QTPIE and water (Part 1) - Presentation Transcript
QTPIE and water Jiahao Chen October 23, 2007
“ To include polarization [in force fields] is to model not only the forces or energetics but also the electronic structure.” Clifford E. Dykstra Chem. Rev. 93 (1993), 2339-53
I. Tying up some loose ends Choosing a better definition of f ij
The QTPIE model Coulomb integral Slater-type orbitals Charge-transfer variables Attenuated electronegativity Overlap integral “ Variationally solved”: Minimize E to solve for charge distribution
Scaling the Slater exponent
Normalizing the attenuator fij
How to pick k ij ?
Most na ïve choice: k ij = 1
Planar water chains
A better choice of k ij
Recall for QEq:
Comparing with QTPIE (rightmost):
Want agreement at some geometry:
A better choice of k ij (cont’d)
Within QTPIE, there is a natural choice of length scale for each pair of atoms:
A better choice of k ij :
Result of new f ij
II. Practical QTPIE Summary: QTPIE doesn’t have to be more expensive than Hartree-Fock
“ It is a wondrous human characteristic to be able to slip into and out of idiocy many times a day without noticing the change or accidentally killing innocent bystanders in the process.” Scott Adams, The Dilbert Principle
How we first solved QTPIE
1. Solve for charge-transfer variables { p ji }
(standard linear algebra problem: A x + b =0)
2. Sum to get atomic partial charges { q i }
Numerical issues
The problem is numerically unstable
The matrix A is singular & rank deficient
The unknowns { p ij } are redundant: for N atoms, have N(N-1)/2 unknowns but only N -1 linearly independent { p ij }
The usual solution for numerically awkward problems is SVD, but can we do better?
Rank-revealing QR decomposition
QR decomposition factorizes an arbitrary full-rank (complex) square matrix into an orthogonal matrix Q and an upper triangular matrix R
Rank-revealing QR decomposition uses column pivoting to delay processing of zeroes
Rank-revealing QR decomposition
From the RRQR factorization, we can construct a projection of A onto the nonzero subspace
Only the rows of Q spanning span( P ) contribute, so can omit the other rows:
The projected equations
We can then rewrite the equations as
Since this full-rank, symmetric and real, we can solve this with Cholesky decomposition
Use DGELSY in LAPACK
Performance issues
O( N 6 ) computational complexity!
Not practical
Why bother? Na ïve HF has only O( N 3 ) complexity!
Can we write down equations with N -1 unknowns?
Relating { p ji } and { q i }
Write the relation as a matrix T :
The inverse relation is given by T -1 :
T is (usually) not square, so T -1 is a pseudoinverse, not a regular inverse
The solution
It turns out that it can be shown that
Therefore,
The equations in terms of { q i }
We get N simultaneous equations
with 1 constraint on the total charge (enforce either with a Lagrange multiplier or by substitution)
Computer time
III. Interlude How to construct the STO-1G basis set
Constructing a Gaussian basis
STO-1G basis set *
Maximize overlap integral
After some algebra, want to solve
*A. Szabo, N. S. Ostlund, Modern Quantum Chemistry , Dover, 1982 , Table 3.1, p.157.
The STO-1G basis set Integrals being coded… results soon! 0.1165917484 7 0.1315902101 6 0.1507985107 5 0.1760307725 4 0.2097635701 3 0.2527430925 2 0.2709498089 1 n
IV. Electrostatics of QTPIE-water Image credit: J. Phys. D: Appl. Phys. 40 (2007) 6112–6114
“ Water is a very fundamental substance[3].” E. V. Tsiper, Phys. Rev. Lett. 94 (2005), 013204 [3] Genesis 1:1-2
Cooperative polarization
Dipole moment of water increases from 1.854 Debye 1 in gas phase to 2.95±0.20 Debye 2 at r.t.p. liquid phase
Polarization enhances dipole moments
Water models with implicit or no polarization can’t describe local electrical fluctuations
1 D. R. Lide, CRC Handbook of Chemistry and Physics , 73rd ed., 1992 . 2 A. V. Gubskaya and P. G. Kusalik, J. Chem. Phys. 117 (2002) 5290-5302. +
Choosing parameters
Reproduce ab initio electrostatics
Dipole moments, polarizabilities
Water monomer only
20.680 10.125 8.285 4.960 new 13.364 8.741 13.890 4.528 QEq O O H H eV
Calculating dipoles and polarizabilities
For the point charges, the dipole is
And the polarizability is
“Distributed” properties
Instead of calculating properties of the whole system directly, calculate them as a sum of molecular properties
Define sum centered on molecular centers of mass; e.g. for dipole,
Mean dipole moment per water planar
Mean dipole moment per water twisted
TIP3P/QTPIE doesn’t predict polarizabilities well
Identical to TIP3P/QEq
No out of plane polarizability
In-plane components underestimated
twisted planar out of plane in plane dipole axis
Out-of-plane polarizability per water planar
Out-of-plane polarizability per water twisted
In-plane polarizability per water planar
In-plane polarizability per water twisted
Dipole-axis polarizability per water planar
Dipole-axis polarizability per water twisted
Lack of translational invariance
Polarizabilities are supposed to be translationally invariant, but ours aren’t!
Water 0.000 14.994 1.176 3.369 D 0.000 14.994 1.176 3.369 C Using numerical finite field 0.000 0.326 23.660 1.684 D 0.000 0.326 0.058 1.684 C Using analytic point charges 1.363 1.474 1.419 1.864 D 1.363 1.474 1.419 1.864 C zz /Å 3 yy /Å 3 xx /Å 3 d/D
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