Your SlideShare is downloading. ×
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat
Upcoming SlideShare
Loading in...5
×

Thanks for flagging this SlideShare!

Oops! An error has occurred.

×
Saving this for later? Get the SlideShare app to save on your phone or tablet. Read anywhere, anytime – even offline.
Text the download link to your phone
Standard text messaging rates apply

BioCatalogue Presentation @ Enabling Systems Biology 2011, by Jiten Bhagat

483

Published on

Published in: Technology
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total Views
483
On Slideshare
0
From Embeds
0
Number of Embeds
0
Actions
Shares
0
Downloads
7
Comments
0
Likes
0
Embeds 0
No embeds

Report content
Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
No notes for slide
  • Stats, uptake, usage, since Launch
  • Make sure to explain why annotation is HARD
  • Infrastructure is not biology specific
  • Transcript

    • 1. JitenBhagatUniversity of Manchesterjiten.bhagat@manchester.ac.uk
      ENFIN Enabling Systems Biology 2011
      April 2011 | London, UK
      http://www.biocatalogue.org
    • 2. Agenda
      2
      Talk
      Intro
      Motivations
      Core Features
      Website Demo
      API
      Conclusions & Lessons Learned
      BONUS: iPad Demo
      by MannieTagarira
    • 3. The BioCatalogue
      3
      A public, centralised and curated registry of Life Science Web Services
      Allows anyone to register, discover and curate Web Services
      Community oriented, expert guidance
      Open content, open source, open platform
    • 4. Public launch at ISMB 2009 (June 09)
      4
    • 5. Reach
      ~18K unique visitors from over 130 countries
      5
    • 6. Who
      6
    • 7. Motivations (I)
      Guesstimate 3000+ publicly available online services in Life Sciences
      Where?
      can I find them? advertise them?
      What?
      do they do? can I use them?
      the cost? the licenses?
      How?
      do they work? up to date?
      Who?
      provides them? uses them?
      recommends them?
      7
    • 8. Motivations (II)
      Discover “Web Services are hard to find”
      Register “My Web Services are not visible”
      Annotate “Web Services are poorly described”
      Monitor “Web Services can be volatile”
      8
    • 9. Core Features
      Web Service registration
      Annotation
      descriptions, tags, categories, example data
      Keyword search
      Filtering
      By categories, providers, location, etc
      Monitoring
      Checking availability
      Test scripts
      9
    • 10. WEBSITE DEMO
      10
    • 11. API
      11
      Programmatic access to the BioCatalogue data and features
      Read & Write APIs
      Get index of services
      Search for services
      Filter services
      Drill down into the operations / endpoints of a service
      Register services
      Submit annotations
      Follows REST principles (XML & JSON outputs)
    • 12. NCRI ONIX Resource Catalogue
      12
    • 13. BioCatalogue in Taverna
      ISMB 10
      13
    • 14. Mass Curation Tool
      To aid the curation of Web Services via the use of spreadsheets
      Uses the BioCatalogue’s API
      Desktop application
      Browse/Search the BioCatalogue
      Export to an Excel Spreadsheet
      Annotate
      Submit annotations to the BioCatalogue
      14
    • 15. Mass Curation Tool
      15
      ISMB 10
    • 16. Apps - Coming Soon
      13th April 2011
      ENFIN Enabling Systems Biology 2011
      16
      iPad app (exclusive demo after this)
      Android app
      myExperiment integration
    • 17. EdUnify Registry
      ISMB 10
      17
      https://demo.edunify.pesc.org/ - Web Services for Education
      https://wiki.service.emory.edu/display/er/EdUnify+-+Useful+Links
    • 18. Some Lessons Learnt
      Describing Web Services is HARD
      We need to provide comprehensive APIs to the registry
      The SOAP/REST technical view over services is not enough
      Need a more functional / task-oriented view
      18
    • 19. How Can You Get Involved?
      Join in the curation of Web Services
      Describe how they work
      Provide examples
      Tag and categorise
      Join in the development of the software
      Build applications / integrate using the API
      Install your own BioCatalogue instance
      Provide feedback and suggestions
      19
    • 20. Acknowledgements
      Rodrigo Lopez
      Eric Nzuobontane
      Thomas Laurent
      Hamish McWilliams
      Carole Goble
      David De Roure
      JitenBhagat
      Katy Wolstencroft
      Franck Tanoh
      Steve Pettifer
      Robert Stevens
      20
      SergejsAleksejevs
      MannieTagarira
      JerzyOrlowski
    • 21.
    • 22. Thank You
      Over to Mannie…
      http://www.biocatalogue.org
      About Us - http://wiki.biocatalogue.org
      API Docs - http://apidocs.biocatalogue.org
      22
      Bhagat, J., Tanoh, F., Nzuobontane, E., Laurent, T., Orlowski, J., Roos, M., Wolstencroft, K., Aleksejevs, S., Stevens, R., Pettifer, S., Lopez, R., Goble, C.A.: BioCatalogue: a universal catalogue of web services for the life sciences, Nucl. Acids Res., 2010. doi:10.1093/nar/gkq394

    ×