A Report on Connotea

Ian Mulvany, Connotea Product Development Manager,
              Nature Publishing Group
Thank you for you
   Attention
Nature Web Publishing
       group
Nature Web Publishing
       group




                 OTMI
Second Life Nature
History behind
            Connotea

               Deliciously scientific




Timo Hannay, Ben Lund, Martin Flack (Neo Rea...
Social Bookmarking
• del.icio.us founded by Joshua Schachter in 2003,
    acquired by Yahoo in Dec, 2005
•   Key features ...
Examples of del.icio.us url’s
http://www.del.icio.us/popular/Elsevier
http://www.del.icio.us/popular/
http://www.del.icio.us/tag/conference
http://www.del.icio.us/tag/conference
http://www.del.icio.us/tag/conference   Title
http://www.del.icio.us/tag/conference   Title
http://www.del.icio.us/tag/conference   Title
                                           Time
http://www.del.icio.us/tag/conference   Title
                                           Time
http://www.del.icio.us/tag/conference   Title
                                           Time


                          ...
http://www.del.icio.us/tag/conference   Title
                                           Time


                          ...
http://www.del.icio.us/tag/conference   Title
                                           Time


                          ...
http://www.del.icio.us/tag/conference   Title
                                           Time


                          ...
http://www.del.icio.us/tag/conference   Title
                                           Time


                          ...
Academic Bookmarking
 Like del.icio.us but with::
                  Citation data
              Private groups/posts
     ...
Title
Title
Title

Date
Title

Date
Title
Author   Date
Title
Author   Date
Title
      Author   Date




PMID/DOI
perl
mod_perl
Template Toolkit
MySQL
Open Source, GPL2.5 v 1.8.1
web1.75 application
Amazon.pm          DOI.pm         LivingReviews.pm
PLoS.pm            RIS.pm         SpamDNSBL.pm
autodiscovery.pm
BibTeX....
http://www.connotea.org/user/IanMulvany

http://www.connotea.org/users/tag/scifoo


http://www.connotea.org/user/IanMulvan...
http://www.connotea.org/data/user/IanMulvany

  http://www.connotea.org/data/users/tag/scifoo


  http://www.connotea.org/...
http://www.connotea.org/rss/user/IanMulvany

  http://www.connotea.org/rss/users/tag/scifoo


http://www.connotea.org/rss/...
- User
- Date
- Bookmarks        - DOI/PMID
- URI              - Citation Data
-Tag
- Edit
- Free Text Search
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



       ...
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



       ...
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



       ...
“After you make an API, the first thing people want to do is
        write a wrapper in their favorite language”



       ...
RDF         HTML

      RSS
images via flickr: Barry Hennessy, Hettie McFarlane, wallyg
“What I keep hearing is, how can we impact factorize open science. 
Well, the answer is, you can't.  Let's stop trying to ...
Citation Analysis?
People have personal search algorithms, some
              good some bad

 Social bookmarking sites are often write only

...
Collaboration
Serendipidous discovery
         Storage
    Manage (tagging)
   Recommendations
      (algorithmic)
Don’t w...
3rd Party Tools
http://mekentosj.com/
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
http://apps.similette.com/multiguise/

http://www.itfutures.ed.ac.uk/robert_muetzelfeldt_synopsis.htm
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/con...
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/con...
http://www.connotea.org/wiki/User:MrED
http://www.connotea.org/wiki/EntityDescriber

http://i9606.blogspot.com/2007/08/con...
http://www.connotea.org/
            blog


http://www.connotea.org/wiki/
        ConnoteaTools
Stats
Total number of verified email accounts




Number of people adding bookmarks
Total number of tags




Total number of unique tags
11032
Current library usage
OpenId               Better Tagging
OpenAuth             Interface Interface
OpenSocial           More parsers
API Extensi...
Graph Analysis?




                  Text
                   Text
                    Text
Where’s my
          Bibliography?
COINS extension?
ATOM feed?
SSE?
OAI-ORE CIO
or Something entirely new with a new
acron...
The End
<?xml version=quot;1.0quot;?>
<rdf:RDF
 xmlns:rdf=quot;http://www.w3.org/1999/02/22-rdf-syntax-ns#quot;
 xmlns:rdfs=quot;h...
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
Digital Library Federation, Fall 07, Connotea Presentation
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Digital Library Federation, Fall 07, Connotea Presentation

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These are the slides for my talk the the 2007 Fall meeting of the DLF in Philadelphia.

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Digital Library Federation, Fall 07, Connotea Presentation

  1. 1. A Report on Connotea Ian Mulvany, Connotea Product Development Manager, Nature Publishing Group
  2. 2. Thank you for you Attention
  3. 3. Nature Web Publishing group
  4. 4. Nature Web Publishing group OTMI
  5. 5. Second Life Nature
  6. 6. History behind Connotea Deliciously scientific Timo Hannay, Ben Lund, Martin Flack (Neo Reality)
  7. 7. Social Bookmarking • del.icio.us founded by Joshua Schachter in 2003, acquired by Yahoo in Dec, 2005 • Key features of this service: • save bookmarks online • add tags • simple url structure to retrieve data via tags • tags provide folksonomy over bookmarks • many users allow searching links by popularity
  8. 8. Examples of del.icio.us url’s http://www.del.icio.us/popular/Elsevier
  9. 9. http://www.del.icio.us/popular/
  10. 10. http://www.del.icio.us/tag/conference
  11. 11. http://www.del.icio.us/tag/conference
  12. 12. http://www.del.icio.us/tag/conference Title
  13. 13. http://www.del.icio.us/tag/conference Title
  14. 14. http://www.del.icio.us/tag/conference Title Time
  15. 15. http://www.del.icio.us/tag/conference Title Time
  16. 16. http://www.del.icio.us/tag/conference Title Time Popularity
  17. 17. http://www.del.icio.us/tag/conference Title Time Popularity
  18. 18. http://www.del.icio.us/tag/conference Title Time Popularity Poster
  19. 19. http://www.del.icio.us/tag/conference Title Time Popularity Poster
  20. 20. http://www.del.icio.us/tag/conference Title Time Popularity Poster Tags
  21. 21. Academic Bookmarking Like del.icio.us but with:: Citation data Private groups/posts Import/Export for article writing
  22. 22. Title
  23. 23. Title
  24. 24. Title Date
  25. 25. Title Date
  26. 26. Title Author Date
  27. 27. Title Author Date
  28. 28. Title Author Date PMID/DOI
  29. 29. perl mod_perl Template Toolkit MySQL Open Source, GPL2.5 v 1.8.1 web1.75 application
  30. 30. Amazon.pm DOI.pm LivingReviews.pm PLoS.pm RIS.pm SpamDNSBL.pm autodiscovery.pm BibTeX.pm Dlib.pm NASA.pm PMC.pm Scitation.pm Springer.pm blog.pm Blackwell.pm Highwire.pm NPG.pm PNAS.pm Self.pm Wiley.pm ePrints.pm BmcPdf.pm Hubmed.pm OUP.pm Pubmed.pm Simple.pm arXiv.pm
  31. 31. http://www.connotea.org/user/IanMulvany http://www.connotea.org/users/tag/scifoo http://www.connotea.org/user/IanMulvany/tag/scifoo http://www.connotea.org/user/IanMulvany/tag/science http://www.connotea.org/user/IanMulvany/tag/ science2.0+citation
  32. 32. http://www.connotea.org/data/user/IanMulvany http://www.connotea.org/data/users/tag/scifoo http://www.connotea.org/data/user/IanMulvany/tag/ scifoo http://www.connotea.org/data/user/IanMulvany/tag/ science http://www.connotea.org/data/user/IanMulvany/tag/ science2.0+citation
  33. 33. http://www.connotea.org/rss/user/IanMulvany http://www.connotea.org/rss/users/tag/scifoo http://www.connotea.org/rss/user/IanMulvany/tag/scifoo http://www.connotea.org/rss/user/IanMulvany/tag/ science http://www.connotea.org/rss/user/IanMulvany/tag/ science2.0+citation
  34. 34. - User - Date - Bookmarks - DOI/PMID - URI - Citation Data -Tag - Edit - Free Text Search
  35. 35. “After you make an API, the first thing people want to do is write a wrapper in their favorite language”
  36. 36. “After you make an API, the first thing people want to do is write a wrapper in their favorite language” Java
  37. 37. “After you make an API, the first thing people want to do is write a wrapper in their favorite language” Java Python
  38. 38. “After you make an API, the first thing people want to do is write a wrapper in their favorite language” Java Python Perl
  39. 39. “After you make an API, the first thing people want to do is write a wrapper in their favorite language” Java Python Ruby Perl
  40. 40. RDF HTML RSS
  41. 41. images via flickr: Barry Hennessy, Hettie McFarlane, wallyg
  42. 42. “What I keep hearing is, how can we impact factorize open science.  Well, the answer is, you can't.  Let's stop trying to find some magic algorithm whereby a machine tells us what quality science is.  What's completely mad to me about this is that we already have processes to assess science quality.  Every time you review a new student, every time you look at a grant proposal, heck, even on the infamous tenure committees and research assessments, a group of humans looks at a portfolio of existing or proposed work, and decides whether it is good enough. So if I may modestly propose, let's continue to do that, and no one other than journal publishers should ever look at impact factor numbers again.  Arise, qualitative assessment, begone quantitative nonsense.” - Richard Akerman
  43. 43. Citation Analysis?
  44. 44. People have personal search algorithms, some good some bad Social bookmarking sites are often write only By making collections public and tagged you provide a resource For example I read what my boss is tagging This is kind of an orthogonal use case for these kinds of services, even before we add in more complex algorithms
  45. 45. Collaboration Serendipidous discovery Storage Manage (tagging) Recommendations (algorithmic) Don’t want to give a false positive
  46. 46. 3rd Party Tools
  47. 47. http://mekentosj.com/
  48. 48. http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
  49. 49. http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
  50. 50. http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
  51. 51. http://baoilleach.blogspot.com/2007/06/add-to-connotea-from-journal-pages.html
  52. 52. http://apps.similette.com/multiguise/ http://www.itfutures.ed.ac.uk/robert_muetzelfeldt_synopsis.htm
  53. 53. http://www.connotea.org/wiki/User:MrED http://www.connotea.org/wiki/EntityDescriber http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
  54. 54. http://www.connotea.org/wiki/User:MrED http://www.connotea.org/wiki/EntityDescriber http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
  55. 55. http://www.connotea.org/wiki/User:MrED http://www.connotea.org/wiki/EntityDescriber http://i9606.blogspot.com/2007/08/connotea-semantic-web-ed.html
  56. 56. http://www.connotea.org/ blog http://www.connotea.org/wiki/ ConnoteaTools
  57. 57. Stats
  58. 58. Total number of verified email accounts Number of people adding bookmarks
  59. 59. Total number of tags Total number of unique tags
  60. 60. 11032
  61. 61. Current library usage
  62. 62. OpenId Better Tagging OpenAuth Interface Interface OpenSocial More parsers API Extension Recommender 2.0 Nature Integration Citation Manager
  63. 63. Graph Analysis? Text Text Text
  64. 64. Where’s my Bibliography? COINS extension? ATOM feed? SSE? OAI-ORE CIO or Something entirely new with a new acronym to contend with?
  65. 65. The End
  66. 66. <?xml version=quot;1.0quot;?> <rdf:RDF xmlns:rdf=quot;http://www.w3.org/1999/02/22-rdf-syntax-ns#quot; xmlns:rdfs=quot;http://www.w3.org/2000/01/rdf-schema#quot; xmlns:dc=quot;http://purl.org/dc/elements/1.1/quot; xmlns:dcterms=quot;http://purl.org/dc/terms/quot; xmlns:prism=quot;http://prismstandard.org/namespaces/1.2/basic/quot; xmlns:foaf=quot;http://xmlns.com/foaf/0.1/quot; xmlns=quot;http://www.connotea.org/2005/01/schema#quot;> <Post rdf:about=quot;http://www.connotea.org/user/IanMulvany/uri/ 1f079ccb3687202fdaa517d5245b5588quot;> <title>First SciFoo Lives On Session</title> <dc:subject>secondlife</dc:subject> <dc:subject>scifoo</dc:subject> <userBookmarkID>576893</userBookmarkID> <dc:creator>IanMulvany</dc:creator> <private>0</private> <created>2007-08-21T15:46:38Z</created> <updated>2007-08-21T15:46:38Z</updated> <uri> <dcterms:URI rdf:about=quot;http://usefulchem.blogspot.com/2007/08/first-scifoo-lives-on- session.htmlquot;> <dc:title>Useful Chemistry: First SciFoo Lives On Session</dc:title> <link>http://usefulchem.blogspot.com/2007/08/first-scifoo-lives-on-session.html</link> <hash>1f079ccb3687202fdaa517d5245b5588</hash> <citation> <rdf:Description> <citationID>582573</citationID> <prism:title>First SciFoo Lives On Session</prism:title> <foaf:maker> <foaf:Person> <foaf:name>Jean-Claude Bradley</foaf:name> </foaf:Person> </foaf:maker> <dc:date>2007-08-20T00:00:00Z</dc:date> <journalID>546903</journalID> <prism:publicationName>Useful Chemistry</prism:publicationName> </rdf:Description> </citation> </dcterms:URI> </uri> </Post> </rdf:RDF>hyperlink
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