Integrating tranSMART with
Genedata Analyst™
Jens Hoefkens
April 29, 2014
© 2014 Genedata 2CONFIDENTIAL
Genedata Snapshot
Domain Expertise
Experienced Ph.D. level experts coupled with efficient so...
© 2014 Genedata 3CONFIDENTIAL
Marquee Customers
San Francisco
MunichBasel
Tokyo
19 of Top 20 Pharmas
Boston
5 of Top 6 Agr...
© 2014 Genedata 4CONFIDENTIAL
Genedata Software Portfolio
Genedata Expressionist
for Omics Data Management
Genedata Phylos...
© 2014 Genedata 5CONFIDENTIAL
Genedata Analyst™
Genedata Analyst™ is
• a Software Platform
• for Integrative Analysis
• of...
© 2014 Genedata 6CONFIDENTIAL
Integration of Analyst with tranSMART
Reduce time to import, export, integrate, and analyze ...
© 2014 Genedata 7CONFIDENTIAL
Omics data &
Clinical annotations
• Supports in-depth statistical analysis
• Provides out-of...
© 2014 Genedata 8CONFIDENTIAL
Omics data &
Clinical annotations
• Provides technology-specific preprocessing and QC
• Comp...
© 2014 Genedata 9CONFIDENTIAL
Technical Features
• Fast and scalable data streaming
– Load 20 experiments with 50k values ...
© 2014 Genedata 10CONFIDENTIAL
Summary Genedata Analyst™
• Unified translational system provides teams with an
research co...
analyst@genedata.com | biologics@genedata.com | expressionist@genedata.com | phylosopher@genedata.com
screener@genedata.co...
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Integrating tranSMART with Genedata Analyst™

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Presentation of Jens Hoefkens, Ph.D., Head of Genedata Expressionist Business Unit®, Genedata during BioIT 2014 in Boston.

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Integrating tranSMART with Genedata Analyst™

  1. 1. Integrating tranSMART with Genedata Analyst™ Jens Hoefkens April 29, 2014
  2. 2. © 2014 Genedata 2CONFIDENTIAL Genedata Snapshot Domain Expertise Experienced Ph.D. level experts coupled with efficient software engineering processes Dedicated to the Life Sciences Innovative portfolio of enterprise systems supporting data rich & complex research processes Global Reach 150+ employees | Offices in Europe (Basel, Munich), North America (Boston, San Francisco) & Asia (Tokyo) Marquee Customer Base Pharmaceutical, biotechnology, and other life science organizations Roots Established in 1997 | Privately Owned | Headquartered in Switzerland
  3. 3. © 2014 Genedata 3CONFIDENTIAL Marquee Customers San Francisco MunichBasel Tokyo 19 of Top 20 Pharmas Boston 5 of Top 6 Agrochemicals
  4. 4. © 2014 Genedata 4CONFIDENTIAL Genedata Software Portfolio Genedata Expressionist for Omics Data Management Genedata Phylosopher for Translational Medicine Genedata Biologics for Biopharmaceutical R&D Genedata Selector for Strain Development Genedata Analyst for Integrative Statistical Analysis Genedata Screener for Plate-Based Screening
  5. 5. © 2014 Genedata 5CONFIDENTIAL Genedata Analyst™ Genedata Analyst™ is • a Software Platform • for Integrative Analysis • of Multi-omics Data • in Translational Research
  6. 6. © 2014 Genedata 6CONFIDENTIAL Integration of Analyst with tranSMART Reduce time to import, export, integrate, and analyze data from days to minutes
  7. 7. © 2014 Genedata 7CONFIDENTIAL Omics data & Clinical annotations • Supports in-depth statistical analysis • Provides out-of-the-box integration with public data sources • Allows cross-study comparisons
  8. 8. © 2014 Genedata 8CONFIDENTIAL Omics data & Clinical annotations • Provides technology-specific preprocessing and QC • Comprehensive technology and platform coverage • Integration with study management systems & ontologies • Extendable to new and emerging technologies & platforms
  9. 9. © 2014 Genedata 9CONFIDENTIAL Technical Features • Fast and scalable data streaming – Load 20 experiments with 50k values in 15 seconds – Experiments loaded concurrently within Analyst – Only 5 MB of memory required per stream • Access mirrors study-based tranSMART security • Secure system-to-system communication • Compatible with Oracle and PostgreSQL
  10. 10. © 2014 Genedata 10CONFIDENTIAL Summary Genedata Analyst™ • Unified translational system provides teams with an research collaboration and data analysis platform – Rich statistical toolbox to explore and analyze data – Scalability for interactive analysis of extremely large data sets – Integration with public omics data source – State-of-the-art software architecture for end-to-end traceability – Reduce time to import, export, integrate, and analyze data • Visit us at Booth #232 for a live demo & discussions
  11. 11. analyst@genedata.com | biologics@genedata.com | expressionist@genedata.com | phylosopher@genedata.com screener@genedata.com | selector@genedata.comwww.genedata.com Genedata AG Switzerland Margarethenstrasse 38 4053 Basel Switzerland Genedata GmbH Germany Fürstenrieder Strasse 281 81377 Munich Germany Genedata Inc USA East Coast Office 750 Marrett Road One Cranberry Hill Suite 403 Lexington, MA 02421 West Coast Office 109 Stevenson Street 4th Floor San Francisco, CA 94105 Genedata KK Japan 1-7-11-408 Higashi-Gotanda Shinagawa-Ku Tokyo 141-0022 Japan
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