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Purpose Analyze the frequencies contained in a sampled signal Used in: Digital Signal Processing Optics Oceanography Acoustics Physics Number Theory
Fourier Transform Named after Jean Baptiste Joseph Fourier an integral transform that re-expresses a function in terms of sinusoidal basis functions transforms linear differential equations with constant coefficients into ordinary algebraic ones turns the complicated convolution operation into simple multiplication
Continuous Fourier Transform decomposes a function into a continuous spectrum of the frequencies that comprise that function Function: Inverse:
Discrete Fourier Transform Also called Finite Fourier Transform The n complex numbers x0, ..., xn-1 (ie. xi=xreal + i*ximag) are transformed into the n complex numbers f0, ..., fn-1 according to the formula: Inverse (IDFT)
DFT cont.Written in matrix form, the DFT is:where
Fast Fourier Transform (FFT) An efficient algorithm to compute the DFT and its inverse Divide and conquer algorithm Reduces time from O(n2) to O(n log n) Seismic Data contains hundreds of thousands of samples and would take months to evaluate the DFT Cooley-Tukey is most popular implementation Developed in 1965 Re-invented work done by Carl F. Gauss in 1805
FFT Definitions sinusoid the curve of y=sin x radix the size of an FFT decomposition. twiddle factors the coefficients used to combine results from a previous stage to form inputs to the next stage. “in place” FFT an FFT that is calculated entirely inside its original sample memory.
FFT Implementation Radix-2 N, the sample size, must be a power of 2 Mixed-radix Can use different powers at different stages Ex. 1000 = 2*2*2*5*5*5 (six stages) or 1000 = 10 * 10 * 10 (three stages)
FFT Implementation (cont.)1. Pad input sequence, of N samples, with ZEROs until the number of samples is the nearest power of two. e.g. 500 samples are padded to 512 (2^9)2. Bit reverse the input sequence. e.g. 3 = 011 goes to 110 = 63. Compute (N / 2) two sample DFTs from the shuffled inputs.4. Compute (N / 4) four sample DFTs from the two sample DFTs.5. Compute (N / 2) eight sample DFTs from the four sample DFTs. ...6. Combine back into one N-sample DFT
Fast Fourier Transform in the West (FFTW) Developed at MIT Free collection of fast C routines for computing the DFT in 1 or more dimensions Includes complex, real, symmetric, and parallel transforms MPI parallel transforms are only available in v. 2.1.5
FFTW cont. Serial/Parallel, Share/Distributed Memory Faster than most “non-free” implementations Portable, automatically adapt to machine
Two Phases of FFTW Hardware dependent algorithm Planner ‘Learn’ the fast way on your machine Produce a data structure --‘plan’ Reusable Executor Compute the transform Apply to all FFTw operation modes 1D/nD, complex/real, serial/parallel
MPI FFTW Routines fftwnd_mpi_plan fftwnd_create_plan(mpi_comm comm, int rank, const *int n, fftw_direction dir, int flags); void fftwnd_mpi_local_size(fftwnd_mpi_plan p, int *local_first, int *local_first_start, int *local_second_after_transpose, int *local_second_start_after_transpose, int *total_local_size); local_data = (fftw_complex*) malloc(sizeof(fftw_complex) * total_local_size); work = (fftw_complex*) malloc(sizeof(fftw_complex) * total_local_size); void fftwnd_mpi(fftwnd_mpi_plan p, int n_fields, fftw_complex *local_data, fftw_complex *work, fftw_mpi_output_order output_order); void fftw_mpi_destroy_plan(fftwnd_mpi_plan p
Examples View C source code fftw_mpi.c fftw_mpi_test.c To compile: cc -o ffmpi fftw_mpi_test.c –lmpi -lfftw_mpi -lfftw –lm Matlab Example