Capturing Process: Challenges and opportunities

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    Capturing Process: Challenges and opportunities - Presentation Transcript

    1. Capturing Process: Promise and Challenges.
    2. http://www.flickr.com/photos/davidcjones/1422043515
    3. The first step... http://www.flickr.com/photos/laprimadonna/3611292727/
    4. ...is to admit we have http://www.flickr.com/photos/schnurrbart/43568532/ CC-BY-SA
    5. Submissions to Genbank 100,000,000,000 75,000,000,000 50,000,000,000 25,000,000,000 0 1982 1986 1990 1994 1998 2002 2006
    6. Average Capacity of Human Scientist 5.00 3.75 2.50 1.25 0 1982 1986 1990 1994 1998 2002 2006
    7. The human scientist (that’s us) Does. Not. Scale.
    8. The web scales
    9. I need help!
    10. ...RDF...XML.... JSON...Rest...Atom Pub...RSS..SOAP... Java...xmlns
    11. ?
    12. ...£££££...
    13. ...computers...don’t I have a nephew who can do that?
    14. OBI...Mibbi... FuGE...OBO...RDF ...standards...XML.. ...standards..
    15. ...wibble...
    16. You’re not a proper scientist unless you do it our way...
    17. http://www.flickr.com/photos/tranchis/3708549622
    18. I want to record the work from my group so I can find it again.
    19. I want to be able to communicate knowledge clearly
    20. I want to record the work from my group so I can find it again.
    21. ...£££££...
    22. I want to be able to take your data and do cool stuff with it
    23. You mean other people might use our work? Can’t be having that!
    24. You mean other people might use our work? Can’t be having that!
    25. You mean other people might use our work? That’s really exciting!
    26. 1. Capture 2. Communicate Communicate Process
    27. Capture research objects...
    28. ...publish to the web...
    29. ...in most appropriate form
    30. ...but useful sharing is harder than publishing http://www.flickr.com/photos/missrogue/107787363
    31. ...need agreed structure http://www.flickr.com/photos/sfllaw/222795669
    32. Machines need structure http://www.flickr.com/photos/yeowatzup/2463225297
    33. ....humans tell stories
    34. Capture research objects
    35. Publish
    36. Capture structure through story telling
    37. A story.
    38. MyTea project: A fully semantic laboratory record for chemistry http://mytea.org.uk/
    39. But not molecular biology
    40. General MyTea Specific Unstructured Structured
    41. General ? MyTea Specific Unstructured Structured
    42. General Blogs ? MyTea Specific Unstructured Structured
    43. A recipe for chaos? http://www.flickr.com/photos/benuski/3452291541
    44. Yes to start with...
    45. But then something interesting happened...
    46. Templates Metadata
    47. Self assembling ontology? Sequence ontology: SO:0000696 “oligo” SO:0000155 “plasmid” ...but... SO:0000006 “PCR product” or SO:0000412 “rest. fragment”?
    48. Capture first... http://www.flickr.com/photos/furtwangl/3851841424
    49. Dionaea muscipula Musca domestica chomped on ...then add structure
    50. Map our process onto agreed vocabularies
    51. ...when we tell the story http://www.flickr.com/photos/tnarik/366393127
    52. Tools that capture structure as we choose the pieces for our narrative
    53. Tools that exploit structure where it already exists
    54. Instruments as bloggers...
    55. Tools to tell stories?
    56. Tools to wire up the objects?
    57. Tools to connect to services?
    58. Google Wave as a Solution
    59. Euan Adie’s Igor Robot User conversation with services
    60. ChemSpidey Linking identifiers to databases
    61. Workflows Robots can interact with each other easily
    62. The potential
    63. Natural user interaction Easy user interaction with web services and databases Per user, per experiment, per group storage of information
    64. Problems...
    65. The client. User understanding.
    66. Conclusions.
    67. Average Capacity of Human Scientist 5.00 3.75 2.50 1.25 0 1982 1986 1990 1994 1998 2002 2006
    68. I need help!
    69. Machines need structure http://www.flickr.com/photos/yeowatzup/2463225297
    70. ....humans tell stories
    71. Tools to capture...
    72. ...tools and services to publish...
    73. ...tools to capture structure ...as we tell the story
    74. Capturing.
    75. Communication.
    76. Two different things.
    77. Less of this... http://www.flickr.com/photos/tranchis/3708549622
    78. ...more of this http://www.flickr.com/photos/chadmiller/2740551034

    + Cameron NeylonCameron Neylon, 1 month ago

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