Soton e-Research talk

http://slideshare.net/cameronneylon Monday, March 9, 2009

In the last ﬁve years...? http://ﬂickr.com/photos/stewart/461099066/ Monday, March 9, 2009

...in the past 24 hours? Monday, March 9, 2009

http://www.ﬂickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009

...is to the fully integrated laboratory record... Monday, March 9, 2009

as... Monday, March 9, 2009

Monday, March 9, 2009

is to... Monday, March 9, 2009

The Lab that was Born on the Web Cameron Neylon Monday, March 9, 2009

Lab book as a journal... http://www.ﬂickr.com/photos/nbachiyski/2186228572/ Monday, March 9, 2009

Blog as journal... Monday, March 9, 2009

Description, date categorisation, objects, identity, accessibility... ...not of much interest to most people Monday, March 9, 2009

http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009

Automatic Blogging by Machines Monday, March 9, 2009

Integration and communication http://pipes.yahoo.com Monday, March 9, 2009

http://biolab.isis.rl.ac.uk/projects/blog/ Monday, March 9, 2009

Procedure Experiment Material Sample Data Data Data Analysis Analysis Monday, March 9, 2009

Procedure Experiment Material Sample Material Sample Material Sample Data Data Data Data Data Analysis Analysis Monday, March 9, 2009

Schema? Stuff gets combined with other stuff and stuff is done to it to make more stuff. (Meaning can be layered on later according to speciﬁc needs) Monday, March 9, 2009

Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009

Data services ...get someone else to do the heavy lifting... Monday, March 9, 2009

Good data services will... Provide a URL endpoint for any item  Will understand your data type enough...  ...to provide simple embed codes and more sophisticated re-packaging where required Handle versioning, identity, date stamps,  provenance, security, etc... Monday, March 9, 2009

Data Data Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009

Data Data Samples can be offloaded... Data Data Data Data Analysis Procedure Procedure Analysis LIMS, Database, Blog, Wiki, Spreadsheet... Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009

Data Data Procedures are just documents... Data Data Data Data Analysis Procedure Procedure Analysis Procedure Procedure Sample Material Sample Sample Material Sample Sample Material Material Sample Sample Time Monday, March 9, 2009

Measuring solubility Monday, March 9, 2009

http://onschallenge.wikispaces.com/Exp026 Monday, March 9, 2009

http://tinyurl.com/ons-challenge-spreadsheet Monday, March 9, 2009

http://oru.edu/cccda/sl/descriptorspace/ds.php Monday, March 9, 2009

http://slurl.com/secondlife/Drexel/165/178/24 Monday, March 9, 2009

113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Monday, March 9, 2009

113 individual measurements (plus 71 literature values) 14 researchers in four countries One undergraduate chemistry class $6000 funding (for prizes and chemicals) Four months Monday, March 9, 2009

If we push it all out to other services... Monday, March 9, 2009

...what are we left with? Monday, March 9, 2009

Time Monday, March 9, 2009

The feed of links between resources Time Monday, March 9, 2009

How do you capture this? Monday, March 9, 2009

Capture it at source... ...in context http://ﬂickr.com/photos/jason_burmeister/2053139930/ Monday, March 9, 2009

...rather than wait till here http://ﬂickr.com/photos/clairity/114084801/ Monday, March 9, 2009

Lane Sample uL 1 [[DNA:%]] [[box]] 2 [[DNA:%]] [[box]] 3 [[DNA:%]] [[box]] [[Section>Procedure]] [[Procedure_Type>electrophoresis_agarose]] [[Sandpit_group>ahm2007]] Monday, March 9, 2009

A framework. Not a system. Monday, March 9, 2009

Standardize the connections Monday, March 9, 2009

Not the endpoints Monday, March 9, 2009

Why does this matter to you? Monday, March 9, 2009

networks of events/objects… Monday, March 9, 2009

networks of publications… © Cell Press, Nature Publishing Group, American Chem Soc, American Soc Microbiology, fair use claimed Monday, March 9, 2009

networks of people… Monday, March 9, 2009

network of science? Monday, March 9, 2009

http://www.mapofscience.com/ Monday, March 9, 2009

Not just papers, but ideas, web pages, data, materials, software Monday, March 9, 2009

And if the cited objects are not open and available? Monday, March 9, 2009

Research impact = Google PageRank Monday, March 9, 2009

High PageRank = Wired into the network Monday, March 9, 2009

= Monday, March 9, 2009

Available Monday, March 9, 2009

The best science The best communication With the best tools available Monday, March 9, 2009

Need to make an active choice about how you interact with the “web of science” Monday, March 9, 2009

Jeremy Frey Jenny Hale Andrew Milsted Southampton development team Simon Coles Steve Wilson Mark Borkum Dave de Roure Jean-Claude Bradley Rajarshi Guha Open Notebook Science Andy Lang Solubility Challenge Antony Williams Egon Willighagen Pierre Lindenbaum Monday, March 9, 2009

Soton e-Research talk

by Cameron Neylon

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