Dr. Dario Lijtmaer - Data Sharing/Collaboration and Publication using BOLD

Informatics Pre-Conference Workshop November 28, 2011Data Sharing/Collaboration and Publication using BOLD Darío LijtmaerMuseo Argentino de Ciencias Naturales “Bernardino Rivadavia”

Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project. Field work Molecular laboratory Taxonomy and voucher Data preparation analysis

Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project.2- Collaborators are often thousands of miles apart and interacting is notas easy as when two researchers work in the same institution. iBOL participating nations Distribution of CBOL institutions Localities of collection - ABBI

Common challenges in (collaborative) barcoding projects1- Collaborators have different areas of expertise and roles in the project.2- Collaborators are often thousands of miles apart and interacting is notas easy as when two researchers work in the same institution.The use of BOLD as a workbench to share data and interact can helpovercoming these challenges.

Barcoding the Birds of southern South AmericaObjective: to barcode the birds of the southern cone of South America MACN - Argentina UMSA - Bolivia CCDB - Canada

Barcoding the Birds of southern South America Field work in Tissue samples and Argentina vouchers at MACN and Bolivia UMSA and other Institutions Students Extraction and trained at amplification CCDB done at MACN Analysis Barcodes obtained performed together at CCDB

Collaboration and data sharing using BOLD: project users

Collaboration and data sharing using BOLD: project users- Users need to have a BOLD account for me to be able to give themaccess to the project.

Collaboration and data sharing using BOLD: project users- Users need to have a BOLD account for me to be able to give themaccess to the project.- There are different degrees of access for the users.

Collaboration and data sharing using BOLD: project users

Collaboration and data sharing using BOLD

Collaboration and data sharing using BOLDAll unexpected results are checked for possible contamination ormisidentifications using BOLD C. pyrrophia P. torquata Possible contamination S. similis S. coerulescens Possible misidentification

Publication using BOLD: sending barcode sequences to GenBank

Publication using BOLD: sending barcode sequences to GenBank GenBank update channel: in BOLD v3.0 (beta) the curation of specimen and sequence records is coordinated with GenBank. Changes and updates made in BOLD are automatically sent to the GenBank staff so that the info is also modified in GenBank.

Publication using BOLD: bibliography submission

Making your project public

Informatics Pre-Conference Workshop November 28, 2011Data Sharing/Collaboration and Publication using BOLD Thank you very much! Darío Lijtmaer Museo Argentino de Ciencias Naturales “Bernardino Rivadavia”

Dr. Dario Lijtmaer - Data Sharing/Collaboration and Publication using BOLD

by Consortium for the Barcode of Life (CBOL)

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Dr. Dario Lijtmaer - Data Sharing/Collaboration and Publication using BOLD Webinar Transcript