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MAGICdb:
 Mango Genetic stocks Identification
  and Characterisation database




A.Dineshwaran


      TNAU Genomics - http://www.tnaugenomics.com/mango/
Introduction

• All the available resources on Mango, Mangifera indica
  provides only the general information and agricultural
  practices (Mango Resources Information System , RainForest
  Database ) .
• Providing morphological and fruit quality information of each
  mango varieties to various stake holders of industry is
  essential in the current information era
• With a view to integrate various resources a new venture
  maze using MAGICdb – Mango Genetic stocks Identification
  and Characterisation



        TNAU Genomics Genomics http://www.tnaugenomics.com/mango/
                  TNAU         - http://www.tnaugenomics.com/mango/
Objective

• To provide an user friendly and organized method to store
  and retrieval of the data of various users in the mango
  industry .
• To locate the mango varieties and features on the real
  location using the geolocation locator .




       TNAU Genomics Genomics - http://www.tnaugenomics.com/mango/
                 TNAU       http://www.tnaugenomics.com/mango/
Material and Methods
• Data is organized into database in three layers.
1.First layer        – User Interface
2.Second layer      – Interface
3.Third layer       – Database
• User interface is developed using HTML,CSS and JDK.
• Interface between the first and third layer is PHP (Hypertext
  Pre Processor)
• Database is MySQL database, which is the most widely used
  database.
• Morphological and Fruit quality data are collected from the
  ten major commercial cultivars.


        TNAU Genomics Genomicshttp://www.tnaugenomics.com/mango/
                  TNAU         - http://www.tnaugenomics.com/mango/
Database Schema




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb - Home page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Morphological Search page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Morphological Search page




                            TNAU Genomics -
  TNAU Genomics           http://www.tnaugenomics.com/mango/
                  http://www.tnaugenomics.com/mango/
MAGICdb – Morphological Search page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Morphological
         Search Result page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Fruit Quality Search page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Fruit Quality
           Search Result page




                          TNAU Genomics -
TNAU Genomics           http://www.tnaugenomics.com/mango/
                http://www.tnaugenomics.com/mango/
MAGICdb – Marker Search page




                            TNAU Genomics -
  TNAU Genomics           http://www.tnaugenomics.com/mango/
                  http://www.tnaugenomics.com/mango/
MAGICdb – Marker Search Result page




                               TNAU Genomics -
     TNAU Genomics           http://www.tnaugenomics.com/mango/
                     http://www.tnaugenomics.com/mango/
Already available resources
                        on Mango
• Mango Resources Information System
  (http://www.mangifera.org/index.php)
• RainForest Database (http://rainforest-
  database.com/plants/mango.htm)
• International Mango Industry
  (http://www.allaboutmangoes.com/index.asp)
• NewCROP
  (http://www.hort.purdue.edu/newcrop/default.html)
• National Horticultural Board (http://nhb.gov.in/bulletin-
  fruits.html)


                                  TNAU Genomics -
        TNAU Genomics           http://www.tnaugenomics.com/mango/
                        http://www.tnaugenomics.com/mango/
Conclusion

• MAGICdb is an organized database that provides the
  information about the mango’s morphological, fruit quality
  characters and marker data.
• On the other hand it provides mango processors, students
  and, people of all community with a complete set of data to
  know about the major cultivated commercial ten mango
  cultivars.
• MAGICdb is one of its kinds to provide such information.
• The information about the other varieties will also be added
  in the days to come.


                                  TNAU Genomics -
        TNAU Genomics           http://www.tnaugenomics.com/mango/
                        http://www.tnaugenomics.com/mango/
Reference

•   M.Kumar (2012). Exploring Environmental, Physiological, Biochemical and
    Molecular characterization of off- season flowering phenomena in Mango
    (Mangifera indica L.) Ph.D. Thesis.
•   Mario Latendresse and Peter D. Karp (2010). An advanced web query
    interface for biological databases. Database, Vol. 2010.
•   Brad Bulger, Jay Greenspan and, David Wall (2004). MySQL/PHP
    Applications. Wiley Publications.
•   PHP resource http://www.php.net
•   Mango Resources Information System
    http://www.mangifera.org/index.php




                                    TNAU Genomics -
          TNAU Genomics           http://www.tnaugenomics.com/mango/
                          http://www.tnaugenomics.com/mango/

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MAGICDB : Mango Genetic stocks Identification and Characterisation Data Base

  • 1. MAGICdb: Mango Genetic stocks Identification and Characterisation database A.Dineshwaran TNAU Genomics - http://www.tnaugenomics.com/mango/
  • 2. Introduction • All the available resources on Mango, Mangifera indica provides only the general information and agricultural practices (Mango Resources Information System , RainForest Database ) . • Providing morphological and fruit quality information of each mango varieties to various stake holders of industry is essential in the current information era • With a view to integrate various resources a new venture maze using MAGICdb – Mango Genetic stocks Identification and Characterisation TNAU Genomics Genomics http://www.tnaugenomics.com/mango/ TNAU - http://www.tnaugenomics.com/mango/
  • 3. Objective • To provide an user friendly and organized method to store and retrieval of the data of various users in the mango industry . • To locate the mango varieties and features on the real location using the geolocation locator . TNAU Genomics Genomics - http://www.tnaugenomics.com/mango/ TNAU http://www.tnaugenomics.com/mango/
  • 4. Material and Methods • Data is organized into database in three layers. 1.First layer – User Interface 2.Second layer – Interface 3.Third layer – Database • User interface is developed using HTML,CSS and JDK. • Interface between the first and third layer is PHP (Hypertext Pre Processor) • Database is MySQL database, which is the most widely used database. • Morphological and Fruit quality data are collected from the ten major commercial cultivars. TNAU Genomics Genomicshttp://www.tnaugenomics.com/mango/ TNAU - http://www.tnaugenomics.com/mango/
  • 5. Database Schema TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 6. MAGICdb - Home page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 7. MAGICdb – Morphological Search page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 8. MAGICdb – Morphological Search page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 9. MAGICdb – Morphological Search page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 10. MAGICdb – Morphological Search Result page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 11. MAGICdb – Fruit Quality Search page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 12. MAGICdb – Fruit Quality Search Result page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 13. MAGICdb – Marker Search page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 14. MAGICdb – Marker Search Result page TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 15. Already available resources on Mango • Mango Resources Information System (http://www.mangifera.org/index.php) • RainForest Database (http://rainforest- database.com/plants/mango.htm) • International Mango Industry (http://www.allaboutmangoes.com/index.asp) • NewCROP (http://www.hort.purdue.edu/newcrop/default.html) • National Horticultural Board (http://nhb.gov.in/bulletin- fruits.html) TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 16. Conclusion • MAGICdb is an organized database that provides the information about the mango’s morphological, fruit quality characters and marker data. • On the other hand it provides mango processors, students and, people of all community with a complete set of data to know about the major cultivated commercial ten mango cultivars. • MAGICdb is one of its kinds to provide such information. • The information about the other varieties will also be added in the days to come. TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/
  • 17. Reference • M.Kumar (2012). Exploring Environmental, Physiological, Biochemical and Molecular characterization of off- season flowering phenomena in Mango (Mangifera indica L.) Ph.D. Thesis. • Mario Latendresse and Peter D. Karp (2010). An advanced web query interface for biological databases. Database, Vol. 2010. • Brad Bulger, Jay Greenspan and, David Wall (2004). MySQL/PHP Applications. Wiley Publications. • PHP resource http://www.php.net • Mango Resources Information System http://www.mangifera.org/index.php TNAU Genomics - TNAU Genomics http://www.tnaugenomics.com/mango/ http://www.tnaugenomics.com/mango/