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Soton e-Research talk
 

Soton e-Research talk

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A talk given to the postgraduate course on e-research in the School of Chemistry department of the University of Southampton on March 9 2009. Largely put together with slides from other recent talks.

A talk given to the postgraduate course on e-research in the School of Chemistry department of the University of Southampton on March 9 2009. Largely put together with slides from other recent talks.

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Soton e-Research talk Soton e-Research talk Presentation Transcript

  • http://slideshare.net/cameronneylon Monday, March 9, 2009
  • In the last five years...? http://flickr.com/photos/stewart/461099066/ Monday, March 9, 2009
  • ...in the past 24 hours? Monday, March 9, 2009
  • http://www.flickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009
  • ...is to the fully integrated laboratory record... Monday, March 9, 2009
  • as... Monday, March 9, 2009
  • Monday, March 9, 2009
  • is to... Monday, March 9, 2009
  • Monday, March 9, 2009
  • The Lab that was Born on the Web Cameron Neylon Monday, March 9, 2009
  • Lab book as a journal... http://www.flickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009
  • Blog as journal... Monday, March 9, 2009
  • Description, date categorisation, objects, identity, accessibility... ...not of much interest to most people Monday, March 9, 2009
  • http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009
  • Automatic Blogging by Machines Monday, March 9, 2009
  • Integration and communication http://pipes.yahoo.com Monday, March 9, 2009
  • Monday, March 9, 2009
  • http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Procedure Experiment Material Sample Data Data Data Analysis Analysis Monday, March 9, 2009
  • Procedure Experiment Material Sample Material Sample Material Sample Data Data Data Data Data Analysis Analysis Monday, March 9, 2009
  • Monday, March 9, 2009
  • Schema? Stuff gets combined with other stuff and stuff is done to it to make more stuff. (Meaning can be layered on later according to specific needs) Monday, March 9, 2009
  • Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
  • Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
  • Data services ...get someone else to do the heavy lifting... Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Good data services will... Provide a URL endpoint for any item  Will understand your data type enough...  ...to provide simple embed codes and more sophisticated re-packaging where required Handle versioning, identity, date stamps,  provenance, security, etc... Monday, March 9, 2009
  • Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
  • Data Data Samples can be offloaded... Data Data Data Data Analysis Procedure Procedure Analysis LIMS, Database, Blog, Wiki, Spreadsheet... Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
  • Data Data Procedures are just documents... Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009
  • Measuring solubility Monday, March 9, 2009
  • http://onschallenge.wikispaces.com/Exp026 Monday, March 9, 2009
  • http://tinyurl.com/ons-challenge-spreadsheet Monday, March 9, 2009
  • http://oru.edu/cccda/sl/descriptorspace/ds.php Monday, March 9, 2009
  • http://oru.edu/cccda/sl/descriptorspace/ds.php Monday, March 9, 2009
  • Monday, March 9, 2009
  • http://slurl.com/secondlife/Drexel/165/178/24 Monday, March 9, 2009
  • 113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Monday, March 9, 2009
  • 113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Four months Monday, March 9, 2009
  • If we push it all out to other services... Monday, March 9, 2009
  • ...what are we left with? Monday, March 9, 2009
  • Time Monday, March 9, 2009
  • The feed of links between resources Time Monday, March 9, 2009
  • How do you capture this? Monday, March 9, 2009
  • Capture it at source... ...in context http://flickr.com/photos/jason_burmeister/2053139930/ Monday, March 9, 2009
  • ...rather than wait till here http://flickr.com/photos/clairity/114084801/ Monday, March 9, 2009
  • Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
  • Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
  • Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009
  • A framework. Not a system. Monday, March 9, 2009
  • Standardize the connections Monday, March 9, 2009
  • Not the endpoints Monday, March 9, 2009
  • Why does this matter to you? Monday, March 9, 2009
  • networks of events/objects… Monday, March 9, 2009
  • networks of publications… © Cell Press, Nature Publishing Group, American Chem Soc, American Soc Microbiology, fair use claimed Monday, March 9, 2009
  • networks of people… Monday, March 9, 2009
  • network of science? Monday, March 9, 2009
  • http://www.mapofscience.com/ Monday, March 9, 2009
  • Monday, March 9, 2009
  • Not just papers, but ideas, web pages, data, materials, software Monday, March 9, 2009
  • Monday, March 9, 2009
  • And if the cited objects are not open and available? Monday, March 9, 2009
  • Monday, March 9, 2009
  • Research impact = Google PageRank Monday, March 9, 2009
  • High PageRank = Wired into the network Monday, March 9, 2009
  • = Monday, March 9, 2009
  • Available Monday, March 9, 2009
  • The best science The best communication With the best tools available Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Monday, March 9, 2009
  • Need to make an active choice about how you interact with the “web of science” Monday, March 9, 2009
  • Jeremy Frey Jenny Hale Andrew Milsted Southampton development team Simon Coles Steve Wilson Mark Borkum Dave de Roure Jean-Claude Bradley Rajarshi Guha Open Notebook Science Andy Lang Solubility Challenge Antony Williams Egon Willighagen Pierre Lindenbaum Monday, March 9, 2009
  • Monday, March 9, 2009