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SeqAn (www.seqan.de) is an open-source C++ template library (BSD license) that implements many efficient and generic data structures and algorithms for Next-Generation Sequencing (NGS) analysis. It contains gapped k-mer indices, enhanced suffix arrays (ESA) or an FM-index, as well algorithms for fast and accurate alignment or read mapping. Based on those data types and fast I/O routines, users can easily develop tools that are extremely efficient and easy to maintain. Besides multi-core, the research team at Freie Universität Berlin has started generic support for distinguished accelerators such as NVIDIA GPUs. Go through the slides to learn more. For your own BI development you can try GPUs for free here: www.Nvidia.com/GPUTestDrive
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