Galaxy workshop
Upcoming SlideShare
Loading in...5
×
 

Galaxy workshop

on

  • 141 views

 

Statistics

Views

Total Views
141
Views on SlideShare
141
Embed Views
0

Actions

Likes
0
Downloads
1
Comments
0

0 Embeds 0

No embeds

Accessibility

Upload Details

Uploaded via as Adobe PDF

Usage Rights

© All Rights Reserved

Report content

Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
  • Full Name Full Name Comment goes here.
    Are you sure you want to
    Your message goes here
    Processing…
Post Comment
Edit your comment

Galaxy workshop Galaxy workshop Presentation Transcript

  • Agenda: second half of the day Bioinformatics runs and workflows ! Overview of the Galaxy project ! Tailoring a Galaxy on the Cloud instance with new tools from the Galaxy Tool Shed
  • Hands On: Basic Analysis On human chromosome 22, which coding exons have the most SNPs in them? !
  • A Rough Plan • Get some data • Coding exons on chromosome 22 • SNPs on chromosome 22 • Mess with it • Identify which exons have SNPs • Count SNPs per exon • Visualize our results View slide
  • Exons, from UCSC SNPs, from UCSC View slide
  • Exons, from UCSC SNPs, from UCSC Exons, from UCSC SNPs, from UCSC Overlap pairings
  • Exons, from UCSC SNPs, from UCSC Exons, from UCSC SNPs, from UCSC Overlap pairings 1 1 2 Exon overlap counts
  • 1 1 2 Exon overlap counts Exons, from UCSC
  • 1 1 2 Exon overlap counts Exons, from UCSC 1 1 2 0 0 0 Join on exon name
  • 1 1 2 Exon overlap counts Exons, from UCSC 1 1 2 0 0 0 1 1 2 Join on exon name Rearrange columns w/ cut
  • Your turn http://usegalaxy.org/galaxy101 !