cBio Cancer Genomics Portal: Getting started

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cBio Cancer Genomics Portal: Getting started

  1. 1. cBio Cancer Genomics Portal Tutorial: Introduction to the cBio Portal Querying across cancer studies Querying against a single cancer study Basic Reports
  2. 2. Querying Across Multiple Cancer Studies Step 1: Select All Cancer Studies
  3. 3. Querying Across Multiple Cancer Studies Step 2: Enter one or more genes
  4. 4. Click to modify your query Cancer Study Summary Click for complete details Click to expand cancer study
  5. 5. Querying A Single Cancer Study Step 1: Select a Cancer Study, e.g. Ovarian Cancer (TCGA)
  6. 6. Querying A Single Cancer Study Step 2: Select one or more genomic profiles. For example: mutations and copy number.
  7. 7. Querying A Single Cancer Study Step 3: Select a Patient Set. Tip: Hover your move over a case set to view a description.
  8. 8. Querying A Single Cancer Study Step 4: Enter one or more genes.
  9. 9. Querying A Single Cancer Study Optional argument to compute mutual exclusivity.
  10. 10. Multiple Reports, one per tabOncoPrint Summary Visualization
  11. 11. Network Analysis and Visualization
  12. 12. Multiple Plotting Options
  13. 13. Survival Analysis
  14. 14. Mutation Details Filter / Sort Options Links to MutationAssessor.org for predicted functional consequences of mutations.
  15. 15. MutationAssessor.org
  16. 16. Data Download
  17. 17. You can alwaysmodify your queryhere…
  18. 18. Questions?Send us an email at:cancergenomics@cbio.mskcc.org

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