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cBio Cancer Genomics Portal: Getting started

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http://www.cbioportal.org 23028
http://cbio.mskcc.org 394
http://localhost 171
http://dvfhg.blogspot.ru 68
http://awabi.cbio.mskcc.org 50
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    cBio Cancer Genomics Portal:  Getting started cBio Cancer Genomics Portal: Getting started Presentation Transcript

    • cBio Cancer Genomics Portal Tutorial: Introduction to the cBio Portal Querying across cancer studies Querying against a single cancer study Basic Reports
    • Querying Across Multiple Cancer Studies Step 1: Select All Cancer Studies
    • Querying Across Multiple Cancer Studies Step 2: Enter one or more genes
    • Click to modify your query Cancer Study Summary Click for complete details Click to expand cancer study
    • Querying A Single Cancer Study Step 1: Select a Cancer Study, e.g. Ovarian Cancer (TCGA)
    • Querying A Single Cancer Study Step 2: Select one or more genomic profiles. For example: mutations and copy number.
    • Querying A Single Cancer Study Step 3: Select a Patient Set. Tip: Hover your move over a case set to view a description.
    • Querying A Single Cancer Study Step 4: Enter one or more genes.
    • Querying A Single Cancer Study Optional argument to compute mutual exclusivity.
    • Multiple Reports, one per tabOncoPrint Summary Visualization
    • Network Analysis and Visualization
    • Multiple Plotting Options
    • Survival Analysis
    • Mutation Details Filter / Sort Options Links to MutationAssessor.org for predicted functional consequences of mutations.
    • MutationAssessor.org
    • Data Download
    • You can alwaysmodify your queryhere…
    • Questions?Send us an email at:cancergenomics@cbio.mskcc.org