Honorary Academic Editor
Susanna-Assunta Sansone, PhD
(University of Oxford)
Managing Editor
Andrew L Hufton, PhD
Victoria...
•  Introduction!
§  concepts and principles!
§  working with repositories!
•  Data Descriptor !
§  structured experimen...


"
!
!
Helping you publish, discover and reuse research data
NOW LIVE!!
Credit for sharing
your data
Focused on reuse
and...
Export to various formats
(ISA_tab, RDF, etc)
Linking between research papers, Data Descriptors, and data records


Making...
2
4
3
10 4
1
4
3
4
DNA and protein sequence
Functional genomics
Genetic association and genome variation
Metagenomics
Mole...
"
"
"
Experimental metadata or"
structured component"
(in-house curated, machine-
readable formats)"


Data Descriptor: na...


Data Descriptor: narrative!
Sections:!
•  Title"
•  Abstract"
•  Background & Summary"
•  Methods"
•  Technical Validati...
analysis !
method! script!
Data file or !
record in a
database!


Data Descriptor: structure (CC0)!
In-house curation team:"
•  assists users to submit the structured
content via simple templates and an
internal authoring ...
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"
"
"
"
"
"
"
Synthesis"
Analysis"
Conclusions"
"
What did I do to generate the data?"
How was the data processed?"
Wher...
Edgar: Ecology!
Associated Nature Articles
Data in figshare
Integrated figshare data viewer
Citizen Science project
"
"
"
...
Hanke: Neuroscience !
"
"
"
"
"
"
"
"
"
Code in GitHub
New Dataset
Data in OpenfMRI
Source code in GitHub
Big Data
Stefano: Stem Cells!
Associated Nature Article
Data
- figshare
- NCBI GEO
Integrated figshare data viewer
Hao: Environmental!
New Dataset
Data in figshare
Code in figshare
Integrated figshare data
viewer
Cited in Science
Honorary Academic Editor
Susanna-Assunta Sansone, PhD
(University of Oxford)
Managing Editor
Andrew L Hufton, PhD
Victoria...
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NPG Scientific Data; SSP, Boston, May 2014: http://www.sspnet.org/events/annual-meeting/2014-schedule/concurrent-1e-concurrent-1econcurrent-1ethe-continuum-from-publishers-to-data/

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NPG Scientific Data; SSP, Boston, May 2014: http://www.sspnet.org/events/annual-meeting/2014-schedule/concurrent-1e-concurrent-1econcurrent-1ethe-continuum-from-publishers-to-data/

  1. 1. Honorary Academic Editor Susanna-Assunta Sansone, PhD (University of Oxford) Managing Editor Andrew L Hufton, PhD Victoria Newman Editorial Curator Publisher Ruth Wilson Helping you publish, discover and reuse research data Visit nature.com/scientificdata Email scientificdata@nature.com Tweet @ScientificData Supported by:!
  2. 2. •  Introduction! §  concepts and principles! §  working with repositories! •  Data Descriptor ! §  structured experimental meta data! •  Launch content! §  examples !
  3. 3. 
 " ! ! Helping you publish, discover and reuse research data NOW LIVE!! Credit for sharing your data Focused on reuse and reproducibility Peer reviewed, curated Promoting Community Data Repositories Open Access
  4. 4. Export to various formats (ISA_tab, RDF, etc) Linking between research papers, Data Descriptors, and data records 
 Making data discoverable
 !
  5. 5. 2 4 3 10 4 1 4 3 4 DNA and protein sequence Functional genomics Genetic association and genome variation Metagenomics Molecular interactions Organism- or disease-specific Proteomics Taxonomy and species diversity Traces and sequencing reads “Omics” is emphasized among basic life- sciences repositories •  We currently recognize over 50 public data repositories, and provide advice on the best place for authors to archive their data! •  We have integrated systems with both:! ! ! Helping authors find the right place for the data!
  6. 6. " " " Experimental metadata or" structured component" (in-house curated, machine- readable formats)" 
 Data Descriptor: narrative and structure! Article or " narrative component" (PDF and HTML)!
  7. 7. 
 Data Descriptor: narrative! Sections:! •  Title" •  Abstract" •  Background & Summary" •  Methods" •  Technical Validation" •  Data Records" •  Usage Notes " •  Figures & Tables " •  References" •  Data Citations" 
 ! Focus on data reuse" Detailed descriptions of the methods and technical analyses supporting the quality of the measurements.! Does not contain tests of new scientific hypotheses! Joint Declaration of Data Citation Principles by the Data Citation Synthesis Group, incl.: -  CODATA -  Research Data Alliance, -  Force11
  8. 8. analysis ! method! script! Data file or ! record in a database! 
 Data Descriptor: structure (CC0)!
  9. 9. In-house curation team:" •  assists users to submit the structured content via simple templates and an internal authoring tool! •  performs value-added semantic annotation of the experimental metadata! For advanced users/service providers willing to export ISA-Tab for direct submission, we will release a technical specification:! analysis ! method! script! Data file or ! record in a database! 
 Data Descriptor: structure (CC0)!
  10. 10. " " " " " " " " Synthesis" Analysis" Conclusions" " What did I do to generate the data?" How was the data processed?" Where is the data?" Who did what when" Complementary Methods and technical analyses supporting the quality of the measurements. Do not contain tests of new scientific hypotheses 
 Data Descriptor: relation with traditional articles!
  11. 11. Edgar: Ecology! Associated Nature Articles Data in figshare Integrated figshare data viewer Citizen Science project " " " " " " " " "
  12. 12. Hanke: Neuroscience ! " " " " " " " " " Code in GitHub New Dataset Data in OpenfMRI Source code in GitHub Big Data
  13. 13. Stefano: Stem Cells! Associated Nature Article Data - figshare - NCBI GEO Integrated figshare data viewer
  14. 14. Hao: Environmental! New Dataset Data in figshare Code in figshare Integrated figshare data viewer Cited in Science
  15. 15. Honorary Academic Editor Susanna-Assunta Sansone, PhD (University of Oxford) Managing Editor Andrew L Hufton, PhD Victoria Newman Editorial Curator Publisher Ruth Wilson Helping you publish, discover and reuse research data Visit nature.com/scientificdata Email scientificdata@nature.com Tweet @ScientificData Supported by:!

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