QTPIE and water (Part 1)

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    QTPIE and water (Part 1) - Presentation Transcript

    1. QTPIE and water Jiahao Chen October 23, 2007
    2. “ To include polarization [in force fields] is to model not only the forces or energetics but also the electronic structure.” Clifford E. Dykstra Chem. Rev. 93 (1993), 2339-53
    3. I. Tying up some loose ends Choosing a better definition of f ij
    4. The QTPIE model Coulomb integral Slater-type orbitals Charge-transfer variables Attenuated electronegativity Overlap integral “ Variationally solved”: Minimize E to solve for charge distribution
    5. Scaling the Slater exponent
    6. Normalizing the attenuator fij
      • How to pick k ij ?
      • Most na ïve choice: k ij = 1
    7. Planar water chains
    8. A better choice of k ij
      • Recall for QEq:
      • Comparing with QTPIE (rightmost):
      • Want agreement at some geometry:
    9. A better choice of k ij (cont’d)
      • Within QTPIE, there is a natural choice of length scale for each pair of atoms:
      • A better choice of k ij :
    10. Result of new f ij
    11. II. Practical QTPIE Summary: QTPIE doesn’t have to be more expensive than Hartree-Fock
    12. “ It is a wondrous human characteristic to be able to slip into and out of idiocy many times a day without noticing the change or accidentally killing innocent bystanders in the process.” Scott Adams, The Dilbert Principle
    13. How we first solved QTPIE
      • 1. Solve for charge-transfer variables { p ji }
      • (standard linear algebra problem: A x + b =0)
      • 2. Sum to get atomic partial charges { q i }
    14. Numerical issues
      • The problem is numerically unstable
        • The matrix A is singular & rank deficient
        • The unknowns { p ij } are redundant: for N atoms, have N(N-1)/2 unknowns but only N -1 linearly independent { p ij }
      • The usual solution for numerically awkward problems is SVD, but can we do better?
    15. Rank-revealing QR decomposition
      • QR decomposition factorizes an arbitrary full-rank (complex) square matrix into an orthogonal matrix Q and an upper triangular matrix R
      • Rank-revealing QR decomposition uses column pivoting to delay processing of zeroes
    16. Rank-revealing QR decomposition
      • From the RRQR factorization, we can construct a projection of A onto the nonzero subspace
      • Only the rows of Q spanning span( P ) contribute, so can omit the other rows:
    17. The projected equations
      • We can then rewrite the equations as
      • Since this full-rank, symmetric and real, we can solve this with Cholesky decomposition
      • Use DGELSY in LAPACK
    18. Performance issues
      • O( N 6 ) computational complexity!
        • Not practical
        • Why bother? Na ïve HF has only O( N 3 ) complexity!
      • Can we write down equations with N -1 unknowns?
    19. Relating { p ji } and { q i }
      • Write the relation as a matrix T :
      • The inverse relation is given by T -1 :
      • T is (usually) not square, so T -1 is a pseudoinverse, not a regular inverse
    20. The solution
      • It turns out that it can be shown that
      • Therefore,
    21. The equations in terms of { q i }
      • We get N simultaneous equations
      • with 1 constraint on the total charge (enforce either with a Lagrange multiplier or by substitution)
    22. Computer time
    23. III. Interlude How to construct the STO-1G basis set
    24. Constructing a Gaussian basis
      • STO-1G basis set *
      • Maximize overlap integral
      • After some algebra, want to solve
      *A. Szabo, N. S. Ostlund, Modern Quantum Chemistry , Dover, 1982 , Table 3.1, p.157.
    25. The STO-1G basis set Integrals being coded… results soon! 0.1165917484 7 0.1315902101 6 0.1507985107 5 0.1760307725 4 0.2097635701 3 0.2527430925 2 0.2709498089 1  n
    26. IV. Electrostatics of QTPIE-water Image credit: J. Phys. D: Appl. Phys. 40 (2007) 6112–6114
    27. “ Water is a very fundamental substance[3].” E. V. Tsiper, Phys. Rev. Lett. 94 (2005), 013204 [3] Genesis 1:1-2
    28. Cooperative polarization
      • Dipole moment of water increases from 1.854 Debye 1 in gas phase to 2.95±0.20 Debye 2 at r.t.p. liquid phase
      • Polarization enhances dipole moments
      • Water models with implicit or no polarization can’t describe local electrical fluctuations
      1 D. R. Lide, CRC Handbook of Chemistry and Physics , 73rd ed., 1992 . 2 A. V. Gubskaya and P. G. Kusalik, J. Chem. Phys. 117 (2002) 5290-5302. +
    29. Choosing parameters
      • Reproduce ab initio electrostatics
        • Dipole moments, polarizabilities
        • Water monomer only
      20.680 10.125 8.285 4.960 new 13.364 8.741 13.890 4.528 QEq  O  O  H  H eV
    30.  
    31.  
    32. Calculating dipoles and polarizabilities
      • For the point charges, the dipole is
      • And the polarizability is
    33. “Distributed” properties
      • Instead of calculating properties of the whole system directly, calculate them as a sum of molecular properties
      • Define sum centered on molecular centers of mass; e.g. for dipole,
    34. Mean dipole moment per water planar
    35. Mean dipole moment per water twisted
    36. TIP3P/QTPIE doesn’t predict polarizabilities well
      • Identical to TIP3P/QEq
      • No out of plane polarizability
      • In-plane components underestimated
      twisted planar out of plane in plane dipole axis
    37. Out-of-plane polarizability per water planar
    38. Out-of-plane polarizability per water twisted
    39. In-plane polarizability per water planar
    40. In-plane polarizability per water twisted
    41. Dipole-axis polarizability per water planar
    42. Dipole-axis polarizability per water twisted
    43. Lack of translational invariance
      • Polarizabilities are supposed to be translationally invariant, but ours aren’t!
    44. Water   0.000 14.994 1.176 3.369 D 0.000 14.994 1.176 3.369 C Using numerical finite field 0.000 0.326 23.660 1.684 D 0.000 0.326 0.058 1.684 C Using analytic point charges 1.363 1.474 1.419 1.864 D 1.363 1.474 1.419 1.864 C  zz /Å 3  yy /Å 3  xx /Å 3 d/D
    45. Choosing parameters
      • Reproduce ab initio electrostatics
        • Dipole moments, polarizabilities
        • Water monomer and dimer
        • Weak bias toward initial guess (gradually relaxed)
      11.274 4.386 17.841 2.213 new 13.364 8.741 13.890 4.528 QEq  O  O  H  H eV
    46.  
    47.  
    48. Conclusions
      • There is most likely an error in the polarizability formula (missing terms?)
      • Using the method of finite fields solves the translational invariance problem but not the “distribution” problem
    49. Water trimers DF-LMP2/aug-cc-pVTZ 1,716 cm -1 1,623 cm -1 984 cm -1 687 cm -1 dissociation limit

    + Jiahao ChenJiahao Chen, 2 years ago

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    Slides for group meeting in Fall 2007.

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