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Beyond the PDF 2, 2013
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Beyond the PDF 2, 2013

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  • 1. Embedding  underpinning  mechanisms   for  data  reuse  and     reproducibility  in  bioscience   The  ISA  Exemplar     (Inves=ga=on/Study/Assay)   -­‐behind  the  PDF-­‐     Alejandra  González-­‐Beltrán,  PhD   Oxford  e-­‐Research  Centre,  University  of  Oxford,  UK   Beyond  the  PDF  2,  Amsterdam,  Netherlands,  March  20th  2013  
  • 2. Source  of  the  figure:  EBI  website   Bioscience      Mul=ple  domains      Mul=ple  communi=es      Mul=ple  technologies      Mul=ple  data  types      Mul=ple  data  formats      Mul=ple  data  repositories      …   Community  engagement   ISA     infrastructure  Generic  format  for     Open  source  rich  experimental   soVware  tools    descrip=ons  
  • 3. Minimise  the  burden    and  provide  tools  and  incen=ves  for     repor=ng,  cura=ng,  sharing   data  and  metadata  of  bioscience     experiments     to  enable  the     comprehension,  re-­‐use  of  data   in  subsequent  inves=ga=ons   and  reproducibility  of  bioscience    
  • 4. Community  engagement   community  standards   use  cases  
  • 5. Community  engagement   community  standards   use  cases  
  • 6. Community  engagement   community  standards   use  cases  
  • 7. Community  engagement   community  standards   use  cases  
  • 8. Experimental  descrip=on   provenance/aZribu=on    tracking   aggrega=on:   workflow   publica=ons,  data   samples    characteris=cs   community     standards   experimental    design   +  sta=s=cal     ontology   methods    annota=ons   …   cura=on  at  source   incremental  across  the  research  cycle   (from  planning/grant  wri=ng  up  to  manuscripts   publica=on  and  beyond)  
  • 9. collaborate   query   visualize   store   filter   share   create   analyse  curate   submit   research   objects   nanopub   share   query   integrate   link   infer  
  • 10. research   objects  
  • 11. g   n  u nderlyin links  betwee ds  and   ho d ata/met   pub lica=onsresearch   objects  
  • 12. Follow  us:  @isatools  @biosharing                    Find  us:  isa-­‐tools.org      isacommons.org      biosharing.org