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Monday, March 9, 2009
In the last five years...?




http://flickr.com/photos/stewart/461099066/
Monday, March 9, 2009
...in the past 24 hours?
Monday, March 9, 2009
http://www.flickr.com/photos/nbachiyski/2186228572/
Monday, March 9, 2009
...is to the fully integrated
                laboratory record...



Monday, March 9, 2009
as...



Monday, March 9, 2009
Monday, March 9, 2009
is to...



Monday, March 9, 2009
Monday, March 9, 2009
The Lab that was Born on the
              Web
                        Cameron Neylon



Monday, March 9, 2009
Lab book as a journal...




  http://www.flickr.com/photos/nbachiyski/2186228572/
Monday, March 9, 2009
Blog as journal...




Monday, March 9, 2009
Description, date
                        categorisation,
                        objects, identity,
                        accessibility...

                        ...not of much
                        interest to most
                        people
Monday, March 9, 2009
http://biolab.isis.rl.ac.uk/projects/blog/
Monday, March 9, 2009
Automatic Blogging by Machines




Monday, March 9, 2009
Integration and communication




                        http://pipes.yahoo.com
Monday, March 9, 2009
Monday, March 9, 2009
http://biolab.isis.rl.ac.uk/projects/blog/
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Procedure            Experiment



   Material                         Sample


                                                          Data

      Data                          Data



                         Analysis             Analysis



Monday, March 9, 2009
Procedure              Experiment



   Material                         Sample
    Material                         Sample
     Material                         Sample

                                                            Data

      Data                          Data
                                     Data
                                      Data


                         Analysis               Analysis



Monday, March 9, 2009
Monday, March 9, 2009
Schema?

    Stuff gets combined with other stuff and
     stuff is done to it to make more stuff.


              (Meaning can be layered on later
                according to specific needs)


Monday, March 9, 2009
Data                                             Data
                                             Data
                                                                          Data              Data


                                                                          Data

                                 Analysis
                  Procedure
                                                              Procedure          Analysis

     Procedure                        Procedure




                Sample          Material          Sample   Sample


                                Material          Sample   Sample
Material

                                Material          Sample   Sample
                                                                                 Time

Monday, March 9, 2009
Data                                             Data
                                             Data
                                                                          Data              Data


                                                                          Data

                                 Analysis
                  Procedure
                                                              Procedure          Analysis

     Procedure                        Procedure




                Sample          Material          Sample   Sample


                                Material          Sample   Sample
Material

                                Material          Sample   Sample
                                                                                 Time

Monday, March 9, 2009
Data services




     ...get someone else to do the heavy lifting...
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Good data services will...
      Provide a URL endpoint for any item
  


      Will understand your data type enough...
  




      ...to provide simple embed codes and more
      sophisticated re-packaging where required


      Handle versioning, identity, date stamps,
  

      provenance, security, etc...
Monday, March 9, 2009
Data                                             Data
                                             Data
                                                                          Data              Data


                                                                          Data

                                 Analysis
                  Procedure
                                                              Procedure          Analysis

     Procedure                        Procedure




                Sample          Material          Sample   Sample


                                Material          Sample   Sample
Material

                                Material          Sample   Sample


                                                                                 Time
Monday, March 9, 2009
Data                                         Data


 Samples can be offloaded...                Data
                                                                      Data              Data


                                                                      Data

                                 Analysis
                  Procedure
                                                          Procedure          Analysis
 LIMS, Database, Blog, Wiki, Spreadsheet...
   Procedure     Procedure




                Sample          Material      Sample   Sample


                                Material      Sample   Sample
Material

                                Material      Sample   Sample


                                                                             Time
Monday, March 9, 2009
Data                                             Data

 Procedures are just documents...            Data
                                                                          Data              Data


                                                                          Data

                                 Analysis
                  Procedure
                                                              Procedure          Analysis

     Procedure                        Procedure




                Sample          Material          Sample   Sample


                                Material          Sample   Sample
Material

                                Material          Sample   Sample


                                                                                 Time
Monday, March 9, 2009
Measuring solubility



Monday, March 9, 2009
http://onschallenge.wikispaces.com/Exp026
Monday, March 9, 2009
http://tinyurl.com/ons-challenge-spreadsheet
Monday, March 9, 2009
http://oru.edu/cccda/sl/descriptorspace/ds.php

Monday, March 9, 2009
http://oru.edu/cccda/sl/descriptorspace/ds.php

Monday, March 9, 2009
Monday, March 9, 2009
http://slurl.com/secondlife/Drexel/165/178/24

Monday, March 9, 2009
113 individual measurements
                     (plus 71 literature values)
                 14 researchers in four countries
                One undergraduate chemistry class
              $6000 funding (for prizes and chemicals)




Monday, March 9, 2009
113 individual measurements
                     (plus 71 literature values)
                 14 researchers in four countries
                One undergraduate chemistry class
              $6000 funding (for prizes and chemicals)

                           Four months



Monday, March 9, 2009
If we push it all out to other services...




Monday, March 9, 2009
...what are we left with?




Monday, March 9, 2009
Time
Monday, March 9, 2009
The feed of links between resources




                                                 Time

Monday, March 9, 2009
How do you capture this?




Monday, March 9, 2009
Capture it at source...

                        ...in context




                          http://flickr.com/photos/jason_burmeister/2053139930/
Monday, March 9, 2009
...rather than wait till here




http://flickr.com/photos/clairity/114084801/
Monday, March 9, 2009
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [[box]]



  [[Section>Procedure]]
  [[Procedure_Type>electrophoresis_agarose]]
  [[Sandpit_group>ahm2007]]

Monday, March 9, 2009
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [[box]]



  [[Section>Procedure]]
  [[Procedure_Type>electrophoresis_agarose]]
  [[Sandpit_group>ahm2007]]

Monday, March 9, 2009
Lane           Sample   uL
       1        [[DNA:%]] [[box]]
       2        [[DNA:%]] [[box]]
       3        [[DNA:%]] [[box]]



  [[Section>Procedure]]
  [[Procedure_Type>electrophoresis_agarose]]
  [[Sandpit_group>ahm2007]]

Monday, March 9, 2009
A framework. Not a system.



Monday, March 9, 2009
Standardize the connections



Monday, March 9, 2009
Not the endpoints



Monday, March 9, 2009
Why does this matter to you?



Monday, March 9, 2009
networks of events/objects…
Monday, March 9, 2009
networks of publications…




© Cell Press, Nature Publishing Group, American
Chem Soc, American Soc Microbiology, fair use
claimed
Monday, March 9, 2009
networks of
                        people…
Monday, March 9, 2009
network of science?
Monday, March 9, 2009
http://www.mapofscience.com/
Monday, March 9, 2009
Monday, March 9, 2009
Not just papers, but ideas,
         web pages, data, materials,
                  software




Monday, March 9, 2009
Monday, March 9, 2009
And if the cited objects are
           not open and available?




Monday, March 9, 2009
Monday, March 9, 2009
Research impact
                               =
                        Google PageRank


Monday, March 9, 2009
High PageRank
                      =
            Wired into the network


Monday, March 9, 2009
=



Monday, March 9, 2009
Available



Monday, March 9, 2009
The best science

           The best communication

    With the best tools available

Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Monday, March 9, 2009
Need to make an active choice
     about how you interact with
        the “web of science”


Monday, March 9, 2009
Jeremy Frey
   Jenny Hale
   Andrew Milsted
                         Southampton development team
   Simon Coles
   Steve Wilson
   Mark Borkum
   Dave de Roure

   Jean-Claude Bradley
   Rajarshi Guha
                         Open Notebook Science
   Andy Lang
                         Solubility Challenge
   Antony Williams
   Egon Willighagen
   Pierre Lindenbaum

Monday, March 9, 2009
Monday, March 9, 2009

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Soton e-Research talk

Editor's Notes