovine serum albumin (BSA) as a bridge to combine conA them together. BS BS• Firstly, we A A linked conA and BSA BS BSA as a whole, as A shown in the following figure.
  • Secondly, BSA and QD are linked up.
  • Detection of the conjuction of QD and conA• This section is mainly designed to test the conjunction of QD and conA, which also is my main job.• The method we utilized is sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE).
  • • Here is the instrument for the electrophor esis.
  • Above is one of the results for the electrophoresis. The first one from the right is made of conA, the second one is conA and QD, the third one is conA linked QD by Glutaraldehyde, the last one is QD and Glutaraldehyde From the third one from the right we can see that QD and conA are successfully linked together. If they are separated, there would be a band in the down area like all the three other groups.
  • Project 4:A two dimensional visualizationof the propagating speed of corticalspreading depression in rat cortex
  • IntroductionCharacterized by EEG depression, temporary disruption of ionhomeostasis, DC potential shift and the change of opticalintrinsic signals, CSD is a transient suppression of neuronalactivity and spreads like a wave from a focal point toward theperiphery at a speed of 2–5 mm/min.Previous studies have focused on the propagation speed ofCSD by only manually choosing several points in the CSD-invaded cortex to estimate its average speed.We aim to visualize propagation speed of CSD with twodimensions over the imaged cortex.
  • Materials and MethodsA. Origin site estimation of CSD Temporal clustering analysis (TCA) and least square estimation (LSE) are combined to determine the pixel location of the pinprick point according to our previous works.B. Coordinate transformation The coordinate (x1,y1) of Pixel 1 can be converted to polar coordinate (R,θ) as following equation:
  • Fig. 1: Coordinate transformation is illustrated in a raw optical image of the rat cortex.
  • C. Temporal lag Recognition Fig. 2: Using OISI signal to estimate the time lag for CSD propagation. (A)Normalized intensity of light signal for Pixel1 and Pixel2. The black squares are thepoints which have the highest intensity. (B) Using the correlation coeffient for time interval calculation. The red line shows the template part from Pixel1, stepping along the Pixel2, which is the target.
  • ResultsFor one representative CSD imaging trial, we usedour method for propagating speed calculation (Fig. 3). Fig. 3 Spatiotemporal evolution of a typical CSD wave.
  • Basing on this dataset, we obtained two images (120×160 pixels) represent the diffusion velocity of CSD at each pixel. The picture was visualized based on the propagation speed of CSD at every pixel in the image. It had been smoothed by using a sliding 3 by 3 window. Fig. 4 The two dimensional visualization of the spreading speed of CSD on theimaged cortex are presented. The left figure is obtained using the second method described above, while the right figure was calculated by applying the first approach.
  • From the time course of light reflectance variancein ROI 1, 2 and 3, we knew that CSD had thefastest speed in ROI 1 and the speed in ROI 3 wasthe slowest, which is consistent with thevisualization level in these two figures (Fig. 4). Fig. 5: The normalized optical reflectance during the time course of Pixel1 and Pixel2 in ROI 1, ROI 2 and ROI 3 region. The right down figure is the raw picture of the imaged cortex with a scale of 0 to 4. The black box with white number shows the region it represents and two white dots are the Pixel1 and Pixel2. The white dot which is nearer to the pinprick is Pixel1 and the other is Pixel2.
  • DISCUSSIONIn conventional method, randomly chosenpoints in the areas of the cortex could onlyrepresent the velocity in limited region andneglect the heterogeneous pattern of the speedof CSD over the whole cortex. This twodimensional visualization of CSD propagatingspeed can help us map the abnormal regions andunderstand the propagation mechanism of CSDbetter.
  • Project 5:Image registrationThe purpose of this project is to investigatethe principle and theory for communicationbetween rat olfactory bulb and the brain. Twosourses of lights, the fluorescence andreflection light are used to illuminate the openbrain. The two kinds of light resources mayprovide individual information aboutthe physiological reacion.
  • • My job is to do image registration because there are difference between the two imaging camera, such as size and magnification times. This work is a little like image processing. I first did some simple tests like using magzines for image registration and the results turned well.
  • Then, I registered the images obtained in the experiment.