Presentation at the VIVO 2011 conference

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  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • Beijing meeting, what I saw in poster sessions
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • Ifresources are marked up withsemanticallydefined and machinereadableconcepts, they can belinked and mashed up preciselyaswehaveseen in the examplefrom the BBC.In thisexamplewe start withan AGRIS record on Hazardouswaste, whichisindexedwith AGROVOC. Alreadynowwe can easily link to material indexedwithEurovoc, hereanexamplefromEuroLex. If the UNBIS thesaurus wouldberestructuredto a conceptscheme and publishedas LOD, related UN documentscouldbeattachedautomaticallyby the machine.
  • Ifresources are marked up withsemanticallydefined and machinereadableconcepts, they can belinked and mashed up preciselyaswehaveseen in the examplefrom the BBC.In thisexamplewe start withan AGRIS record on Hazardouswaste, whichisindexedwith AGROVOC. Alreadynowwe can easily link to material indexedwithEurovoc, hereanexamplefromEuroLex. If the UNBIS thesaurus wouldberestructuredto a conceptscheme and publishedas LOD, related UN documentscouldbeattachedautomaticallyby the machine.
  • Ifresources are marked up withsemanticallydefined and machinereadableconcepts, they can belinked and mashed up preciselyaswehaveseen in the examplefrom the BBC.In thisexamplewe start withan AGRIS record on Hazardouswaste, whichisindexedwith AGROVOC. Alreadynowwe can easily link to material indexedwithEurovoc, hereanexamplefromEuroLex. If the UNBIS thesaurus wouldberestructuredto a conceptscheme and publishedas LOD, related UN documentscouldbeattachedautomaticallyby the machine.
  • Ifresources are marked up withsemanticallydefined and machinereadableconcepts, they can belinked and mashed up preciselyaswehaveseen in the examplefrom the BBC.In thisexamplewe start withan AGRIS record on Hazardouswaste, whichisindexedwith AGROVOC. Alreadynowwe can easily link to material indexedwithEurovoc, hereanexamplefromEuroLex. If the UNBIS thesaurus wouldberestructuredto a conceptscheme and publishedas LOD, related UN documentscouldbeattachedautomaticallyby the machine.
  • How does this work: A resource is connected with each concept URI in the web. The concepts between three vocabularies are having same literal which is connected with owl:sameAS/exactMatch relationship. As we are speakingaboutthesauri and notontologieswekept the relation tobechosenpurposelyvague. The conceptscouldbematchedwithowl:sameAS or the termscouldbematcheswith SKOS:exactMatch. A lotofdiscussion on thisisongoing
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • - All links are checked by a domain expert.
  • Thisis the AGROVOC SKOS modelthathasbeendeveloped and decided in April 2010 under activecollaborationfrom Tom Baker, whowasmemberof the W3C SKOS workinggroup.
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • My team in collaborationwith the IndianInstituteofTechnology in Kanpur isdeveloping a similar service foroursubject area.
  • Open Calais isverygood in thoseareas, in whichtheyhavetheirownelaboratedconceptschemeagainstwhich the texts are analyzed: “Places”, “Persons”, “Business Processes” , “IndustryTerms”, butitisweak in the specifictopicanalysis, whattheycall “social tags”
  • AgroTaggerstilllacksmanyof the sophisticated featuresof “Open Calais” ,butismuch, muchbetter in the subjectanalysisof the text
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • the chart on the homepage representing the distribution of services across "service types" (http://ring.ciard.net) (implemented with support from John Fereira); the geographic map on the homepage representing the geographic distribution of services;
  • a first attempt to provide some aggregated data on the number of contents / resources potentially reachable through the services registered in the RING: http://ring.ciard.net/totals
  • The mainintegrationworksthroughcommonsemanticsCore ofagINFRAtechnologyisaLODstoreofsharedencodedknowledgeorganizationsystemsan automaticmarkupto link structuredandunstructureddatasourcesthroughthissharedKnowledgeOrganizationsystemsSharing withinthe R.I.N.G.Partner registertheirservices, notechnicallimitationLOD – Wrapper for all participatingInstitutionsFor all registered services a „triplificationwrapper“ will besetupThe triplifierworkswith „agConceptsandagIdentities“ tocreatelinkeddataSteadilygrowing LOD ecosystemThe agINFRA LOD ecosystemoffers Webservices forthewww
  • Presentation at the VIVO 2011 conference

    1. 1. CIARD - creating a global framework forinformation sharing in agricultural researchand innovation – Role of VIVO Talk at the VIVO 2011 conference Dr. Johannes Keizer Office of Knowledge Exchange, Research and Extension Food and Agriculture Organization of the UN Presentations by Johannes Keizer is licensed under a Creative Commons Attribution- NonCommercial-ShareAlike 3.0 Unported License.
    2. 2. “... FAO’s principle task is to work to ensure that the world’s knowledge of food and agriculture is available to those who need it when they need it and in a form which they can access and use ...”
    3. 3. There will be generated morescientific data in the next 5 yearsthan in the history of humankind http://aims.fao.org johannes keizer
    4. 4. Contribution and Participation in ScienceTerritory size shows proportion of scientific papers published in 2001 byauthors living there.Copyright SASI Group (University of Sheffield) and Mark Newman (University of Michigan) http://aims.fao.org johannes keizer
    5. 5. http://aims.fao.org johannes keizer
    6. 6. Global Trends in Publishing http://aims.fao.org johannes keizer
    7. 7. http://aims.fao.org johannes keizer
    8. 8. The Internet! http://aims.fao.org johannes keizer
    9. 9. Aggregation States of Knowledge http://aims.fao.org johannes keizer
    10. 10. Data and Information in Agricultural Research andExtension http://aims.fao.org johannes keizer
    11. 11. Distributed Repositories• stats• gene banks• gis data• blogs,• journals• open archives• raw data• technologies• learning objects• ……….. http://aims.fao.org johannes keizer
    12. 12. Task 1: making services ? ? ? http://aims.fao.org johannes keizer
    13. 13. Task 2: getting knowledge? ? ? http://aims.fao.org johannes keizer
    14. 14. Task 3: working together ? ? ? How can I get in real time all the specimen data on useful insects from all people making research on this on my desktop? How can I share in real time my data with other colleagues working on that. http://aims.fao.org johannes keizer
    15. 15. http://www.ciard.net http://aims.fao.org johannes keizer
    16. 16. http://aims.fao.org johannes keizer
    17. 17. The Project: agINFRA Enforce Webpublishing of Data Produce linked open data from all datasets Use common reference vocabularies to interlink data sets Don’t wait ! Wrap the Legacy http://aims.fao.org johannes keizer
    18. 18. The Infrastructure elements VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    19. 19. Lod Generator: process http://aims.fao.org johannes keizer
    20. 20. Data Services: process http://aims.fao.org johannes keizer
    21. 21. Under Construction!!!!!!! VocBench VocBench RING Tools vocabulary server Linked Open Data LOD AGROVOCconcepts and entities routemap to information enabled software AgroTagger triples nodes and gateways Triplifying AGRIS Linking Data! Data Services Cloud LOD Generator DrupalRDF storage for front ends for triple stores Webservices + APIs triplifier, to triple stores concept and entity triples The CIARD R.I.N.G identifier “AgriVIVO http://aims.fao.org johannes keizer
    22. 22. So… Where does VIVO fit in? http://aims.fao.org johannes keizer
    23. 23. Background Many Agriculture Information communities, how can we bring together an international network of researchers in this domain A precedent for a community open source based solution http://aims.fao.org johannes keizer
    24. 24. Many Agriculture Communities• E-Agriculture site has 7111 members from 150 countries• CIARD site: 6038 seeded from E-Agriculture site• AIMS site has 280 users• SIDALC has 150+ institutions in 22 LAC countries• IAALD has 400+ members in 80 countries• None of these user communities “talk” to each other (though there is a lot of overlap http://aims.fao.org johannes keizer
    25. 25. Precedent for Open Source Applications AgriDrupal – A content management system based on Drupal with Agriculture Information Systems customizations AgriOceanDSpace – An institutional repository platform, customized for the Agriculture domain http://aims.fao.org johannes keizer
    26. 26. How about “AgriVivo”? An open source semantic web application, customized for managing people (and their activities) that work in the Agriculture domain. Enabling an International Network of Agriculture researchers… http://aims.fao.org johannes keizer
    27. 27. AgriVivo Agri VIVO Triple Store AGRIS E-AGRICULTUREAIMS SIDALC IAALD http://aims.fao.org johannes keizer
    28. 28. AgriVivo: Areas of Work Multi Language Support Integration of Agricultural Ontolologies Development of Harvesters for ingest of Agricultural documents (AGRIS) Community Search of AgriVivo Sites http://aims.fao.org johannes keizer
    29. 29. Linking Data VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    30. 30. Serendipity linking http://aims.fao.org johannes keizer
    31. 31. Semantic Linking http://aims.fao.org/aos/agrovoc/c_7825 http://aims.fao.org johannes keizer
    32. 32. Semantic Linking http://aims.fao.org/aos/agrovoc/c_7825 http://eurovoc.europa.eu/218754 http://aims.fao.org johannes keizer
    33. 33. http://aims.fao.org/aos/agrovoc/c_7825 http://eurovoc.europa.eu/218754http://aims.fao.org johannes keizer
    34. 34. http://aims.fao.org/aos/agrovoc/c_7825http://agclass.nal.usda.gov/nalt/2011.xml#1780 http://eurovoc.europa.eu/218754 http://aims.fao.org johannes keizer
    35. 35. Linking data through common URIs NALT http://agclass.nal.usda.g http://www.agnic. AGROVOC ov/nalt/2011.xml#1780 org/search/CAT8 http://aims.fao.org/aos/a 5822953 grovoc/c_7825 Eurovoc TOXIC UNBIS http://eurovoc.euro pa.eu/218754 SUBSTANCES http://agris.fao.org/agris- search/search/display.do?f=1996/TR /TR96001.xml;TR9600026 http://unbisnet.un.org:8080/ipac20/ ipac.jsp?session=128F308557F34. http://eur- 283092&profile=bib&uri=full=3100 lex.europa.eu/LexUriServ/LexUr 001~!685149~!1&ri=1&aspect=sub iServ.do?uri=OJ:L:2010:202:00 tab124&menu=search&source=~!h 11:0015:EN:PDF orizonhttp://aims.fao.org/aos/agrovoc/c_12332 owl:sameAs http://eurovoc.europa.eu/219871 skos: exact match UNBIS: Toxic Substances http://aims.fao.org johannes keizer
    36. 36. http://lprapp14:8090/openagris/search.do?recordID=JP2010001379 http://aims.fao.org johannes keizer
    37. 37. Open AGRIS threads http://aims.fao.org johannes keizer
    38. 38. The AIMS Community http://aims.fao.org johannes keizer
    39. 39. Thank You! Credits: John Ferreira, Imma Subirats, Yves Jaques, Valeria Pesce, Fabrizio Celli, Ahsan Morshed, Catarina Caracciolo, Dickson Lukose, Gudrun Johannsen, Stefano Anibaldi, Armando Stellato, Tom Baker and many others
    40. 40. Annexes
    41. 41. The VocBench VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    42. 42. The VocBench http://aims.fao.org johannes keizer
    43. 43. VocBench Features Domain independent Structure independent (i.e. thesauri, Glossaries, etc) Supports RDF (SKOS, SKOS-XL), OWL Supports collaborative editing Supports editorial workflow, with user roles Simple and advanced search Supports data export: SKOS, Relational format (MySQL) http://aims.fao.org johannes keizer
    44. 44. http://aims.fao.org johannes keizer
    45. 45. The AGROVOC concept scheme AGROVOC Concept Other schemeskos:inScheme Scheme in FAO skos:topConceptOf Another scheme in FAO 6211 Further schemes skos:broader skos:inScheme in FAO 8171 skos:broader SKOS 1474 SKOS Label Concept skos:broader 12332 rdf:type skosxl:prefLabel :bar skos:literalForm “maize” skosxl:altLabel has_synonym :foo rdf:type has_translation maïs (fr) has_synonym :foo skos:literalForm “corn” has_synonym :bar http://aims.fao.org johannes keizer
    46. 46. http://aims.fao.org johannes keizer
    47. 47. http://aims.fao.org johannes keizer
    48. 48. LOD Generator/Agrotagger VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    49. 49. AgroTagger• Does Concept identification in unstructured texts• Uses Agrovoc as a controlled vocabulary• Prototype under testing with excellent results (entire repository of ICARDA indexed)• Will produce in future Structured RDF files that can be used to link data like “open Calais” http://aims.fao.org johannes keizer
    50. 50. http://aims.fao.org johannes keizer
    51. 51. http://aims.fao.org johannes keizer
    52. 52. AGRIS Journal disambiguation 2.644.818 AGRIS records 2.171.113 records are journal records (82.09%) 1.788.083 journal records have been covered by the disambiguation process (82.35%) 14.658 journals have been correctly disambiguated ~20.000 strings must be examined yet: they refer to journal’s titles Triples have been generated: http://aims.fao.org johannes keizer
    53. 53. Triplifying AGRIS (small example)<?xml version="1.0" encoding="utf-8"?><rdf:RDF xmlns:ags="http://purl.org/agmes/1.1/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:bibo="http://purl.org/ontology/bibo/"xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dct="http://purl.org/dc/terms/"><bibo:Journal rdf:about="http://aims.fao.org/aos/journal/c_b6e4ca85"> <bibo:ISSN>0101-9066</bibo:ISSN> <bibo:ISSN>0101-9066</bibo:ISSN> <dct:title><![CDATA[Circular técnica]]></dct:title> <dct:alternative><![CDATA[Circular técnica (Centro Nacional de Pesquisa de Seringueira e Dendê)]]></dct:alternative> <dct:alternative><![CDATA[Circular Tecnica - Centro Nacional de Pesquisa da Seringueira e Dende]]></dct:alternative> <dct:alternative><![CDATA[Circular técnica - CNPSD]]></dct:alternative> <dct:alternative><![CDATA[Circ. téc.]]></dct:alternative> <ags:publisherPlace rdf:resource="http://aims.fao.org/aos/geopolitical.owl#Brazil"/> <dct:publisher><![CDATA[Empresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Seringueira eDendê]]></dct:publisher> <dct:language>por</dct:language> <dct:date>1980</dct:date> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_10795"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_4650"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_32372"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_332"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_3589"/> <dct:subject rdf:resource="http://aims.fao.org/aos/agrovoc/c_5556"/></bibo:Journal> http://aims.fao.org johannes keizer
    54. 54. The CIARD RING VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    55. 55. The CIARD RING Roadmap to information nodes and gateways Community switchboard to find data sources Not only registry, but dynamic instrument for data linking http://aims.fao.org johannes keizer
    56. 56. RING - Charts and numbers http://ring.ciard.net http://aims.fao.org johannes keizer
    57. 57. RING – Numbers http://ring.ciard.net/totalsNumber ofdocumentspotentially reachablethrough the servicesregistered in theRING.Types of serviceconsidered:documentrepositories andbibliographicdatabases. http://aims.fao.org johannes keizer
    58. 58. The Infrastructure elements VocBench RING Tools vocabulary server LODconcepts and entities routemap to information enabled software triples nodes and gateways Cloud Data Services LOD Generator storage for RDF Webservices + APIs triplifier, to triple stores concept and entity triples identifier http://aims.fao.org johannes keizer
    59. 59. http://aims.fao.org http://aims.fao.org johannes keizer
    60. 60. Agricultural Information Management Standards Tools Standards http://www.ciard.net http://ring.ciard.net http://aims.fao.orgAdvice http://agris.fao.org Services http://aims.fao.org johannes keizer

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