Web Servicing the Biological Office

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Presentation held at ECCB 05, Barcelona, about ProThesaurus and ProTag, a Web Service based Thesaurus for protein names and identifiers and a Microsoft Office Smart Tag and Addin solution

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  • Hello and welcome to my presentation about Web Servicing the Biological Office. My name is Martin Szugat. I‘m working for the Bioinformatics group of the Ludwig-Maximilians-University, Munich. Together with my colleagues we‘ve implemented an Office Add-In called ProTag and two Web Services called ProThesaurus and LiMB. The ProThesaurus web service is part of the HOBIT project which is funded by the Helmholtz society.
  • Web Servicing the Biological Office

    1. 1. Web Servicing the Biological Office ProTag, ProThesaurus and LiMB Martin Szugat ( [email_address] ) Bioinformatics group of the Ludwig-Maximilians-Universität München LFE Practical Computer Science and Bioinformatics With contributions from Daniel Güttler, Florian Sohler, Katrin Fundel, Ralf Zimmer Part of the HOBIT project Funded by Helmholtz-Gemeinschaft http://hobit.sourceforge.net/
    2. 2. Motivation <ul><li>Task switching: Office  Browser </li></ul><ul><li>Copy & Paste: Name  Identifier </li></ul>Protein name Information Database identifier
    3. 3. Motivation <ul><li>Task switching: Office  Browser </li></ul><ul><li>Copy & Paste: Name  Identifier </li></ul><ul><li>Seamless Integration of the Web </li></ul><ul><li>Context information at one click </li></ul>Protein name Information Database identifier
    4. 4. Concept Markup Database identifier Free text
    5. 5. Concept Database identifier Annotation Other identifiers Synonyms Web pages Web Services …
    6. 6. Application: Smart Tags
    7. 7. Implementation Download: http://services.bio.ifi.lmu.de/prothesaurus/
    8. 8. Application: Office-Add-In
    9. 9. Application: Standalone Application
    10. 10. Application: Excel formulas and VBA Macros
    11. 11. Extension: Write your own Actions or Services Add Web Service methods as custom Actions
    12. 12. Extension: Write your own Actions or Services Integrate additional databases
    13. 13. Extension: Write your own Actions or Services User commited protein names and identifiers
    14. 14. Thanks for your attention! Open Questions? Coming soon: ProTag becomes open source: http://sourceforge.net/projects/protag

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