http://slideshare.net/cameronneylon




Monday, March 9, 2009
In the last five years...?




http://flickr.com/photos/stewart/461099066/
Monday, March 9, 2009
...in the past 24 hours?
Monday, March 9, 2009
http://www.flickr.com/photos/nbachiyski/2186228572/
Monday, March 9, 2009
...is to the fully integrated
                laboratory record...



Monday, March 9, 2009
as...



Monday, March 9, 2009
Monday, March 9, 2009
is to...



Monday, March 9, 2009
Monday, March 9, 2009
The Lab that was Born on the
              Web
                        Cameron Neylon



Monday, March 9, 2009
Lab book as a journal...




  http://www.flickr.com/photos/nbachiyski/2186228572/
Monday, March 9, 2009
Blog as journal...




Monday, March 9, 2009
Description, date
                        categorisation,
                        objects, identity,
                     ...
http://biolab.isis.rl.ac.uk/projects/blog/
Monday, March 9, 2009
Automatic Blogging by Machines




Monday, March 9, 2009
Integration and communication




                        http://pipes.yahoo.com
Monday, March 9, 2009
Monday, March 9, 2009
http://biolab.isis.rl.ac.uk/projects/blog/
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Procedure            Experiment



   Material                         Sample


                                          ...
Procedure              Experiment



   Material                         Sample
    Material                         Sampl...
Monday, March 9, 2009
Schema?

    Stuff gets combined with other stuff and
     stuff is done to it to make more stuff.


              (Meanin...
Data                                             Data
                                             Data
                  ...
Data                                             Data
                                             Data
                  ...
Data services




     ...get someone else to do the heavy lifting...
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Good data services will...
      Provide a URL endpoint for any item
  


      Will understand your data type enough...
...
Data                                             Data
                                             Data
                  ...
Data                                         Data


 Samples can be offloaded...                Data
                     ...
Data                                             Data

 Procedures are just documents...            Data
                 ...
Measuring solubility



Monday, March 9, 2009
http://onschallenge.wikispaces.com/Exp026
Monday, March 9, 2009
http://tinyurl.com/ons-challenge-spreadsheet
Monday, March 9, 2009
http://oru.edu/cccda/sl/descriptorspace/ds.php

Monday, March 9, 2009
http://oru.edu/cccda/sl/descriptorspace/ds.php

Monday, March 9, 2009
Monday, March 9, 2009
http://slurl.com/secondlife/Drexel/165/178/24

Monday, March 9, 2009
113 individual measurements
                     (plus 71 literature values)
                 14 researchers in four count...
113 individual measurements
                     (plus 71 literature values)
                 14 researchers in four count...
If we push it all out to other services...




Monday, March 9, 2009
...what are we left with?




Monday, March 9, 2009
Time
Monday, March 9, 2009
The feed of links between resources




                                                 Time

Monday, March 9, 2009
How do you capture this?




Monday, March 9, 2009
Capture it at source...

                        ...in context




                          http://flickr.com/photos/jason...
...rather than wait till here




http://flickr.com/photos/clairity/114084801/
Monday, March 9, 2009
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [...
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [...
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [...
A framework. Not a system.



Monday, March 9, 2009
Standardize the connections



Monday, March 9, 2009
Not the endpoints



Monday, March 9, 2009
Why does this matter to you?



Monday, March 9, 2009
networks of events/objects…
Monday, March 9, 2009
networks of publications…




© Cell Press, Nature Publishing Group, American
Chem Soc, American Soc Microbiology, fair us...
networks of
                        people…
Monday, March 9, 2009
network of science?
Monday, March 9, 2009
http://www.mapofscience.com/
Monday, March 9, 2009
Monday, March 9, 2009
Not just papers, but ideas,
         web pages, data, materials,
                  software




Monday, March 9, 2009
Monday, March 9, 2009
And if the cited objects are
           not open and available?




Monday, March 9, 2009
Monday, March 9, 2009
Research impact
                               =
                        Google PageRank


Monday, March 9, 2009
High PageRank
                      =
            Wired into the network


Monday, March 9, 2009
=



Monday, March 9, 2009
Available



Monday, March 9, 2009
The best science

           The best communication

    With the best tools available

Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Need to make an active choice
     about how you interact with
        the “web of science”


Monday, March 9, 2009
Jeremy Frey
   Jenny Hale
   Andrew Milsted
                         Southampton development team
   Simon Coles
   Steve ...
Monday, March 9, 2009
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Soton e-Research talk

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A talk given to the postgraduate course on e-research in the School of Chemistry department of the University of Southampton on March 9 2009. Largely put together with slides from other recent talks.

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  • Soton e-Research talk

    1. 1. http://slideshare.net/cameronneylon Monday, March 9, 2009
    2. 2. In the last five years...? http://flickr.com/photos/stewart/461099066/ Monday, March 9, 2009
    3. 3. ...in the past 24 hours? Monday, March 9, 2009
    4. 4. http://www.flickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009
    5. 5. ...is to the fully integrated laboratory record... Monday, March 9, 2009
    6. 6. as... Monday, March 9, 2009
    7. 7. Monday, March 9, 2009
    8. 8. is to... Monday, March 9, 2009
    9. 9. Monday, March 9, 2009
    10. 10. The Lab that was Born on the Web Cameron Neylon Monday, March 9, 2009
    11. 11. Lab book as a journal... http://www.flickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009
    12. 12. Blog as journal... Monday, March 9, 2009
    13. 13. Description, date categorisation, objects, identity, accessibility... ...not of much interest to most people Monday, March 9, 2009
    14. 14. http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009
    15. 15. Automatic Blogging by Machines Monday, March 9, 2009
    16. 16. Integration and communication http://pipes.yahoo.com Monday, March 9, 2009
    17. 17. Monday, March 9, 2009
    18. 18. http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009
    19. 19. Monday, March 9, 2009
    20. 20. Monday, March 9, 2009
    21. 21. Procedure Experiment Material Sample Data Data Data Analysis Analysis Monday, March 9, 2009
    22. 22. Procedure Experiment Material Sample Material Sample Material Sample Data Data Data Data Data Analysis Analysis Monday, March 9, 2009
    23. 23. Monday, March 9, 2009
    24. 24. Schema? Stuff gets combined with other stuff and stuff is done to it to make more stuff. (Meaning can be layered on later according to specific needs) Monday, March 9, 2009
    25. 25. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
    26. 26. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
    27. 27. Data services ...get someone else to do the heavy lifting... Monday, March 9, 2009
    28. 28. Monday, March 9, 2009
    29. 29. Monday, March 9, 2009
    30. 30. Monday, March 9, 2009
    31. 31. Good data services will... Provide a URL endpoint for any item  Will understand your data type enough...  ...to provide simple embed codes and more sophisticated re-packaging where required Handle versioning, identity, date stamps,  provenance, security, etc... Monday, March 9, 2009
    32. 32. Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
    33. 33. Data Data Samples can be offloaded... Data Data Data Data Analysis Procedure Procedure Analysis LIMS, Database, Blog, Wiki, Spreadsheet... Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
    34. 34. Data Data Procedures are just documents... Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
    35. 35. Measuring solubility Monday, March 9, 2009
    36. 36. http://onschallenge.wikispaces.com/Exp026 Monday, March 9, 2009
    37. 37. http://tinyurl.com/ons-challenge-spreadsheet Monday, March 9, 2009
    38. 38. http://oru.edu/cccda/sl/descriptorspace/ds.php Monday, March 9, 2009
    39. 39. http://oru.edu/cccda/sl/descriptorspace/ds.php Monday, March 9, 2009
    40. 40. Monday, March 9, 2009
    41. 41. http://slurl.com/secondlife/Drexel/165/178/24 Monday, March 9, 2009
    42. 42. 113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Monday, March 9, 2009
    43. 43. 113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Four months Monday, March 9, 2009
    44. 44. If we push it all out to other services... Monday, March 9, 2009
    45. 45. ...what are we left with? Monday, March 9, 2009
    46. 46. Time Monday, March 9, 2009
    47. 47. The feed of links between resources Time Monday, March 9, 2009
    48. 48. How do you capture this? Monday, March 9, 2009
    49. 49. Capture it at source... ...in context http://flickr.com/photos/jason_burmeister/2053139930/ Monday, March 9, 2009
    50. 50. ...rather than wait till here http://flickr.com/photos/clairity/114084801/ Monday, March 9, 2009
    51. 51. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
    52. 52. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
    53. 53. Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
    54. 54. A framework. Not a system. Monday, March 9, 2009
    55. 55. Standardize the connections Monday, March 9, 2009
    56. 56. Not the endpoints Monday, March 9, 2009
    57. 57. Why does this matter to you? Monday, March 9, 2009
    58. 58. networks of events/objects… Monday, March 9, 2009
    59. 59. networks of publications… © Cell Press, Nature Publishing Group, American Chem Soc, American Soc Microbiology, fair use claimed Monday, March 9, 2009
    60. 60. networks of people… Monday, March 9, 2009
    61. 61. network of science? Monday, March 9, 2009
    62. 62. http://www.mapofscience.com/ Monday, March 9, 2009
    63. 63. Monday, March 9, 2009
    64. 64. Not just papers, but ideas, web pages, data, materials, software Monday, March 9, 2009
    65. 65. Monday, March 9, 2009
    66. 66. And if the cited objects are not open and available? Monday, March 9, 2009
    67. 67. Monday, March 9, 2009
    68. 68. Research impact = Google PageRank Monday, March 9, 2009
    69. 69. High PageRank = Wired into the network Monday, March 9, 2009
    70. 70. = Monday, March 9, 2009
    71. 71. Available Monday, March 9, 2009
    72. 72. The best science The best communication With the best tools available Monday, March 9, 2009
    73. 73. Monday, March 9, 2009
    74. 74. Monday, March 9, 2009
    75. 75. Monday, March 9, 2009
    76. 76. Monday, March 9, 2009
    77. 77. Monday, March 9, 2009
    78. 78. Monday, March 9, 2009
    79. 79. Need to make an active choice about how you interact with the “web of science” Monday, March 9, 2009
    80. 80. Jeremy Frey Jenny Hale Andrew Milsted Southampton development team Simon Coles Steve Wilson Mark Borkum Dave de Roure Jean-Claude Bradley Rajarshi Guha Open Notebook Science Andy Lang Solubility Challenge Antony Williams Egon Willighagen Pierre Lindenbaum Monday, March 9, 2009
    81. 81. Monday, March 9, 2009
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