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EARTHCUBE FUNDED
PROJECTS: LIGHTNING TALKS
EarthCube Portfolio Workshop
Boulder CO
February 12-14, 2014
Enabling Transformation
in the Social Sciences,
Geosciences, and
Cyberinfrastructure
Support from the National Science Foundation is deeply
appreciated:
NSF-VOSS EAGER 0956472, “Stakeholder Alignment in Socio-
Technical Systems,”
NSF OCI RAPID 1229928, “Stakeholder Alignment for EarthCube,”
NSF GEO-SciSIP-STS-OCI-INSPIRE 1249607, “Enabling
Transformation in the Social Sciences, Geosciences, and
Cyberinfrastructure,”
NSF OCI 12-56163, “Envisioning Success: A Workshop for Next
Generation EarthCube Scholars and Scientists,”
NSF I-CORPS 1313562 “Stakeholder Alignment for Public-Private
Partnerships,”
Stakeholder Alignment Visualization Patent Pending: Serial No.
13/907,291 (2013).
Joel Cutcher-Gershenfeld,
University of Illinois, Urbana-Champaign
Nick Berente, University of Georgia
Burcu Bolukbasi, UIUC
Nosh Contractor, Northwestern University
Leslie DeChurch, Georgia Tech University
Courtney Flint, Utah State University
Gabe Gershenfeld, Cleveland Indians
Michael Haberman, UIUC
John L. King, University of Michigan
Eric Knight, University of Sydney
Spenser Lewis, General Dynamics
Barbara Lawrence, UCLA
Ethan Masella, Brandeis Uniersity
Charles Mcelroy, Case Western
Reserve University
Barbara Mittleman, Nodality, Inc.
Mark Nolan, UIUC
Melanie Radik, Brandeis University
Namchul Shin, Pace University
Susan Winter, University of Maryland
1. What are the overall aims
of your project?
• Enable agile, sustainable institutional arrangements in
support of the EarthCube mission
• Document lessons for similar initiatives in other domains,
advancing organizational and institutional theory
2. How will your project contribute to the overall
success for EarthCube?
• Providing situational awareness on views about sharing
data, software, and models, as well as related matters,
across the geoscience and cyber communities
• Helping to facilitate the chartering/instantiation of EC
assemblies
3. What are the key milestones and
deliverables for your project?
2013 Stakeholder surveys (v1.5) and feedback to 22 EC
end user workshops (n=798 / 1,511)
Scholarly articles on “internal alignment” and
“making data public”
2014 Development and administration of stakeholder
survey (v2.0) for past respondents and professional
associations
Facilitation support for chartering/instantiation of
EC assemblies
Scholarly articles on “Cooperation and competition
in the Geosciences,” “Vies on standards,” and others
2015 Elements of a theory framework for the “science of
scienceinstitutions”
C4P
Cyberinfrastructure for
Paleobiosciences
C4P: Objective
• advance the role of
cyberinfrastructure (CI) in the
study of the geological record
• to unravel the large-scale, long-
term evolution of the Earth-life
system,
• across the whole Earth surface,
• for any time interval,
• at any relevant temporal and spatial
resolution.
This image cannot currently be displayed.
C4P: Challenges
• A typical ‘Long-tail’ community: Much fossil data are ‘dark’
• Many databases & informatics efforts, but little
coordination or interoperability
C4P: Components
• Build new partnerships and collaborations among
geoscientists and technologists
• Survey and catalog existing resources
• Share news of the latest advances in cyberscience and
paleo-geoinformatics
• Facilitate development of common standards and
semantic frameworks
CoreWall
C4P: Themes
• SAMPLES
• improve access and re-use of samples through integration into
digital data infrastructures;
• METHODS
• document provenance of data and derived data products in
compliance with emerging best practices and standards to ensure
re-usability, reproducibility and trust for data providers and data
users;
• SYNTHESIS
• improve utilization of time as a unifying parameter in
paleogeoscience CI and broader EarthCube interoperability
• develop & promote metadata standards and data services to
integrate paleobioscience CI resources.
C4P: Activities
• Cataloging existing cyberinfrastructure resources in the
paleobiosciences
• Sub award to NCDC to generate ISO metadata records, work with
CINERGI
• Workshops:
• Paleobioinformatics (May 21-23, 2014, COL, Washington, DC)
• Geochronology “Overcoming Barriers to Computation and
Visualization with Geologic Time” (Fall 2014, Madison, WI)
• Synthesis (Spring 2015, Lamont)
• Town Halls & Early Career Symposia at GSA, AGU, ESIP
• Travel support for early career scientists
C4P: Activities
C4P: Activities
• Outreach via Social Media
• Twitter: #EarthCubeC4P
• EarthCube Website: http://workspace.earthcube.org/c4p
• YouTube Channel: http://www.youtube.com/cyber4paleo
• Discussion group: cyber4paleo@earthcube.org
C4P: Steering Committee
• Lehnert, Kerstin IEDA, Columbia University
• Anderson, David M. NOAA, National Climatic Data Center
• Fils, Douglas Consortium for Ocean Leadership
• Jenkins, Chris University of Colorado at Boulder
• Lenhardt, Christopher Renaissance Computing Institute
• Noren, Anders University of Minnesota
• Olszewski, Thomas Texas A&M University
• Smith, Dena University of Colorado at Boulder
• Uhen, Mark George Mason University
• Williams, Jack University of Wisconsin-Madison
• Project Management: Leslie Hsu (IEDA, Columbia University)
EC3—Earth-Centered Communication for Cyberinfrastructure:
Challenges of field data collection, management, and
integration
Steering Committee Membership: Richard Allmendinger, Cornell U; Jim Bowring,
College of Charleston; Marjorie Chan, U of Utah; Amy Ellwein, Rocky Mountain Bio
Lab; Yolanda Gil, U of Southern CA; Paul Harnik, Franklin and Marshall College; Eric
Kirby, Penn State U; Ali Kooshesh, Sonoma State U; Matty Mookerjee, Sonoma State
U; Rick Morrison, Comprehend Systems Inc; Terry Pavlis, U of Texas, El Paso; Shanan
Peters, U of Wisc, Madison; Bala Ravikumar, Sonoma State U; Paul Selden, U of
Kansas; Thomas Shipley, Temple U; Frank Spear, Rensselaer Poly. Inst; Basil Tikoff, U
of Wisc, Madison; Douglas Walker, U of Kansas; Mike Williams, U of Mass., Amherst
Initiate relationships and
collaborations between field-based
geoscientists and computer
scientists
Why Concentrate on Field-based
disciplines of the Geosciences?
Common set of challenges with regards to
digitizing our data and making those data
available through community databases.
Fieldwork provides essential information
about the long-term history of the Earth’s
atmosphere, oceans, and tectonic cycles.
There is no better place to have these conversations than in the field
Summer 2014 field trip: Yosemite/Owen’s Valley, Aug 4th-8th
Summer 2015 field trip: TBA
Applications to participate in fieldtrips:
Form available at: http://earthcube.org/page/workshops
Deadline: March 10th
e-mail applications to matty.mookerjee@sonoma.edu
RCN	
  SEN:	
  Building	
  a	
  Sediment	
  
Experimentalists	
  Network	
  
Wonsuck	
  Kim	
  (UT	
  AusAn)	
  
Leslie	
  Hsu	
  (LDEO)	
  
Brandon	
  McElroy	
  (U	
  Wyoming)	
  
Raleigh	
  MarAn	
  (UCLA)	
  
deltas	
  
ripples	
   floods	
  
channels	
  
meanders	
  
mountains	
  
Overall	
  aims	
  of	
  SEN	
  project	
  
•  Build	
  the	
  community	
  and	
  discussion	
  forums:	
  provide	
  
places	
  for	
  sharing	
  ideas	
  and	
  work,	
  acAvely	
  recruiAng	
  
content.	
  
•  Create	
  centralized	
  resources:	
  a	
  place	
  to	
  go	
  to	
  find	
  
informaAon	
  and	
  ask	
  quesAons	
  about	
  data	
  
management	
  and	
  experimental	
  procedures.	
  
•  Disseminate	
  guidelines,	
  standards,	
  best	
  prac@ces:	
  
have	
  the	
  discussion	
  of	
  what	
  metadata	
  and	
  standards	
  
are	
  needed	
  to	
  re-­‐use	
  data	
  and	
  re-­‐create	
  experiments.	
  
EarthCube	
  PorTolio	
  MeeAng,	
  Feb	
  2014,	
  RCN	
  SEN	
  
SEN	
  Contribu@ons	
  to	
  EarthCube	
  
•  “Real”	
  domain	
  scien@sts	
  and	
  data:	
  tractable	
  group	
  
size	
  (order	
  100s)	
  with	
  close	
  Aes	
  to	
  larger	
  Earth	
  surface	
  
group	
  (order	
  1000s),	
  Aght-­‐knit	
  community	
  
•  Early	
  career	
  component:	
  many	
  or	
  most	
  
experimentalists	
  are	
  early	
  career	
  –	
  graduate	
  students	
  
or	
  postdocs,	
  more	
  willing	
  to	
  try	
  new	
  tools	
  
•  Almost	
  a	
  blank	
  slate:	
  A	
  community	
  with	
  fewer	
  
organized	
  legacy	
  databases	
  and	
  tools	
  –	
  acknowledges	
  
the	
  need	
  for	
  help,	
  more	
  likely	
  to	
  use	
  EC	
  resources	
  
	
  
EarthCube	
  PorTolio	
  MeeAng,	
  Feb	
  2014,	
  RCN	
  SEN	
  
SEN	
  milestones	
  and	
  deliverables	
  
	
  hp://workspace.earthcube.org/sen/group-­‐tasks/sen-­‐year-­‐1-­‐tasks	
  
•  SEN-­‐KB:	
  Knowledge	
  base:	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  
Wiki	
  and	
  data	
  catalog	
  for	
  experimental	
  data	
  and	
  
procedures	
  
•  SEN-­‐ED:	
  Educa@on	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  
Discussion	
  and	
  disseminaAon	
  of	
  standards	
  and	
  guidelines.	
  
DocumentaAon	
  of	
  discussion	
  and	
  outcomes.	
  
•  SEN-­‐EC:	
  Experimental	
  collaboratories:	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  	
  
Networked	
  laboratories	
  with	
  broadcasAng	
  abiliAes	
  for	
  
shared	
  experiments	
  
	
  
EarthCube	
  PorTolio	
  MeeAng,	
  Feb	
  2014,	
  RCN	
  SEN	
  
Enterprise Architecture for
Transformative Research and
Collaboration Across the Geosciences
 Paradigm: Emergence, Self-organizing system requires
more direct interaction between agents in the system
 Technology-enabled feedback between users cultivates
an emergent, self-organizing system
Resources Activities
Usage
Log
Recommendations Impact
Analysis
Publication
Discussion
Data use
Data revision
Annotation…
People
Models
Data…
How it fits in an Integrated EarthCube
• Provide specific proposal for system design as
a straw man to promote community
convergence
Milestones
• Draft white paper
– Use cases
– Requirements
– Existing architecture
– Proposed design
• System architects
summit
• Final white paper
Products
• Community discussion of scope, use cases,
integration of existing components
• White paper documenting vision and
conceptual architecture
• Concrete proposal to drive community
discussion and convergence on EarthCube
design
CD: Developing a Data-Oriented
Human-Centric Enterprise
Architecture for EarthCube
Phil Yang and Chen Xu,
NSF Spatiotemporal Innovation Center
George Mason Univ.
Carol Meyer, ESIP
User
Interfaces
Applications
Data
Services
Geoscientists
EarthCube
Administrator
Educators
On-Demand Work-Flow Chaining Layer
Interdisciplinary Data & Business Interoperability Layer
Geological
Geophysical Biological Climatology
DataandInformationProvenance
Geospatial
Portal
Geochemistry Petrology
Sedimentology
… …
Modeling
Capability
Big Data
Analytics
Pre and Post
Processing
Public
Generic CI Services
Data
Discovery
Data
Access
Data
Visualization
Data
Publication
Modeling
Geological
Portal
Modeling
GUI
Rivers
Portal
Citizen Science
Portal
Seismic
Portal
… …
… …
EarthCube Project
Project Portfolio
Relationships
Project
Timelines
Project to
Capability Mapping
Capability
Vision
Capability
Taxonomy
Capability
Phasing
Capability
Dependencies
Capability to
Operational
Capability to
Services
High Level
Operational
Operational
Resource Flow
Operational
Relationships
Operational
Activities
Service
Context
Service
Resource Flow
Service to
System
System
Interface
System
Resource Flow
System to
System
System
Functionality
System back to
Operational
Conceptual
Data Model
Physical Data
Model
Logical Data Model
Technical Standards
EarthCubeEnterpriseArchitectureOverview
Overarchingaspectsofarchitecturethatrelateto
EarthCubeEnterpriseArchitecture
EarthCubeArchitectureDictionary
Articulatethedatarelationshipsandalignment
structuresintheEarthCubeArchitectureContent
TechnicalStandards
ArticulateapplicableOperationalandTechnical
standardsandguidance EarthCube Operational
Articulate EarthCube operational
scenarios, processes, activities and
requirements
EarthCube Services
Articulate the performers, activities,
services, and their exchanges providing for,
or supporting EarthCube functions
EarthCube Systems
Articulate the legacy systems or
independent systems, their composition,
interconnectivity, and context providing for
or supporting EarthCube functions
EarthCubeProject
ExemplifyhowtousetheEarthCubeEA
toGuideProjectDesign
Volume I Volume III Volume II Volume IV
Overall Aims of
the Project
Our Conceptual Design project targets the conceptual design of an
EarthCube enterprise architecture to facilitate data communication
and human collaboration in pursuit of collaborative geosciences.
EarthCube Capability
Articulate the capability requirement,
delivery timing, and deployed capability
Benefits to the
EarthCube
Enterprise
• Supporting strategic planning and alignment of business and EarthCube goals and
objectives
• Maintaining baseline and target architecture information in a system repository
• Ensuring EarthCube projects align with Enterprise Architecture
• Defining a performance management framework for guiding the success of projects
• Identifying technical and process improvement opportunities
• Identifying opportunities for collaboration, reuse, data sharing and consolidation
• Documenting enterprise service capabilities available for use across the EarthCube
• Ensuring alignment with relevant cross-disciplinary and International initiatives
Collection
PresentationProcess
Multi-Party
Collaboration
Data-Owner
Obligation
Public
Partaking
CKN
The Core EarthCube Conceptual Model
Collection: Data / service
Process: Data analytics
Presentation: Results visualization
Data-owner: EarthCube stakeholders
capable of data production
Multi-party: EarthCube participants
Public: Third party outside of
EarthCube enterprise
Milestones and
Deliverables
EarthCube Design Initial Write-up
Volume I Overview and Summary Information
Volume II EarthCube Cyberinfrastructure
Architecture Design: System, Operation, and
Standards
Volume III EarthCube Enterprise Architecture
Dictionary
Volume IV EarthCube EA Use Case – Polar CI
Project
EarthCube Enterprise Architecture
Workshop at ESIP Summer Meeting
• Point of Contact: Carol Meyer, ESIP Executive Director
• Date: July 7, 2014
• Location: Copper Mountain, Colorado
• Content: Domain experts to review and comment on
the design
– Pick one or more volumes to comment
– Discuss comment at ESIP Summer Meeting
– Provide advice on improving the EA
• Support:
– $700/expert for up to 10 experts
• Call for participation will be out soon, please help get the
word out
EarthCube Building Block ODSIP:
Open Data Services Invocation
Protocol
Dave Fulker (OPeNDAP), PI
Mohan Ramamurthy (Unidata), Co-PI
Senior Personnel: Brian Blanton (RENCI), Steve
Businger (U-Hawaii), Peter Cornillon (U-Rhode Island)
Overarching Goal
• We propose building blocks—open specifications,
realized in client/server libraries—for a model and
protocol by which clients invoke a rich set of data-
acquisition services.
– Services will range from statistical summarization and
criteria-driven subsetting to regridding/resampling.
• ODSIP will build on the newest version of OPeNDAP’s
data-access protocol, DAP4, now being tested under a
collaborative, NOAA-funded OPeNDAP-Unidata project,
designed to accommodate extensions of the sort
proposed here.
Building Block Objectives
• An open specification for ODSIP (as a DAP4
extension, suitable for eventual OGC adoption).
– DAP, Data Access Protocol, is the underpinning for
OPeNDAP
• Reference implementations of ODSIP in open-
source libraries callable from multiple languages.
• Demonstrations, in openly accessible clients and
servers, illustrating how ODSIP services may be
invoked to support diverse geoscience scenarios
Representative Use Cases
1. Accelerated Visualization/Analysis of Model
Outputs on Non-Rectangular Meshes
2. Dynamic Downscaling of Climate Predictions
for Regional Utility
3. Feature-Oriented Retrievals of Satellite
Imagery
EarthCube Relevance
• EarthCube will benefit from a conceptually rich and
widely deployed protocol for data-acquisition. To that
end, our BB work will enable development of servers
and clients that implement just such a protocol,
namely, ODSIP.
• While the eventual benefits of our work will be
manifest as numerous ODSIP-compliant servers and
clients, the immediate outcomes will be to support
their creation.
• The ODSIP project will contribute toward addressing
challenges EarthCube faces toward truly transforming
multiscale and multidisciplinary research and
education.
A Rough Time Table
Software Stewardship for Geosciences
Principal Investigators:
Christopher J. Duffy
Department of Civil and Environmental Engineering, Penn State University
Yolanda Gil
Information Sciences Institute, University of Southern California
Department of Computer Science, University of Southern California
James D. Herbsleb
Institute for Software Research, Carnegie Mellon University
Chris A. Mattmann
NASA Jet Propulsion Laboratory
Department of Computer Science, University of Southern California
Scott D. Peckham
Department of Hydrologic Sciences, University of Colorado
Erin Robinson
Foundation for Earth Science
NSF ICER-1343800
geosoft.earthcube.org
The Importance of Geosciences Software
• EarthCube aims to enable scientists solve challenging
problems that span diverse geoscience domains
– This requires not only data sharing but new forms of knowledge
sharing
• The focus of our project is on helping scientists to share
knowledge concerning the software they develop
Problems: (I) Software Cost
– “Scientists and engineers spend more than 60% of
their time just preparing the data for model input
or data-model comparison” (NASA A40)
“Common Motifs in Scientific Workflows: An Empirical Analysis.” Garijo, D.; Alper, P.;
Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. Future Generation Computer Systems, 2013.
Problems: (II) Reproducibility
GeoSoft: Software Stewardship for Geosciences
• An on-line community for sharing knowledge
about geosciences software
• Project involves: geoscientists, social scientists
expert in on-line communities, and computer
scientists expert in knowledge capture, open
source software, and software reuse
Fully coupled multi-process model Edited by CDuffy
11 Feb 14 2:56pm
Push API
(to CSDMS
and others
http://www.isi.edu/ikcap/geosoft/ontology/csdms.owl
GeoSoft: Software Stewardship for Geosciences
• Ongoing work:
– Intelligent assistance to describe new software: how to
use it appropriately, what kinds of data, how it relates
to other software
– Sophisticated search capabilities to find software for
their needs
– Interactive advice on open source software, forming
successful developer communities, and other software
sharing topics
Earth System Bridge
An NSF funded EarthCube Building Block
Scott Peckham, CU-Boulder, PI
Co-PIs
Jennifer Arrigo (CUAHSI), Cecelia Deluca (NOAA, CIRES),
David Gochis (NCAR), Rocky Dunlap (GA Tech), Anna
Kelbert & Gary Egbert (OSU), Eunseo Choi (Memphis)
What is the Big Picture?
Geoscientists are problem solvers. Problem solving is sometimes
about creating new resources (e.g. models, data sets or web
services), but very often requires connecting a set of existing
resources. The problem is that these resources are very
hetereogeneous and are often designed for a specific environment
(e.g. PC or HPC) . This makes them hard to connect.
We seek interoperability. We have learned that the key to
interoperability is to have standardized "metadata" descriptions of
the resources that need to be connected to solve a problem. Given
sufficient metadata, frameworks can be designed to automatically
query and then reconcile differences between the resources to be
connected.
The Science Goal: Improving
Environmental Modeling Predictions
∗ Mission-Driven agencies
providing predictions
∗ Efficient data and
computational enterprise
∗ Information to protect life and
property ∗ Academic Enterprise
∗ Geoscientists advancing the
science
∗ Computer scientists
advancing the technology
∗ Scientific inquiry and
hypothesis testing
“Bridging the Gap” to Enable
Research-to-Operations
Operations-to-Research
Building the Bridge
∗ Framework Definition Language
(FDL)
∗ Metadata specification
∗ Application Architecture
∗ Protocols for interaction
∗ Mechanics and Implementation
∗ Build a series of bridges
∗ Semantic
∗ Frameworks
∗ new services to improve the
integration of inter-agency, four-
dimensional databases with
more heterogeneous academic
databases
Initial Groups for Demonstration
∗ ESMF- Earth System
Modeling Framework
∗ NUOPC - National Unified
Operational Prediction
Capability – Layer to
enhance interoperability
∗ CSDMS - Community Surface
Dynamics Modeling System
∗ Pyre -Python Framework for
Coupling CIG Models
∗ CUAHSI data services
∗ NCAR/UCAR resources
∗ WRF
∗ CESM
∗ CSS-Wx
∗ CIG, EarthScope, IRIS, and
UNAVCO resources
FEDERAL
ACADEMIC
Community
Inventory of
EarthCube
Resources for
Geoscience
Interoperability
Goals:
- Create an EathCube platform for registering,
finding and evaluating geoscience resources to
facilitate Earth Science Research
- Engage the community in building and growing
high quality content
- Eventually: cross-link different types of
resources for better navigation and search
CINERGI
Ilya Zaslavsky, Steve Richard
And the CINERGI team
http://workspace.earthcube.org/cinergi
How it fits in an Integrated EarthCube
• Key gateway to EC resources for users
• A platform for other projects to register and find resources, providing
resource cataloguing and metadata value adding (we succeed together)
• A vehicle for people to announce their resources to EC
• Addresses a key EC mode of failure: not knowing what exists
• Basis for metrics, evaluation, identification of gaps, planning
Milestones
• Staging metadata aggregation
• Documentation refinement
• User interfaces
• Community participation (community resource inventories)
Staging
Database
Document processing
components
Harvest adapters
Public access
components
Harvest adapters: components that connect to
information sources and import descriptions of
EarthCube resources into the staging database.
Staging Database: document database that persists the
originally harvested descriptions in their native state, as
well as any additional information or updates resulting
from subsequent processing/curation of the description
Document processing components: components that
pull documents from the staging database, perform
various functions to upgrade content or transform
presentation. The processed document may be pushed
back to the staging database or out to the public access
components
Public access components: components that connect to
document processors and implement external interfaces
to present content for users
Interfacestotheworld
Resource descriptions
Ye Most Excellent EarthCube Inventory System
Modular components
EarthCube Building Blocks –Web Services
 To simplify
 data discovery
▪ Standard and simplified web services supporting space-
time (and more) queries
 Data access
▪ Simplified services also mean simple clients
▪ PERL, MatLab, R, wget, etc
 Data Usability
▪ When possible standard widely used formats will be
supported and when reasonable text output formats will
be available to aid in interdisciplinary access
 Identical or similar access to data resources
across 14 different GEO data collections
 Both domestic and international
 Expansion of the RAMADDA system to
support long-tail of science data
 Data integration for one use case scenario
WS-
BB
IRIS UNAVCO
CUAHSI
SDSC
Columbia
IEDA
Unidata
Caltech
GPlates
CINERGYB-Cube
GGP
UTEP
Gravity
Inter
Magnet
Structural
Geology
NEON
NGDC
OOI
WOVODAT
RAMADDA
LongTail Data
 Standardized space-time queries for 14
geosciences data types/centers
 Data discovery client
 Standardized documentation
 URL builders
 GUI to URL builders to provide proper URL
construction
 Development of Simple clients
 Standard and Simple cross-domain formats
developed
BCube: A Broker Framework
for Next Generation Geoscience
An EarthCube Amendment II
Building Block Award
Aims of the Brokering Building Block
(BCube) Project
• Facilitate the discovery, access and use of data and
information needed by geoscientists working across
disciplinary boundaries
– By mediating (i.e. brokering) interactions between
disciplinary resources (data stores, web-based services)
– In a manner that does not impose requirements on the
providers of those resources
• Document, understand, and suggest ways to enhance
uptake of CI developments by geoscientists
2
How BCube Will Contribute to the
Success of EarthCube
• Demonstrate
– Increased efficiency of geoscientists using the
brokering framework
– Ability to interconnect major disciplinary data
repositories (weather, hydrology, oceans, polar)
– Enhanced data utilization by early career scientists
and education professionals
• Exploring sustainability models for EarthCube
middleware (core infrastructure)
3
Key Milestones and Deliverables
4
Phase 1: Describe water & atmospheric
properties over a domain of space and time
• History
• Current conditions
• Forecasts
Precipitation
Evaporation
Soil Moisture
Streamflow
Groundwater
Reservoirs
• Discrete spatial domains: GIS features (point, line and area) with observations & measurements
• Continuous spatial domains: Grids of measured or modeled variables in geophysical fluid sciences
• Spatially discrete or continuous data may also vary discretely or continuously in time:
one-time samples vs. random points of time vs. regularly spaced intervals of time
EC BB for Integrating Discrete & Continuous Data
David Arctur, Univ of Texas at Austin, February 2014 (DisConBB)
Phase 2: Apply concepts and
methods in other domains
• Solid Earth
• Cryosphere
• Oceans
Common Information Model
+
Data migration
+
Server & user tools
Prototype: Soil Moisture Map & Time Series
This is a common pattern across geosciences –
• Solid Earth: seismic activity, soil chemistry over deep time, …
• Oceans: SST, acidification, …
• Cryosphere: ice thickness, trapped gas content, ...
2014 Outreach
Workshop 1
CUAHSI + Unidata
Users Committees
Examine
interoperability of
hydrologic &
atmospheric data
Tasks for 2014-2015
UT Austin + CUAHSI + Unidata + BYU
2014 Deliverables:
– Information model, server & client tools, and web architecture documentation
– Outreach Workshop 1 – Austin, summer/fall: Hydro + Atmospheric communities
2015 Tasks & Deliverables:
– Continue development based on workshop results; what further work is needed?
– Coordinate with Solid Earth, Oceans, and Cryosphere domains & scenarios
– Outreach Workshop 2 – Boulder, summer/fall: All participating communities
Visualize
and
analyze
Store water
data time
series in
netCDF;
develop
server-based
conversion
tools
Develop
common
Information
Model:
• CUAHSI
Ontology;
• OGC web
services &
WaterML2;
• CF
Conventions
Metadata
& Data
Services
Discovery &
Access
Broker
BCube / GEOSS
EC BB
February 2014 – Boulder, CO – Pascal Hitzler
OceanLink Building Block:
Leveraging Semantics and Linked Data
for Geoscience Data Sharing and
Discovery
Pascal Hitzler
DaSe Lab for Data Semantics
Wright State University
http://www.pascal-hitzler.de
February 2014 – Boulder, CO – Pascal Hitzler 2
OceanLink collaborators
Robert Arko, Columbia University
Suzanne Carbotte, Columbia University
Cynthia Chandler, Woods Hole Oceanographic Institution
Michelle Cheatham, Wright State University
Timothy Finin, University of Maryland, Baltimore County
Pascal Hitzler, Wright State University
Krzysztof Janowicz, University of California, Santa Barbara
Adila Krisnadhi, Wright State University
Thomas Narock, Marymount University
Lisa Raymond, Woods Hole Oceanographic Institution
Adam Shepherd, Woods Hole Oceanographic Institution
Peter Wiebe, Woods Hole Oceanographic Institution
The presented work is part of the NSF OceanLink project:
EarthCube Building Blocks, Leveraging Semantics and Linked Data
for Geoscience Data Sharing and Discovery
February 2014 – Boulder, CO – Pascal Hitzler 3
Cost of data reuse
Weak/no
conceptual model
Strong/monolithic
conceptual model
High reuse cost
Low reuse cost
February 2014 – Boulder, CO – Pascal Hitzler 4
EarthCube requires
• information integration
• interoperability
• conceptual
modeling
• intelligent
search
• data-model
intercomparison
• data publishing
support
Semantic Web studies
• information integration
• interoperability
• conceptual
modeling
• intelligent
search
• data-model
intercomparison
• data publishing
support
Pascal Hitzler, WSU; Krzysztof Janowicz, UCSB
February 2014 – Boulder, CO – Pascal Hitzler 5
Flexible, extendable approach
Ontology Design Patterns
R2R BCO-DMO MBLWHOI
Library
NSF
UI Views
User Interface
mappings
…
February 2014 – Boulder, CO – Pascal Hitzler 6
Thanks!
www.oceanlink.org
February 2014 – Boulder, CO – Pascal Hitzler 7
References
• BCO-DMO: Biological & Chemical Oceanography Data
Management Office, http://www.bco-dmo.org/
• R2R: Rolling Deck to Repository, http://www.rvdata.us
• OceanLink website and publications are forthcoming at
http://www.oceanlink.org/
• Yingjie Hu, Krzysztof Janowicz, David Carral, Simon Scheider,
Werner Kuhn, Gary Berg-Cross, Pascal Hitzler, Mike Dean, Dave
Kolas, A Geo-Ontology Design Pattern for Semantic Trajectories.
In: Thora Tenbrink, John G. Stell, Antony Galton, Zena Wood
(Eds.): Spatial Information Theory - 11th International
Conference, COSIT 2013, Scarborough, UK, September 2-6, 2013.
Proceedings. Lecture Notes in Computer Science Vol. 8116,
Springer, 2013, pp. 438-456.
• http://ontologydesignpatterns.org
February 2014 – Boulder, CO – Pascal Hitzler 8
References
• Pascal Hitzler, Frank van Harmelen, A reasonable Semantic Web.
Semantic Web 1 (1-2), 39-44, 2010.
• Prateek Jain, Pascal Hitzler, Peter Z. Yeh, Kunal Verma, Amit P.
Sheth, Linked Data is Merely More Data. In: Dan Brickley, Vinay K.
Chaudhri, Harry Halpin, Deborah McGuinness: Linked Data Meets
Artificial Intelligence. Technical Report SS-10-07, AAAI Press,
Menlo Park, California, 2010, pp. 82-86. ISBN 978-1-57735-461-1.
Proceedings of LinkedAI at the AAAI Spring Symposium, March
2010.
• Pascal Hitzler, Markus Krötzsch, Sebastian Rudolph, Foundations
of Semantic Web Technologies. Chapman and Hall/CRC Press,
2009.
• Krzysztof Janowicz, Pascal Hitzler, The Digital Earth as Knowledge
Engine. Semantic Web 3 (3), 213-221, 2012.
February 2014 – Boulder, CO – Pascal Hitzler 9
References
• Pascal Hitzler, Krzysztof Janowicz, Linked Data, Big Data, and the
4th Paradigm. Semantic Web 4 (3), 2013, 233-235.
• Gary Berg-Cross, Isabel Cruz, Mike Dean, Tim Finin, Mark Gahegan,
Pascal Hitzler, Hook Hua, Krzysztof Janowicz, Naicong Li, Philip
Murphy, Bryce Nordgren, Leo Obrst, Mark Schildhauer, Amit Sheth,
Krishna Sinha, Anne Thessen, Nancy Wiegand, Ilya Zaslavsky,
Semantics and Ontologies for EarthCube. In: K. Janowicz, C.
Kessler, T. Kauppinen, D. Kolas, S. Scheider (eds.), Workshop on
GIScience in the Big Data Age, In conjunction with the seventh
International Conference on Geographic Information Science 2012
(GIScience 2012), Columbus, Ohio, USA. September 18th, 2012.
Proceedings.
• Krzysztof Janowicz, Pascal Hitzler, Thoughts on the Complex
Relation Between Linked Data, Semantic Annotations, and
Ontologies. In: Paul N. Bennett, Evgeniy Gabrilovich, Jaap Kamps,
Jussi Karlgren (eds.), Proceedings of the 6th International
Workshop on Exploiting Semantic Annotation in Information
Retrieval, ESAIR 2013, ACM, San Francisco, 2013, pp. 41-44.

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Lightning Talks: All EartCube Funded Projects

  • 1. EARTHCUBE FUNDED PROJECTS: LIGHTNING TALKS EarthCube Portfolio Workshop Boulder CO February 12-14, 2014
  • 2. Enabling Transformation in the Social Sciences, Geosciences, and Cyberinfrastructure Support from the National Science Foundation is deeply appreciated: NSF-VOSS EAGER 0956472, “Stakeholder Alignment in Socio- Technical Systems,” NSF OCI RAPID 1229928, “Stakeholder Alignment for EarthCube,” NSF GEO-SciSIP-STS-OCI-INSPIRE 1249607, “Enabling Transformation in the Social Sciences, Geosciences, and Cyberinfrastructure,” NSF OCI 12-56163, “Envisioning Success: A Workshop for Next Generation EarthCube Scholars and Scientists,” NSF I-CORPS 1313562 “Stakeholder Alignment for Public-Private Partnerships,” Stakeholder Alignment Visualization Patent Pending: Serial No. 13/907,291 (2013). Joel Cutcher-Gershenfeld, University of Illinois, Urbana-Champaign Nick Berente, University of Georgia Burcu Bolukbasi, UIUC Nosh Contractor, Northwestern University Leslie DeChurch, Georgia Tech University Courtney Flint, Utah State University Gabe Gershenfeld, Cleveland Indians Michael Haberman, UIUC John L. King, University of Michigan Eric Knight, University of Sydney Spenser Lewis, General Dynamics Barbara Lawrence, UCLA Ethan Masella, Brandeis Uniersity Charles Mcelroy, Case Western Reserve University Barbara Mittleman, Nodality, Inc. Mark Nolan, UIUC Melanie Radik, Brandeis University Namchul Shin, Pace University Susan Winter, University of Maryland
  • 3. 1. What are the overall aims of your project? • Enable agile, sustainable institutional arrangements in support of the EarthCube mission • Document lessons for similar initiatives in other domains, advancing organizational and institutional theory 2. How will your project contribute to the overall success for EarthCube? • Providing situational awareness on views about sharing data, software, and models, as well as related matters, across the geoscience and cyber communities • Helping to facilitate the chartering/instantiation of EC assemblies
  • 4. 3. What are the key milestones and deliverables for your project? 2013 Stakeholder surveys (v1.5) and feedback to 22 EC end user workshops (n=798 / 1,511) Scholarly articles on “internal alignment” and “making data public” 2014 Development and administration of stakeholder survey (v2.0) for past respondents and professional associations Facilitation support for chartering/instantiation of EC assemblies Scholarly articles on “Cooperation and competition in the Geosciences,” “Vies on standards,” and others 2015 Elements of a theory framework for the “science of scienceinstitutions”
  • 5.
  • 7. C4P: Objective • advance the role of cyberinfrastructure (CI) in the study of the geological record • to unravel the large-scale, long- term evolution of the Earth-life system, • across the whole Earth surface, • for any time interval, • at any relevant temporal and spatial resolution. This image cannot currently be displayed.
  • 8. C4P: Challenges • A typical ‘Long-tail’ community: Much fossil data are ‘dark’ • Many databases & informatics efforts, but little coordination or interoperability
  • 9. C4P: Components • Build new partnerships and collaborations among geoscientists and technologists • Survey and catalog existing resources • Share news of the latest advances in cyberscience and paleo-geoinformatics • Facilitate development of common standards and semantic frameworks CoreWall
  • 10. C4P: Themes • SAMPLES • improve access and re-use of samples through integration into digital data infrastructures; • METHODS • document provenance of data and derived data products in compliance with emerging best practices and standards to ensure re-usability, reproducibility and trust for data providers and data users; • SYNTHESIS • improve utilization of time as a unifying parameter in paleogeoscience CI and broader EarthCube interoperability • develop & promote metadata standards and data services to integrate paleobioscience CI resources.
  • 11. C4P: Activities • Cataloging existing cyberinfrastructure resources in the paleobiosciences • Sub award to NCDC to generate ISO metadata records, work with CINERGI • Workshops: • Paleobioinformatics (May 21-23, 2014, COL, Washington, DC) • Geochronology “Overcoming Barriers to Computation and Visualization with Geologic Time” (Fall 2014, Madison, WI) • Synthesis (Spring 2015, Lamont) • Town Halls & Early Career Symposia at GSA, AGU, ESIP • Travel support for early career scientists
  • 13. C4P: Activities • Outreach via Social Media • Twitter: #EarthCubeC4P • EarthCube Website: http://workspace.earthcube.org/c4p • YouTube Channel: http://www.youtube.com/cyber4paleo • Discussion group: cyber4paleo@earthcube.org
  • 14. C4P: Steering Committee • Lehnert, Kerstin IEDA, Columbia University • Anderson, David M. NOAA, National Climatic Data Center • Fils, Douglas Consortium for Ocean Leadership • Jenkins, Chris University of Colorado at Boulder • Lenhardt, Christopher Renaissance Computing Institute • Noren, Anders University of Minnesota • Olszewski, Thomas Texas A&M University • Smith, Dena University of Colorado at Boulder • Uhen, Mark George Mason University • Williams, Jack University of Wisconsin-Madison • Project Management: Leslie Hsu (IEDA, Columbia University)
  • 15.
  • 16. EC3—Earth-Centered Communication for Cyberinfrastructure: Challenges of field data collection, management, and integration Steering Committee Membership: Richard Allmendinger, Cornell U; Jim Bowring, College of Charleston; Marjorie Chan, U of Utah; Amy Ellwein, Rocky Mountain Bio Lab; Yolanda Gil, U of Southern CA; Paul Harnik, Franklin and Marshall College; Eric Kirby, Penn State U; Ali Kooshesh, Sonoma State U; Matty Mookerjee, Sonoma State U; Rick Morrison, Comprehend Systems Inc; Terry Pavlis, U of Texas, El Paso; Shanan Peters, U of Wisc, Madison; Bala Ravikumar, Sonoma State U; Paul Selden, U of Kansas; Thomas Shipley, Temple U; Frank Spear, Rensselaer Poly. Inst; Basil Tikoff, U of Wisc, Madison; Douglas Walker, U of Kansas; Mike Williams, U of Mass., Amherst Initiate relationships and collaborations between field-based geoscientists and computer scientists Why Concentrate on Field-based disciplines of the Geosciences? Common set of challenges with regards to digitizing our data and making those data available through community databases. Fieldwork provides essential information about the long-term history of the Earth’s atmosphere, oceans, and tectonic cycles. There is no better place to have these conversations than in the field Summer 2014 field trip: Yosemite/Owen’s Valley, Aug 4th-8th Summer 2015 field trip: TBA Applications to participate in fieldtrips: Form available at: http://earthcube.org/page/workshops Deadline: March 10th e-mail applications to matty.mookerjee@sonoma.edu
  • 17.
  • 18. RCN  SEN:  Building  a  Sediment   Experimentalists  Network   Wonsuck  Kim  (UT  AusAn)   Leslie  Hsu  (LDEO)   Brandon  McElroy  (U  Wyoming)   Raleigh  MarAn  (UCLA)   deltas   ripples   floods   channels   meanders   mountains  
  • 19. Overall  aims  of  SEN  project   •  Build  the  community  and  discussion  forums:  provide   places  for  sharing  ideas  and  work,  acAvely  recruiAng   content.   •  Create  centralized  resources:  a  place  to  go  to  find   informaAon  and  ask  quesAons  about  data   management  and  experimental  procedures.   •  Disseminate  guidelines,  standards,  best  prac@ces:   have  the  discussion  of  what  metadata  and  standards   are  needed  to  re-­‐use  data  and  re-­‐create  experiments.   EarthCube  PorTolio  MeeAng,  Feb  2014,  RCN  SEN  
  • 20. SEN  Contribu@ons  to  EarthCube   •  “Real”  domain  scien@sts  and  data:  tractable  group   size  (order  100s)  with  close  Aes  to  larger  Earth  surface   group  (order  1000s),  Aght-­‐knit  community   •  Early  career  component:  many  or  most   experimentalists  are  early  career  –  graduate  students   or  postdocs,  more  willing  to  try  new  tools   •  Almost  a  blank  slate:  A  community  with  fewer   organized  legacy  databases  and  tools  –  acknowledges   the  need  for  help,  more  likely  to  use  EC  resources     EarthCube  PorTolio  MeeAng,  Feb  2014,  RCN  SEN  
  • 21. SEN  milestones  and  deliverables    hp://workspace.earthcube.org/sen/group-­‐tasks/sen-­‐year-­‐1-­‐tasks   •  SEN-­‐KB:  Knowledge  base:                                                                                                             Wiki  and  data  catalog  for  experimental  data  and   procedures   •  SEN-­‐ED:  Educa@on                                                                                                                                       Discussion  and  disseminaAon  of  standards  and  guidelines.   DocumentaAon  of  discussion  and  outcomes.   •  SEN-­‐EC:  Experimental  collaboratories:                                         Networked  laboratories  with  broadcasAng  abiliAes  for   shared  experiments     EarthCube  PorTolio  MeeAng,  Feb  2014,  RCN  SEN  
  • 22.
  • 23. Enterprise Architecture for Transformative Research and Collaboration Across the Geosciences  Paradigm: Emergence, Self-organizing system requires more direct interaction between agents in the system  Technology-enabled feedback between users cultivates an emergent, self-organizing system Resources Activities Usage Log Recommendations Impact Analysis Publication Discussion Data use Data revision Annotation… People Models Data…
  • 24. How it fits in an Integrated EarthCube • Provide specific proposal for system design as a straw man to promote community convergence Milestones • Draft white paper – Use cases – Requirements – Existing architecture – Proposed design • System architects summit • Final white paper
  • 25. Products • Community discussion of scope, use cases, integration of existing components • White paper documenting vision and conceptual architecture • Concrete proposal to drive community discussion and convergence on EarthCube design
  • 26.
  • 27. CD: Developing a Data-Oriented Human-Centric Enterprise Architecture for EarthCube Phil Yang and Chen Xu, NSF Spatiotemporal Innovation Center George Mason Univ. Carol Meyer, ESIP
  • 28. User Interfaces Applications Data Services Geoscientists EarthCube Administrator Educators On-Demand Work-Flow Chaining Layer Interdisciplinary Data & Business Interoperability Layer Geological Geophysical Biological Climatology DataandInformationProvenance Geospatial Portal Geochemistry Petrology Sedimentology … … Modeling Capability Big Data Analytics Pre and Post Processing Public Generic CI Services Data Discovery Data Access Data Visualization Data Publication Modeling Geological Portal Modeling GUI Rivers Portal Citizen Science Portal Seismic Portal … … … …
  • 29. EarthCube Project Project Portfolio Relationships Project Timelines Project to Capability Mapping Capability Vision Capability Taxonomy Capability Phasing Capability Dependencies Capability to Operational Capability to Services High Level Operational Operational Resource Flow Operational Relationships Operational Activities Service Context Service Resource Flow Service to System System Interface System Resource Flow System to System System Functionality System back to Operational Conceptual Data Model Physical Data Model Logical Data Model Technical Standards
  • 30. EarthCubeEnterpriseArchitectureOverview Overarchingaspectsofarchitecturethatrelateto EarthCubeEnterpriseArchitecture EarthCubeArchitectureDictionary Articulatethedatarelationshipsandalignment structuresintheEarthCubeArchitectureContent TechnicalStandards ArticulateapplicableOperationalandTechnical standardsandguidance EarthCube Operational Articulate EarthCube operational scenarios, processes, activities and requirements EarthCube Services Articulate the performers, activities, services, and their exchanges providing for, or supporting EarthCube functions EarthCube Systems Articulate the legacy systems or independent systems, their composition, interconnectivity, and context providing for or supporting EarthCube functions EarthCubeProject ExemplifyhowtousetheEarthCubeEA toGuideProjectDesign Volume I Volume III Volume II Volume IV Overall Aims of the Project Our Conceptual Design project targets the conceptual design of an EarthCube enterprise architecture to facilitate data communication and human collaboration in pursuit of collaborative geosciences. EarthCube Capability Articulate the capability requirement, delivery timing, and deployed capability
  • 31. Benefits to the EarthCube Enterprise • Supporting strategic planning and alignment of business and EarthCube goals and objectives • Maintaining baseline and target architecture information in a system repository • Ensuring EarthCube projects align with Enterprise Architecture • Defining a performance management framework for guiding the success of projects • Identifying technical and process improvement opportunities • Identifying opportunities for collaboration, reuse, data sharing and consolidation • Documenting enterprise service capabilities available for use across the EarthCube • Ensuring alignment with relevant cross-disciplinary and International initiatives Collection PresentationProcess Multi-Party Collaboration Data-Owner Obligation Public Partaking CKN The Core EarthCube Conceptual Model Collection: Data / service Process: Data analytics Presentation: Results visualization Data-owner: EarthCube stakeholders capable of data production Multi-party: EarthCube participants Public: Third party outside of EarthCube enterprise
  • 32. Milestones and Deliverables EarthCube Design Initial Write-up Volume I Overview and Summary Information Volume II EarthCube Cyberinfrastructure Architecture Design: System, Operation, and Standards Volume III EarthCube Enterprise Architecture Dictionary Volume IV EarthCube EA Use Case – Polar CI Project
  • 33. EarthCube Enterprise Architecture Workshop at ESIP Summer Meeting • Point of Contact: Carol Meyer, ESIP Executive Director • Date: July 7, 2014 • Location: Copper Mountain, Colorado • Content: Domain experts to review and comment on the design – Pick one or more volumes to comment – Discuss comment at ESIP Summer Meeting – Provide advice on improving the EA • Support: – $700/expert for up to 10 experts • Call for participation will be out soon, please help get the word out
  • 34.
  • 35. EarthCube Building Block ODSIP: Open Data Services Invocation Protocol Dave Fulker (OPeNDAP), PI Mohan Ramamurthy (Unidata), Co-PI Senior Personnel: Brian Blanton (RENCI), Steve Businger (U-Hawaii), Peter Cornillon (U-Rhode Island)
  • 36. Overarching Goal • We propose building blocks—open specifications, realized in client/server libraries—for a model and protocol by which clients invoke a rich set of data- acquisition services. – Services will range from statistical summarization and criteria-driven subsetting to regridding/resampling. • ODSIP will build on the newest version of OPeNDAP’s data-access protocol, DAP4, now being tested under a collaborative, NOAA-funded OPeNDAP-Unidata project, designed to accommodate extensions of the sort proposed here.
  • 37. Building Block Objectives • An open specification for ODSIP (as a DAP4 extension, suitable for eventual OGC adoption). – DAP, Data Access Protocol, is the underpinning for OPeNDAP • Reference implementations of ODSIP in open- source libraries callable from multiple languages. • Demonstrations, in openly accessible clients and servers, illustrating how ODSIP services may be invoked to support diverse geoscience scenarios
  • 38. Representative Use Cases 1. Accelerated Visualization/Analysis of Model Outputs on Non-Rectangular Meshes 2. Dynamic Downscaling of Climate Predictions for Regional Utility 3. Feature-Oriented Retrievals of Satellite Imagery
  • 39. EarthCube Relevance • EarthCube will benefit from a conceptually rich and widely deployed protocol for data-acquisition. To that end, our BB work will enable development of servers and clients that implement just such a protocol, namely, ODSIP. • While the eventual benefits of our work will be manifest as numerous ODSIP-compliant servers and clients, the immediate outcomes will be to support their creation. • The ODSIP project will contribute toward addressing challenges EarthCube faces toward truly transforming multiscale and multidisciplinary research and education.
  • 40. A Rough Time Table
  • 41.
  • 42. Software Stewardship for Geosciences Principal Investigators: Christopher J. Duffy Department of Civil and Environmental Engineering, Penn State University Yolanda Gil Information Sciences Institute, University of Southern California Department of Computer Science, University of Southern California James D. Herbsleb Institute for Software Research, Carnegie Mellon University Chris A. Mattmann NASA Jet Propulsion Laboratory Department of Computer Science, University of Southern California Scott D. Peckham Department of Hydrologic Sciences, University of Colorado Erin Robinson Foundation for Earth Science NSF ICER-1343800 geosoft.earthcube.org
  • 43. The Importance of Geosciences Software • EarthCube aims to enable scientists solve challenging problems that span diverse geoscience domains – This requires not only data sharing but new forms of knowledge sharing • The focus of our project is on helping scientists to share knowledge concerning the software they develop
  • 44. Problems: (I) Software Cost – “Scientists and engineers spend more than 60% of their time just preparing the data for model input or data-model comparison” (NASA A40) “Common Motifs in Scientific Workflows: An Empirical Analysis.” Garijo, D.; Alper, P.; Belhajjame, K.; Corcho, O.; Gil, Y.; and Goble, C. Future Generation Computer Systems, 2013.
  • 46. GeoSoft: Software Stewardship for Geosciences • An on-line community for sharing knowledge about geosciences software • Project involves: geoscientists, social scientists expert in on-line communities, and computer scientists expert in knowledge capture, open source software, and software reuse
  • 47. Fully coupled multi-process model Edited by CDuffy 11 Feb 14 2:56pm Push API (to CSDMS and others
  • 49.
  • 50. GeoSoft: Software Stewardship for Geosciences • Ongoing work: – Intelligent assistance to describe new software: how to use it appropriately, what kinds of data, how it relates to other software – Sophisticated search capabilities to find software for their needs – Interactive advice on open source software, forming successful developer communities, and other software sharing topics
  • 51.
  • 52. Earth System Bridge An NSF funded EarthCube Building Block Scott Peckham, CU-Boulder, PI Co-PIs Jennifer Arrigo (CUAHSI), Cecelia Deluca (NOAA, CIRES), David Gochis (NCAR), Rocky Dunlap (GA Tech), Anna Kelbert & Gary Egbert (OSU), Eunseo Choi (Memphis)
  • 53. What is the Big Picture? Geoscientists are problem solvers. Problem solving is sometimes about creating new resources (e.g. models, data sets or web services), but very often requires connecting a set of existing resources. The problem is that these resources are very hetereogeneous and are often designed for a specific environment (e.g. PC or HPC) . This makes them hard to connect. We seek interoperability. We have learned that the key to interoperability is to have standardized "metadata" descriptions of the resources that need to be connected to solve a problem. Given sufficient metadata, frameworks can be designed to automatically query and then reconcile differences between the resources to be connected.
  • 54. The Science Goal: Improving Environmental Modeling Predictions ∗ Mission-Driven agencies providing predictions ∗ Efficient data and computational enterprise ∗ Information to protect life and property ∗ Academic Enterprise ∗ Geoscientists advancing the science ∗ Computer scientists advancing the technology ∗ Scientific inquiry and hypothesis testing “Bridging the Gap” to Enable Research-to-Operations Operations-to-Research
  • 55. Building the Bridge ∗ Framework Definition Language (FDL) ∗ Metadata specification ∗ Application Architecture ∗ Protocols for interaction ∗ Mechanics and Implementation ∗ Build a series of bridges ∗ Semantic ∗ Frameworks ∗ new services to improve the integration of inter-agency, four- dimensional databases with more heterogeneous academic databases
  • 56. Initial Groups for Demonstration ∗ ESMF- Earth System Modeling Framework ∗ NUOPC - National Unified Operational Prediction Capability – Layer to enhance interoperability ∗ CSDMS - Community Surface Dynamics Modeling System ∗ Pyre -Python Framework for Coupling CIG Models ∗ CUAHSI data services ∗ NCAR/UCAR resources ∗ WRF ∗ CESM ∗ CSS-Wx ∗ CIG, EarthScope, IRIS, and UNAVCO resources FEDERAL ACADEMIC
  • 57.
  • 58. Community Inventory of EarthCube Resources for Geoscience Interoperability Goals: - Create an EathCube platform for registering, finding and evaluating geoscience resources to facilitate Earth Science Research - Engage the community in building and growing high quality content - Eventually: cross-link different types of resources for better navigation and search CINERGI Ilya Zaslavsky, Steve Richard And the CINERGI team http://workspace.earthcube.org/cinergi
  • 59. How it fits in an Integrated EarthCube • Key gateway to EC resources for users • A platform for other projects to register and find resources, providing resource cataloguing and metadata value adding (we succeed together) • A vehicle for people to announce their resources to EC • Addresses a key EC mode of failure: not knowing what exists • Basis for metrics, evaluation, identification of gaps, planning Milestones • Staging metadata aggregation • Documentation refinement • User interfaces • Community participation (community resource inventories)
  • 60. Staging Database Document processing components Harvest adapters Public access components Harvest adapters: components that connect to information sources and import descriptions of EarthCube resources into the staging database. Staging Database: document database that persists the originally harvested descriptions in their native state, as well as any additional information or updates resulting from subsequent processing/curation of the description Document processing components: components that pull documents from the staging database, perform various functions to upgrade content or transform presentation. The processed document may be pushed back to the staging database or out to the public access components Public access components: components that connect to document processors and implement external interfaces to present content for users Interfacestotheworld Resource descriptions Ye Most Excellent EarthCube Inventory System Modular components
  • 61.
  • 62. EarthCube Building Blocks –Web Services
  • 63.  To simplify  data discovery ▪ Standard and simplified web services supporting space- time (and more) queries  Data access ▪ Simplified services also mean simple clients ▪ PERL, MatLab, R, wget, etc  Data Usability ▪ When possible standard widely used formats will be supported and when reasonable text output formats will be available to aid in interdisciplinary access
  • 64.  Identical or similar access to data resources across 14 different GEO data collections  Both domestic and international  Expansion of the RAMADDA system to support long-tail of science data  Data integration for one use case scenario
  • 66.  Standardized space-time queries for 14 geosciences data types/centers  Data discovery client  Standardized documentation  URL builders  GUI to URL builders to provide proper URL construction  Development of Simple clients  Standard and Simple cross-domain formats developed
  • 67.
  • 68. BCube: A Broker Framework for Next Generation Geoscience An EarthCube Amendment II Building Block Award
  • 69. Aims of the Brokering Building Block (BCube) Project • Facilitate the discovery, access and use of data and information needed by geoscientists working across disciplinary boundaries – By mediating (i.e. brokering) interactions between disciplinary resources (data stores, web-based services) – In a manner that does not impose requirements on the providers of those resources • Document, understand, and suggest ways to enhance uptake of CI developments by geoscientists 2
  • 70. How BCube Will Contribute to the Success of EarthCube • Demonstrate – Increased efficiency of geoscientists using the brokering framework – Ability to interconnect major disciplinary data repositories (weather, hydrology, oceans, polar) – Enhanced data utilization by early career scientists and education professionals • Exploring sustainability models for EarthCube middleware (core infrastructure) 3
  • 71. Key Milestones and Deliverables 4
  • 72.
  • 73. Phase 1: Describe water & atmospheric properties over a domain of space and time • History • Current conditions • Forecasts Precipitation Evaporation Soil Moisture Streamflow Groundwater Reservoirs • Discrete spatial domains: GIS features (point, line and area) with observations & measurements • Continuous spatial domains: Grids of measured or modeled variables in geophysical fluid sciences • Spatially discrete or continuous data may also vary discretely or continuously in time: one-time samples vs. random points of time vs. regularly spaced intervals of time EC BB for Integrating Discrete & Continuous Data David Arctur, Univ of Texas at Austin, February 2014 (DisConBB) Phase 2: Apply concepts and methods in other domains • Solid Earth • Cryosphere • Oceans Common Information Model + Data migration + Server & user tools
  • 74. Prototype: Soil Moisture Map & Time Series This is a common pattern across geosciences – • Solid Earth: seismic activity, soil chemistry over deep time, … • Oceans: SST, acidification, … • Cryosphere: ice thickness, trapped gas content, ...
  • 75. 2014 Outreach Workshop 1 CUAHSI + Unidata Users Committees Examine interoperability of hydrologic & atmospheric data Tasks for 2014-2015 UT Austin + CUAHSI + Unidata + BYU 2014 Deliverables: – Information model, server & client tools, and web architecture documentation – Outreach Workshop 1 – Austin, summer/fall: Hydro + Atmospheric communities 2015 Tasks & Deliverables: – Continue development based on workshop results; what further work is needed? – Coordinate with Solid Earth, Oceans, and Cryosphere domains & scenarios – Outreach Workshop 2 – Boulder, summer/fall: All participating communities Visualize and analyze Store water data time series in netCDF; develop server-based conversion tools Develop common Information Model: • CUAHSI Ontology; • OGC web services & WaterML2; • CF Conventions Metadata & Data Services Discovery & Access Broker BCube / GEOSS EC BB
  • 76.
  • 77. February 2014 – Boulder, CO – Pascal Hitzler OceanLink Building Block: Leveraging Semantics and Linked Data for Geoscience Data Sharing and Discovery Pascal Hitzler DaSe Lab for Data Semantics Wright State University http://www.pascal-hitzler.de
  • 78. February 2014 – Boulder, CO – Pascal Hitzler 2 OceanLink collaborators Robert Arko, Columbia University Suzanne Carbotte, Columbia University Cynthia Chandler, Woods Hole Oceanographic Institution Michelle Cheatham, Wright State University Timothy Finin, University of Maryland, Baltimore County Pascal Hitzler, Wright State University Krzysztof Janowicz, University of California, Santa Barbara Adila Krisnadhi, Wright State University Thomas Narock, Marymount University Lisa Raymond, Woods Hole Oceanographic Institution Adam Shepherd, Woods Hole Oceanographic Institution Peter Wiebe, Woods Hole Oceanographic Institution The presented work is part of the NSF OceanLink project: EarthCube Building Blocks, Leveraging Semantics and Linked Data for Geoscience Data Sharing and Discovery
  • 79. February 2014 – Boulder, CO – Pascal Hitzler 3 Cost of data reuse Weak/no conceptual model Strong/monolithic conceptual model High reuse cost Low reuse cost
  • 80. February 2014 – Boulder, CO – Pascal Hitzler 4 EarthCube requires • information integration • interoperability • conceptual modeling • intelligent search • data-model intercomparison • data publishing support Semantic Web studies • information integration • interoperability • conceptual modeling • intelligent search • data-model intercomparison • data publishing support Pascal Hitzler, WSU; Krzysztof Janowicz, UCSB
  • 81. February 2014 – Boulder, CO – Pascal Hitzler 5 Flexible, extendable approach Ontology Design Patterns R2R BCO-DMO MBLWHOI Library NSF UI Views User Interface mappings …
  • 82. February 2014 – Boulder, CO – Pascal Hitzler 6 Thanks! www.oceanlink.org
  • 83. February 2014 – Boulder, CO – Pascal Hitzler 7 References • BCO-DMO: Biological & Chemical Oceanography Data Management Office, http://www.bco-dmo.org/ • R2R: Rolling Deck to Repository, http://www.rvdata.us • OceanLink website and publications are forthcoming at http://www.oceanlink.org/ • Yingjie Hu, Krzysztof Janowicz, David Carral, Simon Scheider, Werner Kuhn, Gary Berg-Cross, Pascal Hitzler, Mike Dean, Dave Kolas, A Geo-Ontology Design Pattern for Semantic Trajectories. In: Thora Tenbrink, John G. Stell, Antony Galton, Zena Wood (Eds.): Spatial Information Theory - 11th International Conference, COSIT 2013, Scarborough, UK, September 2-6, 2013. Proceedings. Lecture Notes in Computer Science Vol. 8116, Springer, 2013, pp. 438-456. • http://ontologydesignpatterns.org
  • 84. February 2014 – Boulder, CO – Pascal Hitzler 8 References • Pascal Hitzler, Frank van Harmelen, A reasonable Semantic Web. Semantic Web 1 (1-2), 39-44, 2010. • Prateek Jain, Pascal Hitzler, Peter Z. Yeh, Kunal Verma, Amit P. Sheth, Linked Data is Merely More Data. In: Dan Brickley, Vinay K. Chaudhri, Harry Halpin, Deborah McGuinness: Linked Data Meets Artificial Intelligence. Technical Report SS-10-07, AAAI Press, Menlo Park, California, 2010, pp. 82-86. ISBN 978-1-57735-461-1. Proceedings of LinkedAI at the AAAI Spring Symposium, March 2010. • Pascal Hitzler, Markus Krötzsch, Sebastian Rudolph, Foundations of Semantic Web Technologies. Chapman and Hall/CRC Press, 2009. • Krzysztof Janowicz, Pascal Hitzler, The Digital Earth as Knowledge Engine. Semantic Web 3 (3), 213-221, 2012.
  • 85. February 2014 – Boulder, CO – Pascal Hitzler 9 References • Pascal Hitzler, Krzysztof Janowicz, Linked Data, Big Data, and the 4th Paradigm. Semantic Web 4 (3), 2013, 233-235. • Gary Berg-Cross, Isabel Cruz, Mike Dean, Tim Finin, Mark Gahegan, Pascal Hitzler, Hook Hua, Krzysztof Janowicz, Naicong Li, Philip Murphy, Bryce Nordgren, Leo Obrst, Mark Schildhauer, Amit Sheth, Krishna Sinha, Anne Thessen, Nancy Wiegand, Ilya Zaslavsky, Semantics and Ontologies for EarthCube. In: K. Janowicz, C. Kessler, T. Kauppinen, D. Kolas, S. Scheider (eds.), Workshop on GIScience in the Big Data Age, In conjunction with the seventh International Conference on Geographic Information Science 2012 (GIScience 2012), Columbus, Ohio, USA. September 18th, 2012. Proceedings. • Krzysztof Janowicz, Pascal Hitzler, Thoughts on the Complex Relation Between Linked Data, Semantic Annotations, and Ontologies. In: Paul N. Bennett, Evgeniy Gabrilovich, Jaap Kamps, Jussi Karlgren (eds.), Proceedings of the 6th International Workshop on Exploiting Semantic Annotation in Information Retrieval, ESAIR 2013, ACM, San Francisco, 2013, pp. 41-44.