Pandemic (H1N1) 2009 Virus
(Quadruple Reassortment)
“The 2009 Pandemic!”
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
Medical Management of Biological Casualties
8/2/2009 Revised and Modified 18/07/2009
Mission of Presentation
“To provide the people of Ireland a
universal teaching aid to respond to
Pandemic (H1N1) 2009 Virus”
8/2/2009 2
Virus Names Associated
Pandemic Influenza 2009
• Swine-Origin Influenza Virus (S-OIV) (US)
• North-American Influenza (Mexico) (WHO,OIE)
• Mexican Virus (Israel +South Korea)
• Mexican Flu (Netherlands)
• Swine Influenza A(H1N1)
• A(H1N1)
• H1N1 flu/new flu (Taiwan)
• Novel Influenza A(H1N1) (US/CDC)
• Nouvelle Grippe A (H1N1) Spanish
• A(H1N1)-SOIV (swine origin influenza virus)
• Influenza A(H1N1)swl (Swine like) (US/CDC)
• Influenza A(H1N1)swol (Swine origin like)
• Influenza A (H1N1)v (Virus) May 3 2009 (ECDC)
• Influenza A(H1N1) May 8 2009 (WHO)
• Influenza A(Pandemic H1N1) virus (WHO/NRVESS)
• Influenza A(H1N1)qr (Quadruple Reassortment) (IFPRI)
• July, 7, 2009, Update:
• Official name by (WHO, FAO and OIE): “Pandemic (H1N1) 2009”
? Official abbreviation :
– A(H1N1)v (ECDC)
– A(H1N1) 09 (AUS),
– PI/A(H1N1)v 09 or P(H1N1) 09 (IFPRI) based upon nomenclature!
Virus will be referred to at different points of Presentation!
8/2/2009 3
“Pandemic (H1N1) 2009”
Objectives
• Identify Who pandemic Phases In relation to too European and Irish Alert
Levels
• Identify Global Health Regulation for Ireland
• Biological triage
• Identify global and Irish Influenza Surveillance Systems
• Overview of new mitigation strategies from WHO,DOHC briefing!
• Pandemic Influenza A(H1N1) 09 Virus Worldwide Epidemiology
• Surveillance processes and systems
• Zoonosis of Swine Pandemic Influenza A(H1N1) 09 Virus Signs and
Symptom Post-mortem findings, Past Outbreaks and differences of Swine
Influenza Virus (SIV) and Pandemic Influenza A(H1N1) 09 Virus /Seasonal
Influenza Virus
• Influenza virus antigenic shift and drift
• Categorizing Influenza Virus “Viral Nomenclature
• Emergence of Some Influenza Viruses in Humans
• Swine Influenza (SIV) Reassortment
• Swine Influenza Host Range
• Pathogenesis of Triple Reassortment and Quadruple Reassortment
8/2/2009 4
“Pandemic (H1N1) 2009”
Objectives
• Containment and mitigation definition and strategies
• Public health “containment" and “mitigation”
management
• Reporting Pandemic Influenza A(H1N1) 09 Virus in
“containment” and “mitigation” phases
• Infection Control and Prevention for Health Care
Facilities
• Epidemiological Risk Factors Influenza A(H1N1)
• Specific Investigational Triggers confirmed Pandemic
Influenza A(H1N1) 09 Virus
• Irish resources for Pandemic Influenza A(H1N1) 09
Virus
• Pandemic Influenza A(H1N1) 09 Virus Transmission,
Personal Prevention, Human Signs and Symptoms,
High Risk Groups, Diagnosis, Case Definitions
8/2/2009 5
“Pandemic (H1N1) 2009”
Objectives Continued
• Recommended Initial PPE Protection Levels for all levels of
response
• Handling Human Remains (HHR)
• Pandemic Influenza A(H1N1) 09 Virus Antivirals Treatment
Schedule,Adverse Effects
• Special Considerations for Children
• Pregnancy
• Typical Antiviral Clinic Process Flow Chart
• Post Exposure Prophylaxis (PEP)
• Pandemic Influenza A(H1N1) 09 Virus Irelands Laboratories
Overview, Specimen Collection, Laboratory Precautions,
• Shipping Infectious Substances (WHO “E-tool” guidelines)
• Infection Control In Health Care Setting
• Point of Care Risk Assessment Tool for Pandemic (H1N1) 2009 Flu
Virus
• Environmental Waste
8/2/2009 6
“Pandemic (H1N1) 2009”
Objectives Continued
• Vaccine development process and timeline
• Antiviral treatments and considerations ,(PIEG) On
Antivirals Algorithms during “containment” and
“mitigation” phases
• School outbreaks and containment and mitigation
strategies
• Residential day camps recommendations for the
surveillance of Influenza-like illness
• Bioethics
• Infection Prevention and Control Guidance for the
Ambulance Service
• Pandemic Influenza A(H1N1) 09 Virus Business
Continuity with checklist
• Case Studies Spain. England, and Mexico “Estimated
Ratio”
• Closing Discussion
8/2/2009 7
World Health Organization (WHO)
Pandemic Phase Advisories
11 June 2009 Influenza pandemic alert raised to
Phase 6
The Director-General of WHO Dr Margarat Chan has
On April 27 2009 The World
therefore decided to raise the level of influenza
On April 29, the Emergency
Health Organisation raised its pandemic alert from phase 5 to phase 6. Committee had their third
pandemic alert level to 4,
verifying human-to-human
"The world is now at the start of the meeting, and decided to raise
the pandemic alert level to five,
swine flu, hours after the first
British cases of the disease were
2009 influenza pandemic," the second-highest level,
confirmed. April 28 2009
indicating that a pandemic is
WHO flu expert Keiji Fukuda "imminent," and that human-
pointed out that it is too late to to-human transmission cases
contain the swine flu have been recorded in multiple
"Containment is not a feasible countries.
operation. Countries should
now focus on mitigating the
effect of the virus,”
3 to 4 Phase 4 to 5 Phase
April 27 2009 April 29 2009
8/2/2009 8
Avian Influenza H5N1 Phase 1-3
World Health Organization (WHO)
Pandemic Phase Advisories Phase 6 Rationale
• World Health Organization has raise the H1N1 flu virus pandemic alert
level from Phase Five to Phase Six. In doing so the WHO underscored:
• The decision is based on the spread of the virus and not the severity of
illness it causes. The virus has caused sustained community level
outbreaks in more than three countries across two WHO regions
• In general, the “Pandemic (H1N1) 2009” flu virus continues to cause
moderate illness globally with most people affected recovering at home
without medical treatment.
• 88-98 % are mild cases and 1-2% are severe cases related to underlying co-
morbid conditions complicating the treatment regime
• For instance in Ireland most infections to date have been mild!
• Future severity assessments will reflect one or a combination of the
following factors:
– changes in the virus
– underlying vulnerabilities
– limitations in health system capacities
WHO Headquarters in Geneva
8/2/2009T 9
World Health Organization (WHO)
New Mitigation Strategy for Phase 6
(July, 7,2009 Update)
• Strategy to change from containment to
mitigation
• Public health intervention to clinical
intervention
• Universal contact tracing to specific
contact tracing
• Antiviral administration from local DPH to
influenza centres/pharmacies
• New mitigation resources will be available
soon from the World Health Organization!
– (Thursday, 16, July, 2009)
http://www.who.int/mediace
ntre/Pandemic_h1n1_presstr
anscript_2009_07_07.pdf
8/2/2009 10
International Health Regulations
• Following 2003 SARS, the World
Health Organization (WHO) revised
the International Health
Regulations
• IHR contains an operational
definition of a “public health
emergency of international
concern” that triggers increased
control responsibilities for nations
• 194 countries worldwide
8/2/2009 11
International Health
Regulations (IHR) 2005
• New influenza virus sub‐types and clusters of
unknown and unusual disease are notifiable to
WHO in accordance with the Annex 2 decision
instrument of the IHR (2005)
8/2/2009 12
Global Pandemic Curve
First confirmed
Case in Spain was
the catalyst in
WHO activating
Influenza Pandemic
Phase 5
Australia Phase 6
8/2/2009 13
MADRID – “Spain Became the First Country in
Europe” Pandemic (H1N1) 2009
• MADRID --In Catalonia Spain, officials confirmed the first
European case of an infection in a person who had not
(recently) travelled to Mexico, in a person whose girlfriend
had done so, the second WHO region to experience
transmission of this strain of H1N1
• As of June 15 2009 Europe reported its first death in Scotland
in a 38 year old pregnant women
– Had premature baby boy in June but the baby has died however he June 14 2009
tested negative for Influenza A(H1N1) First and second death
– 2nd death- They were an unnamed 73-year-who died on Saturday night in Europe!
after 15 days in intensive care
• As of June 27 2009, Europe has reported it 3rd death
– Girl aged 9 dies in Birmingham hospital
– As of June 30 2009, Europe has reported its 3rd Death June 27 2009
Third death in Europe!
• A 19-year-old girl died of the H1N1 influenza Tuesday in
Madrid
– The girl, of North African origin, who also suffered from asthma, was
28 weeks pregnant. Doctors performed a caesarean section on her on
Monday due to the seriousness of her condition June 30 2009
Fourth death in Europe!
• As of Aug, 1, 2009 40 deaths in Europe have occurred
– United Kingdom (30)
– Spain (7)
– Hungary (1)
– Belguim – 1 14
– France - 1
Who Pandemic Phases and
Recommended Actions
8/2/2009 15
Who Pandemic Phases and
Irelands Recommended Actions
8/2/2009 16
EU Alert Levels in WHO Phase 6
EU alert level Description
EU Alert Level One No confirmed human cases
infected with the pandemic virus
in any EU Member State
EU Alert Level Two One or more confirmed human
case(s) infected with the
pandemic virus in any EU
Member State
EU Alert Level Three A confirmed outbreak
(transmission) with the
pandemic virus in any EU
Member State
EU Alert Level Four Widespread transmission in EU
Member States
8/2/2009 17
Irish Alert Levels In WHO Phase 6
Irish Alert Level Description
Irish Alert Level 1 Cases only outside Ireland (in a
country or countries with or
without extensive Irish
travel/trade links
Irish Alert Level 2 New virus isolated in Ireland
June 11 2009
Irish Alert Level 3 Outbreak(s) in Ireland
June 28 2009
Irish Alert Level 4 Widespread activity in Ireland
July 28 2009
Currently in Ireland “Alert Level 4”
First Confirmed case
In Dublin Ireland
8/2/2009 April 3 2009 18
“Biological Triage” Mitigation
High Transmissibility
• Influenza Mitigation: Susceptible
• Identify & treat primary
infections Exposed
Infectious
• Preventative Goal:
• Prevent and delay secondary Removed
infections Vaccinated
Prevent and delay clustered
in-country transmissions
Keeping in mind the severity of
the influenza virus country by
New ECDC “containment vs delayed” article
country (High Transmissibility = Low or no containment
therefore “delay” transmissions in WHO phase 4-6 )
According to WHO: Influenza A(H1N1) Secondary attack rate of 22-33%
8/2/2009 20
compared to 5-15% for seasonal influenza
“Pandemic (H1N1) 2009”
Epidemiology
Five-year-old Edgar Hernandez, known as "patient zero" survived the
earliest documented case of swine flu. “April 2 2009”
8/2/2009 21
“Pandemic (H1N1) 2009”
Outbreak In Ireland as of Aug ,1, 2009
Country Laboratory confirmed In-country Deaths
cases of Pandemic Transmission
Influenza A(H1N1) 2009
Virus
Ireland 276 38 0
(Approx 500-1500 cases)
(April 30 2009 1stcase)
Northern 54+ NA 0
Influenza Surveillance in July ,28, 2009
Ireland ‐ Weekly Update Ireland (May 1 2009 1st case)
Influenza Week 30 2009 DOHC FAQ’s
(20th‐26thJuly 2009)
EU/EFTA 26,446+ 40
Non EU 157,898+ 1,207
Global # 184,435+ 1,247
HPSC: “From Thursday July 16th GPs are moving to treat only certain categories of patients suspected of having influenza A(H1N1)v.
GPs will decide, on the basis of a range of clinical and other features which patients need treatment. As most patients will have
relatively mild symptoms, they will not need any antiviral medication and will recover by staying at home (to prevent spreading
infection to others), drinking plenty of fluids and taking paracetamol regularly to relieve their symptoms.”
The HPSC received information from the Irish College of General Practitioners (ICGP) that 37 people per 100,000
are contracting the virus each week, director Dr Darina O’Flanagan said on RTE’s Morning Ireland.
ECDC: The number of confirmed cases reported is based on laboratory test results, except for the US. Depending on the national
laboratory testing policies, the actual number of cases by country may therefore be higher. Several countries have now
8/2/2009 announced concentrating on mitigation measures and this usually implies focused laboratory testing. For these countries, the 22
reported numbers of cases presented in this report will severely underestimate the true incidence in the country and will not be
comparable to countries still recommending laboratory tests of all suspected influenza cases.
“Pandemic (H1N1) 2009”
Infection Weekly Surveillance Report
Number of confirmed cases of Pandemic Influenza A(H1N1) 09 by week number, in
Ireland by as of July, 29, 2009 (“Week 29” and “Total” updated daily)
Influenza Surveillance Week Confirmed Cases
Number
The HPSC received information 17 1
from the Irish College of General 18 0
Practitioners (ICGP) that 37 people 19 0
per 100,000 are contracting the 20 0
virus each week , director Dr
21 2
Darina O’Flanagan said on RTE’s
22 9
Morning Ireland
Yesterday, the Department said 23 1
that 500 people had been clinically 24 4
diagnosed with the virus in the last 25 16
week ! 26 35
27 51
28 86
29 79+
Total 276+
8/2/2009 23
Surveillance System:
EU Surveillance Networks
• Enter-net
• EuroHIV
Eurosurveillance
• European Surveillance System (TESSy)
• EuroTB
• European Antimicrobial Resistance Surveillance System (EARSS)
• European Influenza Surveillance Scheme (EISS)
• European Programme for Intervention Epidemiology Training (EPIET)
• European Scientific Working Group on Influenza (ESWI)
• European Surveillance of STIs (ESSTI)
• European Working Group for Legionella Infections (EWGLI)
• FluNet Global Salm-Surv (GSS)
• International Network of Paediatric Surveillance Units
8/2/2009 24
International Surveillance System
• International • Europe
• – The European Union
United Kingdom – EU Public Health
Eurosurveillance
British Paediatric Surveillance Unit (BPSU) – Health and Consumer Protection DG
• Communicable Disease Surveillance – World Health Organisation: Europe
Centre, (NI)
• Department of Health (UK)
• Worldwide
– Australia: Communicable Diseases
• Department of Health, Social Services and
Australia
Public Safety (NI)
– Australia: Immunise Australia
• Faculty of Public Health Medicine (UK)
Programme
• Health Promotion Agency (NI)
– Canada: Health Canada
• Scottish Executive Health Department
– New Zealand: Ministry of Health,
• Welsh Assembly Government New Zealand
• – USA: Centers for Disease Control
– World Health Organisation:
8/2/2009 International 25
•
Surveillance System:
National Surveillance Institutes in Europe
• Belgium: l'Institut scientifique de Santé • Netherlands: Rijksinstituut voor
Publique Volksgezondheid en Milieu (RIVM)
• Norway: Folkehelseinstituttet
• Czech Republic: Centrum Epidemiologie a
• Poland: Panstwowy Zaklad Higieny (PZH)
Mikrobiologie (CEM)
• Portugal: Direcção-Geral da Saúde
• Denmark: Statens Serum Institut (SSI) • Slovak Republic: Úrad Verejného
• Estonia: Tervisekaitseinspektsioon Zdravotnictva (UVZ)
• Finland: Kansanterveyslaitos (KTL) • Slovenia: Inštitut za varovanje zdravja (IVZ)
• Spain: Instituto de Salud Carlos III
• France: Institut de Veille Sanitaire (InVS)
• Sweden: Smittskyddsinstitutet (SMI)
• Germany: Robert Koch Institut (RKI) • UK (England & Wales): Health Protection
• Greece: Hellenic Center for Infectious Agency (HPA)
Diseases Control (KEEL) • UK (Northern Ireland): Communicable
Disease Surveillance Centre (CDSC)
• Hungary: Országos Epidemiológiai Központ
• UK (Scotland): Health Protection Scotland
(OEK) (HPS)
• Iceland: Landlæknir • U.S. Department of Health and Human
• Italy: Istituto Superiore di Sanità (ISS) Services (DHHS)
• Latvia: Sabiedribas veselibas agentura
(SVA)
• Luxembourg: Direction de la Sant
8/2/2009 26
Pandemic Influenza A(H1N1)v 09
Surveillance Links
• Further information: • International
http://www.hse.ie/eng/ • CDC, US
http://www.dohc.ie • PHAC
http://www.who.int/en
http://www.cdc.gov/swineflu/ • PAHO
http://ecdc.europa.eu/en/ • ECDC
• http://www.nathnac.org/pro/swineflu.ht • HPA, UK
m • WHO
• Links
• Irish • Further Irish Sites of
• Health Service Executive (HSE) Interest
• Department of Health and Children • Central Statistics Office
• Department of Foreign Affairs • Faculty of Public Health
• Department of Agriculture Medicine, RCPI
• Irish College of General Practitioners • Health Research Board
(ICGP) • Food Safety Promotion
Board
• CIDR (must have login)
8/2/2009 27
Pandemic (H1N1) 2009
Surveillance in Ireland
• Reporting of clinical data by sentinel GPs
• Hospital Surveillance
• Enhanced surveillance
• Surveillance of absenteeism rates in
sentinel schools
• Mortality Surveillance
• Regional influenza activity by HSE area
• Surveillance in Containment Phase:
– Pandemic Influenza A(H1N1) 09 Virus Pandemic Influenza Influenza Surveillance
Weekly Surveillance Report A(H1N1) 09 Virus in Ireland July 20-26
Infection 2009
Weekly Surveillance http://www.hpsc.ie/hpsc/A-
• Surveillance in Mitigation phase: Report Z/EmergencyPlanning/AvianPa
ndemicInfluenza/SwineInfluenz
As of July, 18, 2009
• Weekly Influenza surveillance Report a/Surveillance%20Reports/File,
3749,en.pdf
– Published every Thursday
– Epi-Insight Monthly
8/2/2009 28
Pandemic (H1N1) 2009 Virus Surveillance in Ireland
• Since the public health emergency was declared by WHO, HPSC and the HSE have implemented a number of surveillance initiatives to monitor the situation including:
• Enhanced influenza A(H1N1) case based reporting on the Computerised Infectious Disease Reporting system (CIDR)
• Contact tracing surveillance for contacts of influenza A(H1N1) cases
• Expanded outbreak reporting of influenza and influenza-like illness on CIDR
• An interim protocol on outbreak/cluster surveillance to detect early cases of influenza A(H1N1)
• A protocol for surveillance of influenza-like illness in healthcare workers during Pandemic Phase 5.
• Increased virological surveillance by the sentinel GP influenza surveillance system and recruitment of additional sentinel GPs
• Expanded sentinel hospital influenza surveillance to capture information on the age breakdown of respiratory admissions Cited from Epi-insight
• Sentinel paediatric hospital influenza surveillance systems have been implemented at two sites
• Work is ongoing in the establishment of pilot sites for the sentinel surveillance of persons with influenza A(H1N1) who are admitted to intensive care units
• Mortality surveillance has also been augmented with weekly monitoring of all cause mortality and deaths from pneumonia and influenza. HPSC will participate in a European mortality surveillance project (Euro
MoMo) from early June 2009.
Computerised Infectious Disease Reporting (CIDR) Adapted from Dr Jaon O'Donnell PTT From HPSC
ICGP NRVL DPH/MOH Other
Sentinel GP ILI consultations Hospital admissions GRO Mortality data
Sentinel specimens School absenteeism
HSE Influenza
antiviral/vaccine uptake
Non-Sentinel specimens Enhanced influenza
surveillance
GP Co-Ops
ILI (Cluster) outbreaks
Contact tracing International EISS, HPA, etc
Influenza notification
Health Protection Surveillance Centre (HPSC)
European Influenza WHO Global Outbreak and Department of Public Health Weekly surveillance report
Surveillance System (EISS)
8/2/2009 Alert Response Network and Children 29
(GOARN)
Influenza
Irelands Surveillance Systems
• The role of HPSC as influenza surveillance co-ordinator is to:
• Maintain and develop the current sentinel influenza
surveillance network
• Oversee enhancements as outlined e.g. year round
surveillance, surveillance of hospitalised cases
• Promote year round surveillance of influenza
• Maintain close working relationship with the National Virus
Reference Laboratory (NVRL) and the Irish College of General
Practitioners (ICGP)
8/2/2009 30
Pandemic (H1N1) 2009
Irelands Surveillance Systems
• World Health Organization “GOARN”
• European Influenza Surveillance System (EISS)
• Irish
• The National Influenza Surveillance System
• 1. Reporting of clinical data/influenza-like illness (ILI) by sentinel GPs
• 2. Virological reporting (NVRL)
• 3. Hospital surveillance comprising weekly data on total admissions, total
Emergency Department (A&E) admissions and total respiratory admissions
(upper respiratory tract infection, lower respiratory tract infection,
pneumonia, asthma, chronic bronchitis, and exacerbations of chronic
obstructive pulmonary disease) from sentinel hospitals
• 4. Surveillance of absenteeism rates in sentinel schools
• 5. Reports on outbreaks due to influenza or ILI
• 6. Mortality data (weekly review of all cause and pneumonia and influenza
registered deaths (uncoded)) from the General Registrar’s Office (GRO)
• 7. Weekly regional influenza indices based on clinical activity, virological
activity and outbreak activity. This is defined as no report, no activity,
sporadic activity, localised activity, and widespread activity
– Computerised Infectious Disease Reporting (CIDR)
– Hot Line:
• The Flu Information Line is available 24 hours a day and is your primary source of
information on Influenza A(H1N1).
• Freephone: 1800 94 11 00
8/2/2009 31
The statutory requirement to notify all cases of
Pandemic (H1N1) 2009
to the regional Director of Public Health/Medical
Officer of Health (DPH/MOH)
Under the Infectious Diseases (Amendment)
(No.3) Regulations 2003 (SI No.707 of 2003)
laboratory and clinical notification of swine
influenza A (H1N1) is mandatory
8/2/2009 33
WHO “Pandemic Influenza A(H1N1) 09 Virus”
Confirmed Cases and Deaths
• As of 17:00 GMT, July , 6, 2009, 137 countries have officially reported 94,512
cases of Pandemic (H1N1) 2009 virus infection, including 429 deaths
8/2/2009 “WHO” Last report due to new mitigation strategy! 34
“Pandemic (H1N1) 2009”
as of Aug, 1, 2009
Pandemic Influenza Confirmed Cases of Circulating Avian
A(H1N1) 09 Pandemic Influenza Influenza H5N1 in
A(H1N1) 09 Humans
(Deaths)
United States 43,771 (353) No activity
Mexico 16,442 (146) No Activity
Australia 21,752 (62) Sporadic
Chile 11,860 (87) No activity
Canada 10,449 (59) No activity
England 11,864 (30) No activity
Thailand 8,879 (65) Sporadic
Philippines 3,307 (80) Sporadic
Argentina 3,056 (165) No activity
Japan 5,022 (0) Sporadic
Ireland 276+ (0) No activity
8/2/2009 (approx 500-1500) 36
ECDC Reported cumulative number
of confirmed cases and of in-
country transmission of influenza
A(H1N1)v as of 1, Aug, 2009, 17:00
hours (CEST) in the EU and EFTA
countries
Several countries have now announced concentrating on
mitigation measures and this usually implies focused
laboratory testing. For these countries, the reported
numbers of cases presented in this report will severely
underestimate the true incidence in the country and will
not be comparable to countries still recommending
laboratory tests of all suspected influenza cases.
8/2/2009 37
Influenza A(H1N1)v
Outside (EU) and EFTA ECDC Tables Aug 1 2009
8/2/2009 38
Distribution of Confirmed Cases of influenza A(H1N1)v Virus
Infection in EU and EFTA countries,
• Distribution of confirmed cases of influenza A(H1N1)v infection by week of
notification, EU and EFTA countries, 29 April to 1 August 2009T
8/2/2009 39
ECDC June 3rd 2009
Cumulative Epidemic Curve:
ECDC SITUATION REPORT
Influenza A(H1N1) infection
Update 03 June 2009, 17:00 hours CEST
“The trend analysis using a semi-logarithmic scale, shows a rapid increase in the number of cases in the Americas (AMRO) as well as in the European
region (EURO) since end of April 2009. The increase in the Western Pacific WHO Region (WPRO) was initially less significant but showed a sharp increase
in the third week of May, in relation with cases reported from Japan. The trend in the WPRO Region suggests faster increase in the reported cases in the
past 8 days, when compared with the AMRO and EURO Regions, due to the rapid spread of the infection in Australia. The South East Asian WHO Region
(SEARO) reported the first cases three weeks after the alert of WHO on 25 April and the Eastern Mediterranean Region (EMRO, which is including some
countries of the African continent) four weeks after the 25 April. The trend in the number of reported cases from SEARO seems to be similar to the one
from WPRO during the last week.”
July, 29, 2009
Wikipedia: A semi-
logarithmic chart of
laboratory-confirmed
A(H1N1) influenza
cases by date
according to WHO
reports
8/2/2009 40
“Pandemic (H1N1) 2009”
Outbreak In The Republic of Ireland 2009
• Map of influenza activity by HSE area as of July, 26, 2009 (n=217)
Mortality - 0
HSE-North West - 6 HSE-North East- 26
HSE-Midlands - 8
HSE-West- 21
HSE-Midlands West- 17
HSE-South- 19 HSE-South East- 18 HSE-East - 102
“Pandemic (H1N1) 2009”
Americas Outbreak 2009
• As of July 22, 2009, a total of 88,408 confirmed cases have been notified in 34 countries in the Americas Region. Grenada
remains the only country that has not notified confirmed cases of the pandemic (H1N1) 2009 virus. Also, a total of 737 deaths
have been notified, from the confirmed cases, in 20 countries of the Region.
July , 17, 2009
July, 22, 2009
PAHO: Last report July ,17, 2009.
8/2/2009 Widespread Activity 42
“Pandemic (H1N1) 2009”
Outbreak In The United States 2009
The date of the onset of symptoms of the first
confirmed case was 28 March 2009 in the United
States.
U.S. Human Cases of H1N1 Flu Infection
July 29 2009 US Swine Flu Summary:
43,771 confirmed cases (estimated 250,000)
First Death Inside the US April 27, 2009
First Death of US Citizen May 5, 2009
As of July 31, 2009, 5,514 hospitalizations and 353 deaths
• 7 deaths in individuals 0-4 years
• 56 deaths in individuals 5-24 years
• 142 deaths in adults 25-49 years
• 96 deaths in adults 50-64 years,
• 29 deaths in adults age 65 and older
• 23 deaths with unknown age
CDC is reporting every Fridays
8/2/2009 43
“Pandemic (H1N1) 2009”
United States Outbreak
• Influenza Viruses Isolated by
Week 29 (July 19-25, 2009)
Week ending June 27 2009
8/2/2009 44
Pandemic Influenza A(H1N1) 09 Virus
México Outbreak 2009 As of Aug, 1, 2009 (PAHO)
Aguascalientes - 94 Hidalgo - 242 Morelos - 95 Querétaro - 141
Baja California - 79 Jalisco - 333 Nayarit - 73 Quintana Roo - 57
Baja California Sur - 8 As of July ,30, 2009 San Luis Potosí - 372
Laboratory confirmed cases - 16,442
Deaths - 146
Campeche- 38 Sinaloa - 8
Chiapas - 55 Sonora - 66
Chihuahua - 58 Tabasco - 246
Tamaulipas - 68
Coahuila - 2
Tlaxcala - 69
Colima - 26
Veracruz - 321
Durango- 19 Federal District -1824 Nuevo León- 64
Yucatan - 97
Guanajuato - 79
Mexico State - 280 Oaxaca - 79
Guerrero - 214 Zacatecas - 237
Michoacán - 156 Puebla - 59
8/2/2009 45
Individual regions #’s are days behind
“Pandemic (H1N1) 2009”
Outbreak in Canada
• As of 30 July, 2009, a total of 10,156+ laboratory-confirmed cases of
Pandemic (H1N1) 2009, including 1,271hospitalizations and 59 deaths,
have been reported in Canada from all provinces and territories.
As of today, Canada will no longer be releasing individual confirmed
cases of H1N1 flu virus three times weekly. Instead, the existing
FluWatch surveillance program will be enhanced in order to give a
more robust analysis of the national picture in Canada
Yukon - 1 Nunavut – 405
Death - 1
North West Territories - 14
Newfoundland - 44
British Columbia – 382
Deaths - 2
Prince Edward Island - 5
Alberta- 1,348
Death - 5 Nova Scotia – 330
Saskatchewan – 859 Death - 1
Deaths - 4 New Brunswick - 42
Manitoba - 831
Deaths - 7 Ontario – 3,636 Quebec- 2,259
Deaths - 19 Deaths - 20
8/2/2009 Quebec searches systematically for influenza H1N1 among all ILI 46
hospitalized patients which may explain high numbers
“Pandemic (H1N1) 2009”
United Kingdom Outbreak
According to ECDC 11,864 Confirmed Cases and 30 deaths as of Aug, 1, 2009
As of Aug, 1,2009
Clinical cases approx 110,000+ in week 30 Scotland- 1217
HPA modelling range 60,000,160,000 Death - 3
793 hospitalizations and 79 ICU cases
Northeast - 55
Northern Ireland - 34
Yorkshire and Humberside – 143
New reporting system in UK as of Deaths - 2
July, 2,2009
North West - 97 East Midlands - 147
East of England - 411
Wales - 34
London – 1,939
West Midlands – 2,582
Death - 10
Death - 1
South West - 198 South East - 598
8/2/2009 47
Map will not be updated after July 3, 2009 only narrative update!
“Pandemic (H1N1) 2009”
Australia Outbreak 2009
As of Aug, 1, 2009 Week 30 21,752+ Laboratory confirmed
cases and 62 deaths
Northern Territory – 799+ Hospitalizations 2,394
Death - 3 410 in hospital
Queensland – 2,987+
110 ICU
Death - 7
Western Australia – 1,882+
Death - 1
New South Wales – 3,648+
Deaths - 17
First case: 9 May 2009
First death :
Australian Capital
Territory – 598+
South Australia – 1,722+
Death - 6
Tasmania – 225+
Victoria – 2,402+ Death - 3
Death -16
8/2/2009 Reporting daily! 48
“Pandemic (H1N1) 2009”
Japan Outbreak 2009
• Japan: As of Aug, 1 2009, Japan reports 5,022
confirmed cases (up 561 since July 22nd) of
Pandemic (H1N1) 2009 and no deaths.
May 21 2009 Japan notified 67 new
confirmed cases in past 24 hours,
representing a 32% increase in cases
according to ECDC (n-532)
8/2/2009 49
“Pandemic (H1N1) 2009”
Spain Outbreak 2009
As of Aug,1 , 2009, a total of 1538 laboratory-confirmed cases and 127 In-
La Rioja country transmissions of Pandemic Influenza A(H1N1) 09 flu virus have been
reported and 7deaths
Asturias Cantabria Pais Vasco
Galicia Navarre
Castile and Leon Aragon
Community of Madrid Catalonia
Extremadura Castile-La Manchu
Balearic islands
Still updating regions on next report
Valencia Community
Region of Murcia
Canary Islanders Melilla
Andalusia
8/2/2009 50
Estimates of the Basic Reproductive
Rate (R0)
• There have already been several estimates of the basic reproductive
rate/ratio (R0) which all lie between 1 and 2; the range 1.4 to 1.9
being most probable
• Internationally as of July 29 2009 the (R0) Rate is 1.5
• The basic reproduction number is the mean number of secondary
cases a typical single infected case will cause in a population with
no immunity to the disease in the absence of interventions to
control the infection.
• It is often denoted (R0) . When (R0) < 1 the infection will die out in
the long run (provided infection rates are constant); but if (R0) > 1
the infection will be able to spread in a population
• See case study
“How to they Do it”
Pandemic (H1N1) 2009 Virus Estimates of the Basic Reproductive Rate
in Mexico”
8/2/2009 51
Zoonosis
Swine Influenza Virus (SIV)
“Zoonotic diseases are those diseases
transmitted between animals and people
and thus compromising public health as well
as endangering livelihoods by affecting their
livestock.”
8/2/2009 52
Global Early Warning System for Major Animal
Diseases, including Zoonoses (GLEWS)
• The Global Early Warning System for Major Animal
Diseases, including Zoonoses (GLEWS) is a joint FAO, World
Organisation for Animal Health (OIE) and WHO initiative to
improve the early warning capacity to animal disease
threats for the benefit of the international community
• Certain animal health events with potential public health
implications are included in the scope of the International
Health Regulations (2005) (IHR(2005))
• Intersectoral collaboration, including between the
veterinary, food safety and public health sectors is needed
to effectively address the prevention of zoonotic diseases
8/2/2009 53
(GLEWS)
Zoonotic and Non-Zoonotic Diseases
• Zoonotic • Non zoonotic
• Anthrax • African Swine Fever (ASF)
• Bovine Spongiform Encephalopathy (BSE) • Classical Swine Fever (CSF)
• Brucellosis (B. melitensis) • Contagious Bovine Pleuropneumonia (CBPP)*
• Crimean Congo Hemorrhagic Fever • Foot and Mouth Disease (FMD)*
• Ebola Virus • Peste des Petits Ruminants (PPR)
• Foodborne diseases • Rinderpest – Stomatitis/Enteritis
• Highly Pathogenic Avian Influenza (HPAI)
• Japanese Encephalitis
• Marburg Hemorrhagic Fever
• New World Screwworm
• Nipah Virus
• Old World Screwworm WHO States :
• Q Fever GLEWS is a joint system that builds on the added value of
• Rabies combining and coordinating the alert mechanisms of FAO,
• Rift Valley Fever* (RVF) OIE and WHO for the international community and
stakeholders to assist in prediction, prevention and control of
• Sheep Pox*/Goat Pox
animal disease threats, including zoonoses, through sharing
• Tularemia
of information, epidemiological analysis and contribute to
• Venezuelan Equine Encephalomyelitis joint field missions to assess and control the outbreak.
• West Nile Virus
8/2/2009 54
Irelands Governmental
Lead Agencies, Groups and Committees
Emergency/Incident Type Lead Lead Response Principal Other Potential Remarks
Government Agency as per Support Support Roles
Department Framework Role
Animal Infectious Diseases DAFF DF (DOD) Local Authorities HSE role relates
Diseases (Animal) HSE (DEHLG) to zoonotic
AGS (DJELR) diseases;
DFA infectious animal
CD (DOD) diseases with a
DTRANS human health
(IRCG/MSO/Shipping) dimension
DAST
• Strategic Emergency Planning Guidance – Lead, Principal and Other Support Roles:
• DAFF (Department of Agriculture Fisheries & Food)
• DEHLG (Department of the Environment Heritage & Local Government)
• DOD (Department of Defence)
• HSE (Health Service Executive)
• DTRANS (Department of Transport)
• IRCG (Irish Coast Guard)
• MSO (Marine Service Office)DAST (Department of Arts, Sport & Tourism)
8/2/2009 55
Swine Influenza (SIV) Outbreak History
Year History of Swine Influenza
1918 Swine influenza H1N1 described in north central USA, Hungary, and China. May have been cause of human
pandemic , which resulted in 20-40 million human deaths
1930 Shope isolated influenza virus from pigs
The prototype classic swine influenza H1N1 strain (A/Swine/ Iowa/30) transmitted experimentally to pigs
1941 Recognised in Europe and disappeared
1970 Transmission of human H3N2 virus to pigs. Avian like H3N2 in pigs in Asia
1976 United Sates/New Jersey Virus enzootic to US swine herds since or before 1930 – One Adult with Severe Pneumonia
1979 Introduction of whole H1N1 virus from birds to pigs.
Antigenically distinguishable from classical strains
Still circulating today (2002)
1984 Reassortment between human H3N2 and avian H1N1 in swine resulting in reassortant H3N2 virus with avian internal gene segments
H3N2 strains first associated with respiratory epizootics
Still circulating today(2002)
1986 Classical H1N1 reappears in UK, similar to classical H1N1 in continental Europe
1987 Reassortant H3N2 associated with respiratory epizootics in UK Related to A/Port Chalmers/73 (H3N2)
1989 Avian like swine H1N1 is dominant and widespread in Europe
1992-1993 Avian like H1N1 strains widespread in UK
1993 Infection of children with reassortant H3N2 virus from pigs and isolation of avian like swine H1N1 virus from a pneumonia patient in the Netherlands
1994 H1N2 first isolated in pigs in UK, and later also in Belgium. Human avian reassortant virus
1992-1998 H3N1 (H3 human, N1 swine) and H1N7 (H1 human, N7 equine) also occurred in swine in the UK but failed to spread
1998 H9N2 in pigs and humans in Asia
Apparently an avian virus that has adapted to pigs
1998 For the first time, H3N2 viruses cause severe disease in N. America. Viruses are triple (avian human classical swine) reassortants, distinct from earlier strains
and European strains
H1N2 identical to H3N2, but with H1HA from classical swine H1N1, also isolated
1999 Single case of isolation of avian H4N6 from pigs with pneumonia in Canada
2002 Current situation in Europe: avian like H1N1, and reassortant human like H3N2 and H1N2. In North America:
classical swine H1N1, triple reassortant H3N2
2005-2009 11 sporadic cases of infection in humans with triple-reassortant swine influenza A H1 (See Genetic Components of Triple-Reassortant Swine Influenza A (H1)
2009 Human-to-Pig Transmission of the Novel H1N1 Strain influenza virus in a swine herd in Alberta
Saskatchewan, Canada . Human to pig and pig to human transmission?
A strain of swine influenza virus was detected in two workers on a pig farm
Quebec finds pandemic H1N1 in a pig herd: An isolated case of the pandemic strain of H1N1 influenza has been confirmed in a Quebec pig herd that has since
completely recovered. No other case has been reported on any other pig farm in Quebec and there have been no human cases related to this situation. It is not
known how the pig caught the virus.
56
Swine Influenza A (Hsw1N1)
Past Outbreak in United States
• 1976 U.S. outbreak
• In early 1976, the novel A/New Jersey/76 (Hsw1N1)
influenza virus caused severe respiratory illness in 13
soldiers with 1 death at Fort Dix, New Jersey
President Ford
A/Victoria/75 (H3N2) spread simultaneously, also
receives swine
caused illness, and persisted until March
flu vaccination
• 230 soldiers were infected with the A/New Jersey virus
• Vaccine Controversy;
• 20-40 million vaccinated in US
– Overall, there were about 500 cases of Guillain-Barré syndrome
(GBS), resulting in death from severe pulmonary complications for 25
people, according to Dr. P. Haber
– “Nachamkin et al (2008) found that inoculation of the 1976 swine flu
vaccine, as well as the 1991-1992 and 2004-2005 influenza vaccines, Video from 1976
into mice prompted production of antibodies to antiganglioside (anti- Swine Influenza
GM1), which are associated with the development of GBS. They
proposed that further research regarding influenza vaccine Outbreak
components is warranted to determine how these components elicit
8/2/2009 antiganglioside effects” (Source E-medicne) 57
Genetic Components of Triple-Reassortant Swine Influenza A (H1)
• Triple-Reassortant Swine Influenza A (H1)
Viruses Isolated from 11 Patients between December 2005 and February 2009 in
the United States
Triple-Reassortment Swine H1N1 Triple-Reassorment Swine
Influenza Virus H1N2 Influenza Virus
(Pts 1-6 and 8-11) (Pt 7 2009)
Note Pt 8 visited a Pig Fair
(genetic ressortment H1N2)
PB2 PB2
PB1 PB1
PA PA
HA HA
NP NP
NA NA
M M
NS NS
http://content.nejm.
org/cgi/reprint/NEJM
oa0903812.pdf
Triple -Reassortment
Classical swine, North American Lineage
Avian, North American Lineage
Human (Seasonal )H3N2
8/2/2009 Human (Seasonal )H1N1
58
Zoonosis
Swine Influenza Virus (SIV)
• Two types of virus have been isolated in Ireland :
1. H1N1 was isolated for the first time in November
1991
– The H1N1 isolated in Ireland, is different from the
strains circulating in Europe and elsewhere, and
probably represents a separate introduction of an avian
strain into Irish pigs. It is serologically related to
Weybridge 79 and OMS/2899/82
2. H3N2 was isolated for the first time in June 1993
– The H3N2 virus isolated is serologically related to
OMS/3633/84
• Existence of H1N2 in Irish pigs has so far been scantly
detected by % of seropositive sows (HI), 2002-03 *SIV
subtype isolated in Ireland revealed the following:
– Ireland
– H1N1: 17.8* The novel A/H1N1 Influenza virus at the interface
between humans and animals
Swine influenza virus. Colorized
–
transmission electron micrograph
H3N2: 4.2* What needs to be done in Europe?
Brussels, 9 June 2009
(37,800X) of the A/New Jersey/76
(Hsw1N1) virus under plate magnification.
Image taken during the virus' first
– H1N2: 0.6
developmental passage through a chicken
egg. Courtesy of the CDC/Dr. E. Palmer;
R.E. Bates.
8/2/2009 59
Swine Influenza in Pigs
Virus Subtypes
• Influenza A was first recognized as a clinical illness in pigs in 1918,
which coincided with the 1918-1919 influenza pandemic in humans
• H1N1 influenza A virus was first isolated from pigs in the United
States in 1930.
• H1N2 viruses that resulted from reassortant between the triple
reassortant H3N2 viruses and classical H1N1 swine viruses have been
isolated occasionally in the United States.
• Avian H4N6 virus was recognized in pigs in Canada in 1999, but
spread beyond the original farm of detection was not identified.
• A novel H3N1 influenza virus was isolated from pigs in the United
States in the mid 2000s; this virus may have risen from reassortment
of an H3N2 turkey isolate, a human H1N1 isolate, and currently
circulating swine influenza viruses
8/2/2009 60
Swine Influenza (SIV) Signs and
Symptoms In Swine
• Symptoms of infected pigs include:
– Fever (102-106°F)
– Depression
– Coughing (barking)
– Sneezing
– Difficulty breathing
– Red or inflamed eyes
– Lack of appetite
– Discharge from the nose or eyes
– Reduced fertility or abortion (boars and sows)
– Mortality up to 15%
8/2/2009 61
Swine Influenza (SIV)
Differential Diagnosis In Swine
• The following diseases must be considered in
the differential diagnosis:
– Aujeszky's disease
– Atrophic rhinitis
– Enzootic (mycoplasmal) pneumonia
– Actinobacillus pleuropneumoniae
• (serotype 1-2-4-7-9-11, serotype 2, serotype 1-9-11 or
serotype 4-7)
– Bacterial pneumonia due to Pasteurella or
Haemophilus spp.
8/2/2009 62
Swine Influenza (SIV)
Porcine Diagnostic
• Veterinary diagnostic kits:
• Influenza A Antibody Competition ELISA kit
• Influenza A Antigen Capture Kit
• The kit detects antibodies directed against the A
nucleoprotein in a wide range of species (avian,
porcine, equine), including wild and zoo animals.
8/2/2009 63
Swine Influenza (SIV)
Post-mortem findings In Swine
• Post-mortem findings include:
• The lesions are confined to the respiratory system and are not very specific.
• Hyperaemic of the mucosa of the respiratory tract
• Excess production of mucus
• Atelectasis and emphysema of the cardiac and apical lobes of the lungs,
• Enlarged bronchial and mediastinal lymph nodes
• In fatal cases there may be an acute interstitial pneumonia
“An overview on swine
influenza” ptt Pictures
Normal Normal Normal Lungs
Infiltration of Desquamation of Abnormal Lungs
neutrophils epithelial cells Normal Lungs
8/2/2009 64
Swine Influenza (SIV)
Examples of Vaccines For Porcine!
• Schering-Plough Animal Health Corporation: MaxiVac Excells
• Novartis : PneumoSTAR® SIV Swine Vaccine
• Pfizer Animal Health: FluSure vaccine
8/2/2009 65
Swine Influenza (SIV)
European Vaccine List
Name Virus strains Type Antigenic dose
(company)
Gripovac A/New Jersey/8/76 (H1N1) split H1N1 : ≥ 1,7 HI units
(Merial) A/Port Chalmers/1/73 (H3N2) H3N2 : ≥ 2,2 HI units
Suvaxyn Flu A/sw/Netherlands/25/80 (H1N1) whole virus H1N1 : 4 μg HA
(Fort Dodge) A/Port Chalmers/1/73 (H3N2) H3N2 : 4 μg HA
Gripork A/sw/Ollost/84 (H1N1) whole virus H1N1 : 3 x 107 EID50
H3N2 : 2,5 x 107 EID50
(Hipra) A/Port Chalmers/1/73 (H3N2)
Respiporc Flu A/sw/Belgium/230/92 (H1N1) whole virus H1N1 : ≥ 256 HA units
H3N2 : ≥ 256 HA units
(IDT) A/sw/Belgium/220/92 (H3N2)
Respiporc Flu3 A/sw/Haselunne/2617/03 (H1N1) whole virus H1N1 : ≥107 TCID50
A/sw/Bakum/1769/03 (H3N2)
(IDT) A/sw/Bakum/1832/00 (H1N2) H3N2 : ≥107 TCID50
H1N2 : ≥107 TCID50
Slide List From Prof. Kristien Van Reeth Laboratory of Virology, Faculty of
Veterinary Medicine “An overview on swine influenza” ptt
8/2/2009 66
National Biosecurity
Importation of Swine In Ireland Directives
• Swine- are prohibited to be
imported from non-EU
countries, except in compliance
with Directive 72/462/EEC.
• Licence issued in accordance
with the Importation of
Livestock Orders, 1970 to 1992
(S.I. No. 296 of 1970 and S.I.
298 of 1992).
8/2/2009 67
“Pandemic (H1N1) 2009”
Food Safety of Pork “INFOSAN”
• Paris, 7 May 2009
• Joint FAO/WHO/OIE Statement on influenza A(H1N1)
and the safety of pork
• Influenza viruses are not known to be transmissible
to people through eating processed pork or other
food products derived from pigs.
• Heat treatments commonly used in cooking meat (e.g.
70°C/160°F core temperature) will readily inactivate any
viruses potentially present in raw meat products.
Authorities and consumers should ensure that meat from sick pigs or pigs
found dead are not processed or used for human consumption under any
8/2/2009 circumstances.! 68
“Pandemic (H1N1) 2009” Prevention
Department of Agriculture and Food and Fisheries (DAFF)
• Agriculture and Food and fisheries (DAFF) will
institute biosecurity measures
• These control measures focus on animal health issues
and aim to prevent any further spread of the disease
among animals
8/2/2009 69
Irish BIosecurity Measures
For Pig Farms:
• Normal biosecurity measures on pig farms Include:
• Limit the access to essential personnel (farm employees,
veterinarians and essential service people)
• Implement policies that prevent employees who present signs of
flu-like illness from having contact with the pigs or other people on
the holding
• Prevent access of international visitors or people who have recently
returned from international travel, particularly from swine influenza
affected regions, into your holding
• Implement a shower-in/shower-out procedure and the use of farm-
specific clothing and footwear for employees entering the holding
• At minimum, employees should don farm footwear and completely
wash hands and arms before having contact with the pigs
• Enforce heightened personal hygiene practices including frequent
hand washing for all people in contact with pigs
8/2/2009 70
Swine Influenza Virus (SIV)
Transmission
• Swine diseases can be spread in a number of ways, including:
• Through diseased swine or healthy swine incubating disease
• Through animals other than swine (farm animals, pets, wild birds
and other wildlife, vermin and insects)
• On the clothing and shoes of visitors and employees moving from
farm-to-farm
• In contaminated feed, water, bedding and soil
• From the carcasses of dead animals
• On contaminated farm equipment and vehicles
• In airborne particles and dust blown by the wind
An Egyptian policeman wears a mask
as he stands guard in front of a pick
up truck full of pigs at the main
slaughterhouse in Cairo April 30, 2009
8/2/2009 72
Zoonosis
Swine Influenza Virus (SIV)
How Can Pigs Be protected?
• The following actions can potentially
prevent swine influenza:
• Vaccinating animals
• Ensuring farm workers maintain good
hygiene
• Following strict biosecurity practices
• Providing adequate ventilation in
barns
• Identifying and segregating sick
animals as early as possible
8/2/2009 73
Limit the Risk of Transmission
SIV On Pig Farms
1. Decreasing the spread of SIV includes:
2. Traffic control
3. Isolation
4. Sanitation
5. Herd health management
6. Program maintenance
7. Ensue Personal Protection Equipment(PPE)
onsite and an active fit testing program
8. Application of HACCP (Hazard Analysis of Critical
Control Points)
8/2/2009 74
Swine Influenza Virus (SIV)
Traffic control:
• Traffic control:
• Anyone exhibiting signs of respiratory illness should
avoid contact with animals
• Workers in swine facilities who have been exposed to
influenza or someone diagnosed with influenza should
avoid contact with animals until they have been
checked by a healthcare worker
• Avoid contact with swine outside regular employment
• Control and restrict visitors' access to the herd
• Require all visitors to wear clean boots, clothing and
gloves and wash hands thoroughly on entry and exit
• Prevent other animals from coming into contact with
the herd
• Maintain records of the movement of people, animals
and equipment on and off the premises
8/2/2009 75
Swine Influenza Virus (SIV)
Isolation:
• Isolation:
• Only obtain new animals from reputable sources and limit
the frequency of introducing new pigs to the herd
• House newborn, weaned, feeder, and breeding pigs
separately
• Move pigs in groups during each production stage, in an
all-in-all-out manner
8/2/2009 76
Swine Influenza Virus (SIV)
Sanitation:
• Sanitation:
• Routinely clean and disinfect buildings,
barns, equipment, clothing and footwear
• Designate a cleaning area for vehicles and
equipment
• Promptly dispose of dead pigs in a
manner that minimizes the chance of
spread of any disease
• Implement a manure management
program
• Avoid borrowing equipment and vehicles
from other farms
8/2/2009 77
Swine Influenza Virus (SIV)
Herd Health Management:
• Herd health management:
• Monitor herd health daily and employ veterinary services
• Uniquely identify all groups of animals for traceability purposes
(where they came from and where they are sold to)
• In consultation with a veterinarian, consider vaccinating animals
• Isolate sick pigs and immediately report any signs of illness to your
veterinarian or the nearest Department of Agriculture office
A Litter-Bed Pigpen for Breeding
and Growing-Finishing Pigs.
8/2/2009 78
Swine Influenza Virus (SIV)
Program Maintenance:
• Program maintenance:
• Train all staff on your biosecurity program and
monitor its effectiveness
• Be aware of any diseases in your area and
adjust your biosecurity program accordingly
• Recommend farm workers discuss an annual
flu vaccination with their doctor.
– Vaccination may reduce the amounts of
virus shed if infected during human
influenza outbreaks, and limit the potential
for human influenza virus infection of pigs. Full View of the
The effectiveness of current human
Litter-Bed Pig
vaccines against this new strain is not
known at this time Farm
8/2/2009 79
HACCP (Hazard Analysis of Critical
Control Points) On PIG Farms
• Application of HACCP (Hazard Analysis of Critical Control
Points) procedures will help to identify areas of greatest
risk to the business and allow for development of
preventative strategies
8/2/2009 80
A General
Biosecurity Checklist For Swine
8/2/2009 81
Veterinary Surveillance
• This disease is a scheduled and notifiable disease
in Ireland (Class B)
• Porcine surveillance: The Department of
Agriculture and Food and Fisheries (DAFF) (in
collaboration with the porcine industry
undertakes active and passive surveillance for
porcine
• Notification procedures is agreed between the
department of Agriculture and Food and Fisheries
the HSE in the event of Influenza being identified
or highly suspected from porcine
8/2/2009 82
Swine Influenza Virus (SIV)
Pharmacovigilance for Veterinarians
• EU Veterinary Suspected Adverse Reaction
form for Veterinary and Health Professionals
8/2/2009 83
Swine Influenza Virus (SIV)
Preplanning for Veterinarians Visits:
• The veterinarians should:
• Prepare and plan the visit by
Veterinarians
Porcine log Book
2009
contacting the producer
beforehand
• Park in designated areas or as far
as possible from animals
• Keep a log book of farms visited
8/2/2009 84
Swine Influenza Virus (SIV)
Interim Recommendations For Veterinarians:
• Use appropriate personal protective equipment:
– FFP 2-3 respirator masks, gloves, impermeable coveralls, protective clothing
and footwear and eye protection
• Wash hands thoroughly after handling animals
• Leave as you arrived and clean and sanitize vehicles and equipment
• Dispose of protective equipment in a safe manner:
– either leave it on the farm to be appropriately disposed or
– remove it and place it in “contaminated materials” containers for transport to
the office
• Prioritize work by attending low-risk jobs first and then observe animals
for concerns
• Avoid or minimize contact with manure storage, feed supplies, and water
supplies
• Until more is known about how this illness affects swine, if swine influenza
is suspected – do not travel to another swine farm for 48 hours
8/2/2009 85
Swine Influenza Virus (SIV)
Personnel Protection
• On arrival at a site, personnel should:
• Disinfect footwear in foot-bath
• Put on washable or disposable protective clothing (footwear and
overalls)
• Wash hands
• Before departure personnel should:
• Disinfect footwear and protective clothing (or leave on site if
disposable)
• Wash hands
• Contacts who work on pig farms should remain off work for 7 days
as soon as diagnosis is suspected!
8/2/2009 86
Veterinarians
Donning and Doffing PPE
8/2/2009 87
Veterinarians
Donning and Doffing PPE (HPSC Resource)
8/2/2009 88
Department of Agriculture
Local District Veterinary Offices (DVO)
COUNTY ADDRESS TELEPHONE
Carlow Athy Road, Carlow 059 9170022
Cavan Farnham St., Cavan 049 4368200
Clare Government Offices, Kilrush Road, Ennis, Co. Clare 065 6866042
Cork North Hibernian House, 80A South Mall, Cork 01 4149900
Cork Central Hibernian House, 80A South Mall, Cork 01 4149900
Cork West Darrara, Clonakilty Co. Cork 023 36200
Donegal Meeting House St, Raphoe, Co. Donegal 074 9145298
Dublin/ St John’s House, High St, Tallaght, Co. Dublin 01 4149900
Wicklow East
Galway Dockgate Building, Merchants Rd., Galway 091 507600
Kerry Spa Road, Tralee, Co. Kerry 066 7145052
Kildare/ Poplar House, Poplar Square, Naas, Co. Kildare 045 873035
Wicklow West
Kilkenny Hebron Road, Kilkenny 056 7772400
Laois Abbeyleix Road, PortLaoise, Co. Laois 057 8674400
Leitrim Cranmore Road, Sligo 071 9682000
Limerick Houston Hall, Ballycummin Avenue, 061 500900
Raheen Industrial Estate, Raheen, Co. Limerick
Longford Ballinalee Road, Longford 043 50020
Louth North Quay, Drogheda, Co. Louth 041 9838933
Mayo Michael Davitt House, Castlebar, Co Mayo 094 9035300
Meath Athlumney, Kilcairn, Navan, Co Meath 046 9082900
Monaghan Main Street, Ballybay, Co. Monaghan 042 9748800
Offaly Clonminch, Tullamore, Co. Offaly 057 9346037
Roscommon Convent Road, Roscommon 090 6630100
Sligo Cranmore Road, Sligo 071 9142023
Tipperary North St Conlon’s Road, Nenagh, Co. Tipperary 067 50014
Tipperary South Government Offices, Davis Street, Tipperary 062 80100
Waterford Govt. Offices, The Glen, Co. Waterford 051 301700
Westmeath Bellview, Dublin Road, Mullingar, Co. Westmeath 044 9339300
Wexford Vinegar Hill Lane, Enniscorthy, Co Wexford 053 9242008
8/2/2009 89
EU Possible Quarantine Zones for Infected
Pandemic Influenza A(H1N1) 09 Virus
on Pig Farms
Surveillance zones
Surveillance zone (minimum of 10
km radius from the infected
premises) Inplace for 30 days
Protection Zone
Quarantined Pig Farm Restricted
zone (minimum of 1 -3 km radius
from the infected premises)
Controls must be kept in place
for at least 21 days
Infected Premises
Restricted
Zone
Contaminated
Porcine Farm
There are no
controls on
people visiting
the Zone
Zone A
Adapted from EU Quarantine for
Avian Flu
DAFF:Information on Avian
Influenza Control Measures
Buffer Zone
8/2/2009 90
Zone B
Risk vs. Benefit Analysis for Decontamination
Decontamination is defined as :
What are the outcomes of “The process of removing or neutralising a hazard from the environment, property
or life form. Its objectives are to prevent further harm and optimise the chance for
natural stabilization? full clinical recovery or restoration of the object exposed to the contaminant”.
Yes
Can I change the outcomes No Do nothing except protect
of natural stabilization by
exposures!
the intervention?
What are the cost of the Risk
intervention in terms of risk EXCEEDS Do nothing except protect
versus benefit? benefit exposures!
Benefit “Decontamination Process”
EXCEEDS Refers to removal of clothing, neutralization of contaminate, verification of
contaminate neutralization, and isolation of all contaminated waste.
benefit
Engage in intervention
operations as long as the
8/2/2009
benefit exceeds the risk 91
Quarantine Zones for Infected Pandemic
Influenza A(H1N1) 09 Virus Pig Farms
Agriculture and Food (DAF) will institute biosecurity measures . These control measures focus on animal health issues and aim to
prevent any further spread of the disease among animals.
Pending confirmation of the outbreak, if deemed necessary, all the porcine in the holding may be culled and destroyed.
• Zone A : Infected premises • Buffer Zone: Surveillance zone
• Risk vs. Benefit Analysis • The Surveillance Zone must stay in place for at least 30 days
after the preliminary cleaning and disinfection of the infected
• The Protection Zone must stay in place for at least 21 premises has been carried out.
days after the preliminary cleaning and disinfection of • Identification of all porcine holdings
the infected premises has been carried out, and then the
• Prohibition on porcine fairs, markets, shows or other
Zone becomes part of the Surveillance Zone gatherings
• Killing and disposal of all porcine • Prohibition on the release of porcine, porcine products
• Cleaning and disinfection of the premises
Checkpoints will be
• Destruction or treatment of manure, slurry and bedding put in place to control
movements of
• Tracing and destruction of porcine meat and carcasses vehicles transporting
porcine or porcine
produced during risk period related products
• Epidemiological investigation and tracing of high-risk into/out of the Zones.
contacts
• Prohibition on porcine entering or leaving
• Controls on people, vehicles and other things entering
or leaving
• Zone B: Free from Disease
• Controls on re-stocking • A Further Restricted Zone may be declared outside the
Surveillance Zone if this is considered necessary to
control the disease. The measures to be applied in this
Zone will be determined depending on a risk assessment
8/2/2009 carried out at the time. 92
Maximum Decontamination Infected Premises Footbath
Layout Level C & D Protection Boot Cover
Tape &
(PPE) Reduction Outer Glove
Removal Glove Wash Segregated
Removal
(Hypothetical example ) Equipment
Stripper/ 6 5 4 3 2 1 Drop
Bagger
Boot Cover Boot Cover &
Removal Glove Rinse
Zone A
7 Suit/Safety Boot Wash
Canister or
9 8 Suit/Safety Boot Rinse
Mask Change
and Redress - Boot Cover/
Outer Gloves 10 Safety Boot Removal
11 Splash Suit Removal
CONTAMINATION 12 Inner Glove Wash
REDUCTION The contamination hazards at hazardous sites
Inner Glove Rinse vary greatly, the methods of decontamination
ZONE 13
may be adjusted by omitting, adding, or
changing the stations identified to reflect the
14 Face Piece Removal
contamination hazards at a site!
15 Inner Glove Removal
These figures are adapted from the, NIOSH/OSHA/USCG/EPA
Occupational Safety and Health Guidance Manual for
16 Inner Clothing Removal Hazardous Waste Site Activities.
CONTAMINATION
CONTROL LINE
SUPPORT Dryer/ 17 18 Field
8/2/2009 Dresser 93
ZONE Wash
Minimum WIND DIRECTION
Decontamination Layout 20
Levels C & D Protection Redress: Boot Covers
and Outer Gloves
Zone A
Decon 20
Solution Tank
Change-Over
Point (If needed)
Infected Premises
Remove
Water Boots/Gloves
and
Decon Outer Outer
Equipment Garments Garments
Drop (For Disposal
Remove and Off Site
Boot Covers Decontamination)
and Outer Gloves
Footbath
Plastic
Sheet
Can
Zone A
(10 gallon) Remove
SCBA
(If needed)
Contamination Reduction Corridor
8/2/2009 94
Basic Personnel Decontamination
Vehicle decon “Contamination Reduction Corridor” Setup Vehicle decon
Decon Water
Solution
Inner
Washer Rinser Stripper
Zone A
Equipment glove
Drop
bagger removal
Zone
Contaminated
Porcine Farm Entry Wash Rinse Can PPE Removal Exit
(10 gallon
Support
Footbath Can Can Can
Zone A
10 gallon 10 gallon 10 gallon
Footbath if no Decon pools
CRC setup
Storage and Garbage
Plastic (Tarp or Visqueen)
Barrier tape and pylons
Contamination Reduction Corridor
8/2/2009 95
Vehicle Decontamination
• Only allow essential vehicles onto the site. Staff, service vehicles
etc. should be parked outside the perimeter. Insist that all
vehicles that have to enter the site have been cleaned and
disinfected beforehand
• Vehicle cleaning and disinfection:
• On arrival at the farm, wheels, wheel arches, outside and
underside must be disinfected
• Before leaving the farm, wheels, wheel arches, outside and
underside must be washed and disinfected, ensuring that the World Trade Center/Ground Zero
Vehicle Decontamination Wash
surfaces are visibly ccontact with lean (must be dry)
• Wash and disinfect all surfaces which may have come into
contaminated material, such as:
– Wheels, wheel arches, outside and underside
– Trailer
– Equipment (e.g. trolleys, crates, modules, delivery pipes, sheeting, covers)
– Wipe areas of the driver’s cab that may have been contaminated, with
disinfectant
– Drivers should avoid contact with porcine or other porcine on premises outside
the infected area for at least 3 days (72 hours)
A list of approved disinfectants can be
found at: http://www.agriculture.gov.ie
8/2/2009 96
Food Safety Strategy for Ireland
“National Control Plan 2007”
8/2/2009 97
Swine Influenza and
“Pandemic (H1N1) 2009”
Swine influenza Pandemic (H1N1) 2009
• Swine influenza is • The Influenza Virus contains
commonly transmitted genes from pig, bird and
through direct contact or human influenza viruses, in
close proximity with pigs. a combination that has
never been observed before
Secondary cases following anywhere in the world
human-to-human
• 2009 Quadruple
transmission have been reassortment of three
reported in the past but viruses—a human virus, an
they have been very rare avian virus , and 2 porcine
• 1998 Triple reassortment viruses
8/2/2009 98
“Pandemic (H1N1) 2009”
Microbiology
• Influenza A viruses are negative-sense single-stranded RNA
viruses
• Family: Orthomyxoviridae
• Genus: Influenza virus A
• Enveloped virions are 80 to 120 nm in diameter, are 200 to 300
nm long, and may be filamentous
– They consist of spike-shaped surface proteins, a partially host-
derived lipid-rich envelope, and matrix (M) proteins surrounding
a helical segmented nucleocapsid (6 to 8 segments)
– The virus envelope glycoproteins (hemagglutinin [HA] and
neuraminidase [NA]) are distributed evenly over the virion
surface, forming characteristic spike-shaped structures; antigenic
variations in these proteins form the basis of the classification
system for influenza A virus subtypes
– There are 16 different HA antigens (H1 to H16) and nine different
NA antigens (N1 to N9)
• Human disease historically has been caused by three subtypes of HA (H1,
H2, and H3) and two subtypes of NA (N1 and N2)
• More recently, human disease has been recognized to be caused by
additional HA subtypes, including H5, H7, and H9 (all from avian origin)
8/2/2009 99
Phylogenetic Comparison To Other
Negative-sense RNA Viruses
• Influenza strains are
subtype A, B, or C
• Based on the
relatedness of the
matrix (M1) and
nucleoprotein (NP)
antigens
8/2/2009 100
Influenza Virus
Influenza Type A and Its Subtypes
3 integral membrane
proteins that coordinate
fusion are :
1. NA
Pink - 2. HA
Hemagglutinin 3. M2
Yellow -
Neuraminidase
CDC
8/2/2009 101
Influenza Virus Influenza Type A
Influenza A viruses are pleomorphic virions
(that is, they vary in shape)
They have negative-sense, single-stranded HA - hemagglutinin
RNA and an RNA genome that is SEGMENTED
There are eight RNA segments in influenza A NA - neuraminidase
The nucleocapsid is helical
Virions contain RNA polymerase packaged
within the virus particle helical nucleocapsid (RNA plus
These viruses are enveloped and have two
NP protein)
membrane glycoproteins: lipid bilayer membrane
1. HA - hemagglutinin - This is the
attachment and fusion protein polymerase complex
2. NA - neuraminidase - This is
important in release. It removes sialic
acid from proteins of the virus and the
host cell
M1 protein
M1 protein underlies the lipid bilayer, is
the most abundant protein
Genome organized in 7 or 8 segments.
3 integral membrane proteins that
coordinate fusion are NA, HA, and M2 (not
shown)
NP protein important for subtyping
NS protein, not shown, important for
virulence
8/2/2009 102
ORTHOMYXOVIRIDAE
Influenza Type A (H1N1)
PROPERTY ORTHOMYXOVIRIDAE
Influenza A(H1N1)
Genome segmented
RNA synthesis nuclear
Need for mRNA primer yes
Hemagglutinin,neuraminidase Influenza A and B have both but on 2
different proteins (HA and NA)
Syncytia formation no (HA functions at acid pH)
8/2/2009 103
Replication of Influenza A Virus
• 1. A virion attaches to the host cell membrane via HA
and enters the cytoplasm by receptor-mediated
endocytosis
– HA2 promotes fusion of the virus envelope and the
endosome membranes
• 2.The major envelope protein M1 dissociates from the
nucleocapsid and viral RNA segments are translocated
into the nucleus
• 3. In the nucleus, the viral polymerase complexes
transcribe (STEP 3a) and replicate (STEP 3b) the viral
RNA segments
• 4. Newly synthesized mRNAs migrate to cytoplasm
where they are translated into viral proteins
• 5a. Newly synthesised M1 viral proteins move to the
nucleus - bind freshly synthesized 21 y y copies of viral
RNA segments.
• 5 b. Posttranslational processing of HA, NA, and M2
includes transportation via Golgi apparatus to the cell
membrane
• 6. The newly formed nucleocapsids migrate into the
cytoplasm - interact via M1 with a region of the cell
membrane where HA, NA and M2 have been inserted
• 7. Then the newly synthesized virions bud from
infected cell. NA destroys the sialic acid moiety of
cellular receptors, thereby releasing the progeny
virions
8/2/2009 104
“Pandemic (H1N1) 2009”
Genetic Origins
• HA (or H1): Haemagglutinin type 1 , swine, also
in the 1918 influenza Catch host's cell receptors
• NA (or N1): Neuraminidase type 1, swine,
Eurasian, help start the infection
• PA: avian, north America
• PB1: human, likely from the 1993 H3N2
influenza
• PB2: avian, from north America
• NP: swine, north America
• M: swine, Eurasia
• NS: swine, north America
– Non-structural proteins
NEP (Nuclear Export Protein):, swine North America
8/2/2009 105
Definition of Pandemic
• The word “pandemic” comes from the Greek “pan-“, “all” +
“demos”, “people or population” = “pandemos” = “all the
people.”
• A pandemic affects all (nearly all) of the people.
• By contrast, “epi-“ means “upon.” An epidemic is visited
upon the people. And “en-“ means “in.” An endemic is in
the people.
Technical report - Pandemic influenza
8/2/2009 106
preparedness in the EU/EEA
Quadruple Reassortment Result
Timeline of 2009 Hybrid “quadruple reassortant” new
Pandemic Influenza A(H1N1) 09 Virus —a human
No Vaccine
virus, an avian virus , and 2 porcine viruses
Emergence of Some “Pandemic (H1N1) 2009”
Influenza Viruses in H1 Pandemic Influenza A(H1N1) 09 Virus 1.247eaths
Avian
Humans Influenza
Pandemic
vaccines
1997: In Hong Kong, avian influenza A (H5N1)
H5 Total of 262 Deaths 2009 WHO
(Asiatic) Russian
H9 1997-2009:avian influenza A (H9N2)
Influenza H7 1980- 2003: Avian influenza A (H7N7)
B Russian Flu (H2N2) 1889/1890 1 million Russian Flu (H2N2 A/USSR/90/77 (H1N1)
1900 Old Hong Kong Influenza H3N8? Asian 2002 Severer Acute Respiratory Virus (SARS-CoV)
774 deaths
Influenza
Old Hong Kong
Regular vaccines
Influenza H2 1957 (Asian Flu) 1-4 million deaths H2N2
Spanish “Triple reassortment”
Influenza H3
H2
1968 (Hong Kong Flu) 1-4 million deaths H3N2 Aggressive H3N2
Hong Kong Swine to Human
H1 1918 (Spanish Flu) (H1N1) 20-40 million deaths
Influenza
1998/9
1918 1957 1968 1977 1993 1997 2003 2009
8/2/2009 By 1993, a bird flu virus had adapted to pigs, grabbed a few human flu 107
US 1976 Swine Influenza virus genes, and infected two young Dutch children, even displaying
evidence of limited human-to-human transmission.
Past & Potential Flu Pandemics Summary
Epidemics/ Subtype Year Approx Approx Deaths Approx Estimated Severity of
Pandemics Infected Mortality % Reproductive the
Number (Ro) Pandemic
(Asiatic) H2N2 1889/1890 unknown 1 million unknown Unclear Moderate
Russian Flu
Spanish flu H1N1 1918/1919 500 million 20-50 /?50 million 2.5 -10% 1.5-1.8 Severe
+ 2nd Wave 3.0-3.5
Asian flu H2N2 1956-58 45 million 1-4 million <0.2% 1.5 Severe
Hong Kong flu H3N2 1968-69 50 million 1-4 million >0.2% 1.3-1.6 Moderate
Avian flu H5N1 1990-today 433 262 61% 2.14 Severe
Ongoing (still researching)
SARS SARS-CoV 2002-03 8,096 774 9.6% 0.44-2.29 Severe
1,17 med
Swine flu H3N2 1976 250-300 1 0.3% 1.09 Mild
Pandemic H1N1 2009 184,435 + 1,247 (ECDC) EST. <0.55% 1.2.-1.8 Moderate
(H1N1) 2009 Ongoing CFR- 0.4 Med 1.5
(Mexico)
Seasonal Flu A/H3N2, Yearly 1 Billion 250,000-500,000 <0.05% NA NA
(Epidemic) A/H1N1,
and B
8/2/2009 108
Epidemiology of Ireland
Spanish Influenza 1818-1819
• Ireland: 10,651 influenza • The deaths per 100,000
deaths registered by age group:
(Unconfirmed 20000) under 5 years 295
– Male : 5,591 5-10 years 120
– Female: 5,060 10-15 years 103
• Mortality Rate: of 243 per 15-20years 223
100,000 population 20-25 years 329
– The mortality rate 25-35 years 380
varied by region: 35-45 years 239
• Leinster: 304 per 45-55 years 222
100,000
• Ulster: 302 per 1918 Flu Pandemic In 55-65 years 226
100,000 Ireland
65-75 years 221
• Munster: 159 per < 75 years 256
100,000
• Connaught: 114 per
100,000
8/2/2009 109
Irelands Road to
Pandemic Preparedness
• 1999 -World Health Organisation (WHO)
– “Influenza Pandemic Plan”
• 2001- Ireland Developed
– “A Model Plan for Influenza Pandemic Preparedness”
• 2002- Plan was revised
• 2004- Influenza Pandemic Preparedness Plan
• 2005- WHO published
– “WHO Global Influenza Preparedness Plan”
• 2007 - Ireland Developed
– “National Plan for Pandemic Influenza”
• 2009 – Ireland begins to update National Pandemic
Influenza Plan in context to Pandemic Influenza A(H1N1) 09
virus
8/2/2009 110
Scientific Models of the Impact of an
Influenza Pandemic
• USA: Pandemic Severity Index
• United Kingdom: Empiric HPA Model
Irelands “National Pandemic Influenza Plan”
uses the HPA Model
Health Protection Surveillance Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
Gani and Meltzer Model are also used See Website for download for
to predict ICU rates and Ro rates in the
National Pandemic Plan
clinicians
8/2/2009 111
Pre-Pandemic Planning:
The Pandemic Severity Index
8/2/2009 112
Pandemic Severity Index
• The pandemic severity index levels are:
• Category 1, CFR of less than 0.1%
• Category 2, CFR 0.1% to 0.5%
• Category 3, CFR 0.5% to 1%
• Category 4, CFR 1% to 2%
• Category 5, CFR 2% or higher
8/2/2009 113
Pandemic Severity Index
• Class I
• A Class I pandemic is characterized by a widespread novel infection that, while it may cause sickness, does not
create large scale deaths or economic impacts. The 1968 Flu is a good example of a Class I pandemic. Also, the
current outbreak of Chikungunya could be considered a Class I pandemic. The observed death rate worldwide
would not increase significantly from a Class I pandemic.
• Class II
• A Class II pandemic is characterized by a novel infection that has a low infection rate or a minimal case fatality rate
and thus any serious effects on economies or overall mortality rates is minimized. The current HIV/AIDS pandemic
can be considered a Class II pandemic. In any one year, a Class II pandemic would kill up to 1 million people.
Pandemic (H1N1) 2009 is a Class 2 Pandemic June 12 2009
• Class III
• A Class III pandemic is characterized by novel infection that spreads quickly but has a low total mortality rate. The
1918 pandemic would be considered a Class III pandemic. Note: between 50 - 100 million people died during the
1918 pandemic. A class III pandemic would kill approximately 2% of all humans or 120 million people.
• Class IV
• A Class IV pandemic is characterized by a novel infection that spreads quickly but has a medium level of mortality
rates. The Black Death of 1347 - 1350 would be considered a Class IV pandemic. A Class IV pandemic would
directly kill 40% of humans. A Class IV pandemic would kill 2.4 billion people. If Influenza A (H1N1) acquires the
ability to easily infect humans to humans at the current CFR, it would be a Class IV pandemic.
• Class V
• A Class V pandemic is characterized by a novel infection that spreads quickly, has a high infection rate and a high
mortality rate. There are no documented records of a Class V pandemic, but some experts believe that the new
world indigenous peoples were affected by old world diseases in a Class V manner. A class V pandemic would
directly kill off approximately 90% of living humans. A class V pandemic would kill 5.4 billion people.
8/2/2009 114
Community Mitigation Strategy by
Example on Pandemic Severity Scale
8/2/2009 115
Irelands Pandemic Mitigation
“Empiric HPA Model”
• The Empiric HPA model outlines a single wave
pandemic over 15 weeks with a peak of clinical
cases and deaths occurring weeks six and seven .
According to this
model, just over
20% of cases and
deaths occur in
each of these
weeks.
8/2/2009 116
Irelands Mitigation Strategies
• The following scenario has been adopted for planning
purposes:
• A cumulative clinical attack rate of between 25% and
50% of the population
• A hospitalisation rate of between 0.55% and 3.70%
• A case fatality rate of between 0.37% and 2.50%
(equivalent to the 1957 and 1918 pandemics
respectively)
• Calculations are based on the Census 2006 Preliminary
Report, which puts the Irish population at 4,234,925
8/2/2009 117
Irelands Assumed
Clinical Attack Rate: Scenario 1
• Scenario 1
• Irish population at
4,234,925
• Considers:
– Clinical Attack Rate of
25% 1,058,731 cases
– Hospitalisation Rate of
0.55% 5,823 over the 15 wks
– Mortality Rate of
0.37% 3,917 deaths
• Weekly number of cases,
hospitalisations and
deaths as predicted by
the empirical model.
8/2/2009 118
Irelands Assumed
Clinical Attack Rate: Scenario 2
• Scenario 2
• Irish population at
4,234,925
• Considers :
– Clinical attack rate of
50%: 2,117,463 cases
– Hospitalisation rate of
3.7%: 78,346 over 15 wks
– Mortality rate of
2.5%.: 52,937 deaths
8/2/2009 119
WHO Phases 4 and 6
Irelands National Objectives
• To assess the extent of human-to-human transmission and
determine pandemic risk
• To detect, notify and characterise additional clusters (including the
identification of risk factors and other data concerning transmission
as requested by WHO)
• To assess the threat to human health and the impact of any control
measures, and identify resources required for enhanced control
• To determine and monitor public health resources required for
pandemic response
• Monitor the global situation (vaccine, antiviral availability, best
practice recommendations) and estimate the impact of antiviral
programmes (and vaccination programmes if used)
8/2/2009 120
WHO Phase 4-6, Irish Alert Level 1
(Ireland Not Yet Affected)
• 1.Establish surveillance of clinical conditions which have been linked to the novel
virus abroad, but which are not necessarily part of the clinical criteria for routine
influenza investigation
• 2.Travellers returning from areas with pandemic activity should be provided with
information and advised to seek medical attention if they become unwell.
• 3.All doctors should be advised to ask patients presenting with respiratory illnesses
about overseas travel
• Samples should be collected for influenza detection and sent to the NVRL from all
patients with respiratory illness who have:
– Fulfilled the case definition for pandemic influenza orBeen hospitalised with viral pneumonia
or
– Travelled to areas of known or potential pandemic influenza activity in the week preceding
onset of illness or;Have a flu-like illness and are family members or other close contacts of
either of the above
• 4.Departments of Public Health must immediately be notified of:
– All cases who have been hospitalised with viral pneumonia (or other particular clinical
features associated with the pandemic strain that form part of the case definition); and who
have travelled to areas of known or potential influenza activity in the week preceding onset of
illness and
– Those who have a flu-like illness and are family members or other close contacts of a person in
either of these categories
8/2/2009 121
WHO Phase 4-6, Irish Alert Level 1
Once Ireland Is Affected!
• As soon as the first cases of pandemic influenza are
detected in the country the surveillance activities will
be focused on:
• Detecting community outbreaks
• Tracking trends in influenza disease activity and
identifying populations that are severely affected
• Real-time reporting between he following is essential:
– Healthcare institutions
– Clinicians
– Public Health
– Sentinel General Practitioners
– NRVL and Laboratories
– Pharmacists
–
8/2/2009
Etc. 122
Irelands Governmental
Lead Agencies, Groups and Committees
Emergency/Incident Type Lead Government Lead Principal Support Role Other Potential Support Remarks
Department Response Roles
Agency as per
Framework
Influenza Pandemic Influenza and DOHC HSE HSE Local Authorities
Pandemic Other Public Health All members of the (DEHLG)
Emergencies Interdepartmental CD (DOD)
Steering Committee on Revenue Commissioners
Public Health Emergency FSAI7 (DHC)
Planning
Current
Pandemic Influenza
Emergency Planning
Roles and Responsibilities for the Pandemic (H1N1) 2009
8/2/2009 123
Irelands Mitigation Strategies
Current Pandemic Roles
• “A national plan for pandemic influenza was put in place in
January 2007, describing the health system’s response to a
possible worldwide pandemic
• Additionally The National Pandemic Expert Group has
produced Expert Influenza Guidance in November 2008
which is currently being followed. It has met regularly, since
an outbreak was first confirmed in Mexico, to assess the
public health and clinical guidance to ensure an appropriate
level of preparedness and response for Ireland
• The Department is in close contact with the World Health
Organisation, the European Centre for Disease Prevention
and Control and our counterparts in the North of Ireland”
Slide Cited From FAQs At DOHC Daily Report
8/2/2009 124
Irelands Mitigation Strategies
Current Pandemic Roles
• “What is being done currently to prepare for a possible
pandemic?
• The Department of Health and Children continues to be in close contact
with the HSE and the National Pandemic Expert Group
• The Department of Health and Children and the HSE participate in regular
teleconference meetings with the European Centres for Disease Control,
public health officials in other European Member States and the WHO
• The Department of Health and Children is the lead government
department for public health emergencies and works closely with the HSE
in response to pandemic influenza
• The National Public Health Emergency Team (NPHET) has been meeting
since the outbreak was first confirmed to coordinate the response to this
threat
– (This is the forum for managing responses between DOHC and the HSE during
the planning and response phases of a public health emergency)
• NPHET is chaired by the Secretary General of the Department of Health
and Children and has been meeting frequently throughout the current
situation” Slide Cited From FAQs At DOHC Daily Report
8/2/2009 125
Irelands Mitigation Strategies
Current Pandemic Roles
• “What is being done currently to prepare for a possible
pandemic?
• The Government Interdepartmental Committee has been
meeting to deal with health emergency planning involving
transport, foreign affairs, education, security, etc.
• An information leaflet has been printed and distributed to
households
• Posters and leaflets have been placed in air and sea ports
• Ireland have accumulated anti-viral stockpiles to treat half
of the population
• Anti-viral medication has been distributed through public
health departments to treat initial cases as they arise
• Advertising will be placed on TV and other media”
Slide Cited From FAQs At DOHC Daily Report
8/2/2009 126
Pandemic Influenza A(H1N1) 09 Virus
Containment to Mitigation Strategies
• Reported aggregated
and individual number
of cases of influenza
A(H1N1)v infection,
proportion of
individually reported
cases, last updates and
date of changing to
mitigation strategy of
EU+3 countries, as of 27
July 2009
8/2/2009 127
Public Health Strategies
“Containment” and “Mitigation”
Public health strategies against pandemic influenza are
characterized in two phases: “Containment” and “Mitigation”
“Transition from containment to mitigation phase is necessarily a gradual, phased process. It depends on factors
such as epidemic progression (indicated by daily number of new cases and/or the effective reproduction
number), disease severity (indicated by proportion of those infected with complications, requiring
hospitalisation and case fatality), burden to medical services, resource capacity and effectiveness of
containment, and broader considerations in the community Influenza outbreak follows certain progression”
• Containment applies when Ireland is free from • Mitigation applies when local transmission of
Influenza A(H1N1) 09 virus (Pandemic Phase 5- Influenza A(H1N1) 09 virus (Pandemic phase
6 /Irish alert level 1-2) or when there is 6/Irish Alert level 2-4) becomes significant
insignificant local transmission and containment strategy is no longer
• Containment (or limiting the entrance and appropriate or feasible
initial spread of influenza A (H1N1)v into the • Mitigation (or minimising the impact of the
country )involves stringent port health flu virus as its circulation increases) aims at
measures, aggressive isolation of cases, contact relieving disease burden and mortality
tracing, quarantine and chemoprophylaxis to through hygiene measures, social distancing,
cut off disease introduction and transmission medical resource mobilization, self-care and
surveillance of acute febrile respiratory illness
with or with not pneumonia of a defined high
risk group
8/2/2009 128
“Pandemic (H1N1) 2009”
“First One Hundred and Seventeen Report”
“Chief Medical Officer's Press Conference July, 16, 2009” at www.DOHC.ie
Policies and Procedures Overview Transmission Overview
• Regionally sporadic cases of mild severity
• 8 cases occurred by in-country transmission
• “Containment strategies” changed to “mitigation strategies” • 96 cases occurred by out of country transmission
for Thursday, July, 16, 2009
• I04 Confirmed Cases
• Public Health: • 5 Hospitalization (No Ventilation or deaths)
– Clinically contract tracing rather than laboratory tracing
• 15 cases under age of 15 years old
– Public health invention to general treatment intervention
• 4 cases over 65
– No contract tracing
• 89 cases between 15 -64
• More females than males
• General Practitioners:
– Will diagnose and prescribe antivirals by case by case
• H1N1 Influenza reporting will be incorporated in normal influenza
surveillance via CIDR sentinel physicians
• Laboratory :
• Shift from viral testing to only testing specific cases
• Antivirals :
• Will be assessed on severity of case rather than general
prophylaxis
– No resistance to Tamiflu in Ireland
– Tamiflu resistance has occurred in three cases reported
China, Japan, Denmark
• Vaccines:
– Influenza A(H1N1)v vaccine available in August September
2009
– Dissemination of vaccine planning and implementation of
the programme is a planning priority
– Seasonal vaccine is encouraged for all groups July, 14, 2009 DOHC GP Briefing
for “Mitigation” Policy changes!
http://www.dohc.ie/issues/swine_i
nfluenza/letter_med_pract_140709
.pdf?direct=1
8/2/2009
Irelands Mitigation Strategies
Current Pandemic Roles for Pandemic (H1N1) 2009
WHO Phase 6 /Ireland Alert Level 3-4- Phase 2 “Mitigation”
• Containment to Mitigation strategies: • Laboratory :
• Shift from viral testing to only testing specific cases
“Containment strategies” changed to • Antivirals :
“mitigation strategies” for • Will be assessed on severity of case rather than
Thursday, July, 16, 2009 general prophylaxis
– No resistance to Tamiflu in Ireland
– Tamiflu has occurred in four cases reported China,
• Surveillance: Japan, Denmark,Canada
– H1N1 Influenza reporting will be incorporated in normal
influenza surveillance via CIDR and influenza surveillance reports • Vaccines:
– Influenza H1N1 available in August September
2009
• Public Health: – Dissemination of vaccine planning and
– Public health invention to general treatment implementation of the programme is a planning
intervention priority
– Clinically contract tracing rather than laboratory – Seasonal vaccine encouraged for all groups
tracing
– No contract tracing – Will be updated as more information comes
– SOP for surveillance available!
• General Practitioners:
– Will diagnose and prescribe antivirals by case by case
8/2/2009 130
Irelands Mitigation Strategies
Public Health Measures
• Public health measures that may be deployed in mitigation phase:
• Active promotion and adoption of basic measures: personal protective measures such as
hand hygiene and use of face masks; personal care for those who fall ill; environmental
hygiene, etc.
• Social distancing: school closure, work place contingencies, cancellation of mass gatherings,
etc.
• Designated clinics operated by Hospital Authority as focused first-line to triage and to look
after patients with flu symptoms
• Antiviral stockpile mobilized for treatment of patients, chemoprophylaxis of healthcare
workers and essential service providers in the public sector
• Vaccine administration if available
• Mobilize private sector
• Private enterprises mobilize business continuity plans
• Self-care: Sick patients stay home until their illness is over for at least 48 Hours
• Risk communication to different community segments
Slide Cited From FAQs At DOHC Daily Report
8/2/2009 131
Dynamic Risk Assessment (DRA) Model
Evaluation Form
• Incident ID: Pandemic Influenza (2009)
• Date: 15, July, 2009. Dynamic Risk Assessment (DRA) 0 1 2 3 4
• Completed by: IFPRI Severity Index Score x
Confidence Index Score x
Spread Index Score x
Intervention Index Score x
Context Index Score x
Latest Analysis Overview:
• Score: 13/20 Areas of Improvement are in Blue,
others have been met as of July 31 2009!
• Severity: Remains moderate
• Spread: 98-99% are mild cases and 1-2% severe cases worldwide
• Interventions: Containment to Mitigation strategies
• Context : Measures need to be increased in of public health messages to ascertain
ambiguities in mitigation strategies for antiviral dosages, vaccines, pregnancy,
asthmatics , school closures, summer camps and long term care guidelines ,and
national shipping guidelines for specimens!
General Parameters on following slides
Dynamic Risk Assessment (DRA) Model
“Severity Index”
• The seriousness of the incident in terms of the intrinsic propensity in a specific circumstance to cause harm to individuals or to a
population
• Severity and prognosis of known case
• The degree of harm already incurred, or likely to incurred by those already affected including, course, complication, death and
morbidity rates as obtained from established knowledge, and the spread of onset duration of Illness
Grade Qualifier Description Examples Adapted (IFPRI)
0 Very low Seldom causing severe illness Common Cold
Swine flu Influenza (SIV)
MRSA in a domestic setting
1 Low Occasional severe illness rarely with long term effects or death Hepatitis A in a primary school
Seasonal Influenza
2 Moderate Often Severe illness occasionally with long term health effects or death Pandemic Influenza A(H1N) 2009 virus
Toxigenic E. coli 0157
Pulmonary TB
MRSA infection in high dependency unit
Hepatitis B or C Infections
Legionnaires Disease
Guillain Bar syndrome (GBS)
3 High Usually severe illness often with long term effects or death Meningococcal disease
MDRTB
HIV/AIDS (most deaths caused by sequelae)
4 Very high Severe illness almost invariably fatal VHF “Ebola”
VCJD
Dynamic Risk Assessment (DRA) Model
“Spread Index”
• The Intrinsic temporal and spatial potential for spread including the infective dose. The virulence of the organism, the availability of the route of spread, the observed
spread and susceptibility of the population (eg lack of immunity) in the set of circumstances
• Potential of the organism to spread given the circumstance
• The transmissibility of the organism, its characteristics (virulence and infective dose) it (s) models of transmission and the availability of the route of infection
• The susceptibility of population at risk i.e. the state of immunity, general health and nutrition of the population under consideration and extent to which normal
defence mechanisms will protect the population
Grade Qualifier Description Examples Adapted (IFPRI)
0 Very low Very low likelihood of spread with very few Single case of Swine flu Influenza (SIV)
new cases Single case of campylobacter
1 Low Low likelihood of spread with very few new A single case of meningococcal disease
cases Positive case of TB (smear neg)
2 Moderate Moderate likelihood of spread with very few Viral gastro-enteritis in nursing home
new cases. A handful of cases of hepatitis occurring
May develop into a limited outbreak over a prolonged period of time in a large
community
Positive smear for TB
3 High High likelihood of spread with many new Endemic/Pandemic Influenza
cases. Cholera and dysentery in a deprived
May develop into a large outbreak population (children under 8)
4 Very high Spread almost inevitable Measles in a non-immune sub-population
Dynamic Risk Assessment (DRA) Model
“Confidence Index”
• The level of confidence, epidemiology, clinically, statistically and from laboratory evidence, that the diagnosis is correct in the set of
circumstances
• Confidence in the hypothesis
• Extent of confidence in and consistency of the clinical picture in terms of available laboratory diagnostics results and associated confounding
factors including ambiguity and uncertainty
Grade Qualifier Description Examples Adapted (IFPRI)
0 Very low Available evidence suggests that a hypothesis Hunch
is correct with an empirical probability of less
than 10 %
1 Low Available evidence suggests that a hypothesis Alternative hypothesis more likely but
is correct with an empirical probability in the cannot exclude the working hypothesis
range of 10-25%
2 Moderate Available evidence suggests that a hypothesis Alternative hypothesis equally likely
is correct with an empirical probability in the
range of 25- 50%
3 High Available evidence suggests that a hypothesis Typical incident picture without conflicting
is correct with an empirical probability in the information
range of 50-85%
4 Very high Available evidence suggests that a hypothesis Typical incident picture with increasing
is correct with an empirical probability higher confirmation
than 85%
Dynamic Risk Assessment (DRA) Model
“Intervention Index”
• The feasibility to intervene to alter the course and influence the outcome of the event in terms of containing, reducing or eliminating the
transmission of the organism, or assuaging public anxiety. The feasibility of delivering what is needed to whom is needed, to whom it is
needed and when and when and where it is needed, considering the extent to which to interventions are intrinsically simple, effective,
available, affordable, cost-effective, acceptable, timely and well targeted
Grade Qualifier Description Examples Adapted (IFPRI)
0 Very low Intervention well established with clear benefits and Hand Hygiene (washing advice)
no anticipated difficulties to implement Cough and respiratory etiquette advice
1 Low Interventions with clear beneficial effects and few Withdrawal of contaminated food(pork) in a
difficulties to implement closed institution
Antiviral and vaccinations to a small group of
vulnerable contacts
A case of influenza in a child with vulnerable
contacts to the household
2 Moderate Interventions with some beneficial effects and some Prophylaxis to immediate family and close
difficulties to implement contacts in pandemic influenza case where they are
dispersed in either low or high risk groups
3 High Some remedial intervention possible but either National food withdrawal
difficult to implement, relatively ineffectual or other Urgent mass immunization campaign
significant problems Reponses to mass local in-country transmissions
to defined high risk groups
4 Very high Remedial intervention very difficult Response to animal and human outbreak of
Pandemic influenza( with or without mutation)
Acute febrile respiratory illness complicated by
pneumonia of high risk group in high dependency
unit
Dynamic Risk Assessment (DRA) Model
“Context Index”
• The broad environment, including public concern and attitudes, expectations, pressures, strengths of professional knowledge and the overall setting
of external; factors including politics, in which events are occurring and decisions on responses are being made
• 5.1 Media, parents and local concern:
– The degree to which media, parents, local concern, politics aggravate and raise the profile of the event under consideration
• 5.2 Historical problems:
– Influence of local experience of similar interests and previous events, the way they were handled, associated consequences and expectations arising
• 5.3 Peer group practice:
– Extent to which an established approached or recommended best practice is tested and documented (national guidelines)
• 5.4 What is happening elsewhere:
– Extent to which other similar incidents are being managed and publicised, with resultant with resultant effect on public attitudes and expectations
Grade Qualifier Description Examples Adapted (IFPRI)
0 Very calm No raised level of interest Apathy, Public/media are supportive on immunizations, antivirals
treatment, or overall response
Common adverse problems are fairly well understood and
documented
1 Calm A small degree of increased interest with a low level of conflicting Misunderstanding corrected by routine information
factors. Seasonal Influenza immunization campaign
Little public concern A few cases of Influenza with local school transmissions
2 Passible Interventions with some beneficial effects and some difficulties to A series of Influenza ,virus transmissions associated with mass
implement gathering, schools, residential care homes where acquired infection is
low
3 Difficult Context is sensitive with significant difficulties, press interest and local Significant deaths of frontline healthcare workers and
people (unaffected)involved. The incident could go very wrong unless children
carefully handled. The event could have re-occurred in spite of
Widespread in-country transmission affecting several
preventative actions
schools
Unjustified allegations about mitigation measures for
school children and pregnancy with media coverage
4 Very difficult Significantly raised public concern and political and emotional pressure Animal and human Pandemic influenza A(H1N1) virus 2009 (with or
with the public and the media declaring antagonistic and unhelpful without mutation) linked to new source
views Antiviral/pandemic vaccines show to have serious and unexpected
side effects for children and pregnancy (eg., Gillian Bar Syndrome GBS)
Pandemic (H1N1) 2009
“The Pandemic!”
This preliminary negative stained transmission electron micrograph depicts
some of the ultrastructural morphology of the A/CA/4/09 swine flu virus.
Courtesy of CDC/ C. S. Goldsmith and A. Balish.
8/2/2009 138
Influenza Antigenic Changes- Drift
• Antigenic Drift
• Minor change, same
subtype
– Caused by point mutations
in gene
– May result in epidemic
• Example of antigenic drift
– In 1997, A/Wuhan/359/95
(H3N2) virus was dominant
– A/Sydney/5/97 (H3N2) This colorized image, released by the
U.S. Centers for Disease Control and
appeared in late 1997 and Prevention April 24, 2009, depicts the
influenza A H1N1 "swine flu" virus from
became the dominant virus an outbreak in 1976
in 1998
8/2/2009 139
Influenza Antigenic Changes - Shift
• Antigenic Shift
– Major change, new subtype
– Caused by exchange of gene
segments
– May result in pandemic
• Example of antigenic shift European
Surveillance
– H2N2 virus circulated in 1957-1967 Network for
Influenza in
– H3N2 virus appeared in 1968 and Pigs (ESNIP)
completely replaced H2N2 virus
8/2/2009 140
Categorizing Influenza Virus
“Viral Nomenclature”
Type of nuclear
material
Neuraminidase
Hemagglutinin
A/California/04/2009(H1N1)swl
Virus Geographic Strain Year of Virus
type origin number isolation subtype
Try These Two! A/Brevig Mission/1/1918(H1N1)
8/2/2009 141
A/New Jersey/76 (Hsw1N1)
“Pandemic (H1N1) 2009”
Antigenic Shift Pathogenesis
• Antigenic Shift
– The genetic change that enables a flu strain to
jump from one animal species to another,
including humans, is called antigenic shift.
Antigenic shift can happen in three ways:
• Antigenic Shift 1
– A duck or other aquatic bird passes a bird
strain of influenza A to an intermediate host
such as a chicken or pig.
– A person passes a human strain of influenza A
to the same chicken or pig.
– When the viruses infect the same cell, the
genes from the bird strain mix with genes from
the human strain to yield a new strain.
– The new strain can spread from the
intermediate host to humans.
• Antigenic Shift 2
– Without undergoing genetic change, a bird
strain of influenza A can jump directly from a
duck or other aquatic bird to humans.
• Antigenic Shift 3
– Without undergoing genetic change, a bird
strain of influenza A can jump directly from a
duck or other aquatic bird to an intermediate
animal host and then to humans.
– The new strain may further evolve to spread
from person to person. If so, a flu pandemic
8/2/2009 could arise. 146
Genetic Relationships among Human and
Swine Influenza Viruses, 1918-2009
• Red arrows indicate human influenza virus lineages, black arrows swine influenza virus lineages,
and gray arrows exportation of one or more genes from the avian influenza A virus gene pool.
Horizontal bars shown inside the virus represent each of the eight virus genes, abbreviated PB2,
PB1, PA, HA, NP, NA, M and NS. Credit: NIAID
8/2/2009 147
“Pandemic (H1N1) 2009”
Origins Overview
• Nature magazine article on 11 June, 2009, about the “Origins and evolutionary
genomics of the 2009 swine-origin H1N1 influenza A epidemic”.
8/2/2009 149
Genetic Components of Triple-Reassortant Swine Influenza A (H1)
• Triple-Reassortant Swine Influenza A (H1)
Viruses Isolated from 11 Patients between December 2005 and February 2009 in
the United States:
Triple-Reassortment Swine Tripple-Reassorment Swine
H1N1 Influenza Virus H1N2 Influenza Virus
(Pts 1-6 and 8-11) (Pt 7 (2007))
Note Pt 7visited a Pig Fair
(genetic ressortment H1N2)
PB2 PB2
Swine PB1 PB1
Avian PA PA
Human HA HA
NP NP
NA NA
M M
NS NS http://content.nejm.org/cgi
/reprint/NEJMoa0903812.p
df
(For personal use only)
Tripple Reassortment
Classical swine, North American Lineage
Avian, North American Lineage
Human (Seasonal )H3N2
8/2/2009 Human (Seasonal )H1N1
150
Pandemic (H1N1) 2009
“The Pandemic!”
Human H1N1 Cases From Human H1N1 Cases From California
Triple -Reassortment Swine 1998 Quadruple Reassortment 2009
PB2 PB2
PB1 PB1
PA PA
HA HA
NP NP
NA NA
M M
NS NS
“Quadruple Reassortment”
Classical swine, North American Lineage
Avian, North American Lineage http://content.nejm.org/cgi/
Seasonal H3N2 reprint/NEJMoa0903812.pdf
(For personal use only)
Eurasian swine Lineage
8/2/2009 151
H1N1 H3N2 H1N1
(Swine) (Human) (Avian)
Pandemic (H1N1) 2009
PB2 PB2 PB2
PB1 PB1 PB1 Virus Lineage Summary
PA PA PA
HA HA HA
NP NP NP Classical swine, North American Lineage
NA NA NA Avian, North American Lineage
M M M
NS NS NS Seasonal H3N2
Eurasian swine Lineage
http://www.who.int/csr/resour
ces/publications/swineflu/WHO
_OFFLU2009_05_15.pdf
First Detected in 1998
H3N2 Double Reassortant
(Swine/Human)
H3N2 Triple Ressortant
(Swine/Avian/Human)
H1N1
(Swine)
?
PB2
PB2 PB2 PB2
PB1
PB1 PB1 PB1 “Large gaps in the historical global animal PA
PA PA PA influenza surveillance data. “
HA
HA HA HA
NP
NP NP NP
NA
NA NA NA
M
M M M
NS
NS NS NS
Pandemic Influenza A(H1N1) 09
H1N2 Triple Ressortant H1N1 Triple Reassortant
Virus Quadruple Reassortant
(Swine/Avian/Human) (Swine/Avian/Human)
(North American and Eurasian
Swine/Avian/Human)
PB2 PB2
PB1 PB1 PB2
PA PA PB1
HA HA PA
NP NP HA
NA NA NP
M M NA
NS NS M
8/2/2009 NS
152
8/2/2009 153
Phylogenetic Analysis of Sequences of all Genes
Identified in A/California/04/2009
• Novel Swine-Origin Influenza A (H1N1) Virus Investigation
Team 10.1056/NEJMoa0903810, May 7, 2009
NML Winnipeg, Canada
8/2/2009 154
Has Breakthrough!
Emergence of a Pandemic (H1N1) 2009 Virus in
Humans Using “BLAST”
Supplement to: Novel Swine-Origin Influenza A (H1N1) Virus Investigation Team. Emergence of a novel swine origin
influenza A (H1N1) virus in humans. N Engl J Med 2009;361. DOI: 10.1056/NEJMoa0903810
(BLAST) Basic Local Alignment Search Tool
8/2/2009 155
“Molecular Clock” Method
in Estimation of the
Origins of Pandemic (H1N1) 2009
• Britons Andrew Rambaut of the University of Edinburgh and Oliver Pybus of Oxford University, and
Yi Guan of the University of Hong Kong examined the genetic sequence of the Pandemic Influenza
A(H1N1) 09 Virus
The international team used a "molecular clock" method to compare the current virus to its
relatives and estimate its age based on the mutations.
– This gives a rough idea of when the new virus is likely to have emerged!
"We found that the common ancestor of the (new H1N1) outbreak and the closest related swine viruses
existed between 9.2 and 17.2 years ago, depending on the genomic segment, hence the ancestors of the
epidemic have been circulating undetected for about a decade,"
8/2/2009 156
“Pandemic (H1N1) 2009”
CDC Influenza Laboratory Images
• Images below of the newly identified H1N1
influenza virus were taken in the CDC
Influenza Laboratory.
All Images courtesy of CDC/C. S. Goldsmith and A. Balish.
8/2/2009 157
“Pandemic (H1N1) 2009”
Laboratory Images
• This preliminary negative stained transmission electron
micrograph depicts some of the ultrastructural morphology of
the A/CA/4/09 swine flu virus. Courtesy of CDC/ C. S. Goldsmith
and A. Balish.
• This preliminary negative stained transmission electron
micrograph depicts some of the ultrastructural morphology of
the A/CA/4/09 swine flu virus. Courtesy of CDC/ C. S. Goldsmith
and A. Balish.
• Comparison to;
• Swine influenza virus. Colorized transmission electron
micrograph (37,800X) of the A/New Jersey/76 (Hsw1N1) virus
under plate magnification. Image taken during the virus' first
developmental passage through a chicken egg. Courtesy of the
CDC/Dr. E. Palmer; R.E. Bates.
• Negative stained transmission electron micrograph of
recreated 1918 influenza virions. Courtesy of CDC/ Dr. Terrence
Tumpey
E-medicine resource
8/2/2009 158
“Pandemic (H1N1) 2009”
Epidemiological Risk Factors
• Epidemiological risk factors that should
raise suspicion of include:
• Close contact to a confirmed case of
pandemic (H1N1) 2009 virus
virus infection while the case was ill
• Recent travel to an area where there
are confirmed cases of pandemic
(H1N1) 2009 virus
• Close contact: having cared for, lived
with, or had direct contact with
respiratory secretions or body fluids of
a probable or confirmed case of
pandemic (H1N1) 2009 virus
8/2/2009 159
Pandemic Influenza A(H1N1) 09 Virus
Specific Investigational Triggers
• The primary focus of early investigation is to trigger the initial
investigation i:
• Clusters of cases of unexplained ILI or AFI acute lower respiratory disease
• Severe, unexplained respiratory illness occurring in one or more health
care worker(s) who provide care for patients with respiratory disease
• Changes in the epidemiology of mortality associated with the occurrence
of ILI or lower respiratory tract illness, an increase in deaths observed from
respiratory illness or an increase in the occurrence of severe respiratory
disease in previously healthy adults or adolescents
• Persistent changes noted in the treatment response or outcome of severe
lower respiratory illness
8/2/2009 160
“Pandemic (H1N1) 2009”
Infectious Period:
• The infectious period for a confirmed case of swine
influenza A (H1N1) virus infection is defined as 1 day
prior to the case’s illness onset to 7 days after onset or
when symptoms cease
• The swine flu in humans is most contagious during the
first five days of the illness although some people,
most commonly children, can remain contagious for
up to ten days ,immunocompromised up to 0-3
months has been documented
• Remember: if signs and symptoms of influenza persist
past this incubation period consider yourself
contagious
• May 20 2009 : WHO Technical Consultation on the
severity of disease Report 20,05 May Teleconferencex
• Ranging between
– 1–5 days (Spain)
– 4–6 days (UK) Image courtesy of the CDC/Dr.
– 2–7 days (US ) Erskine L. Palmer; Dr. M. L. Martin.
8/2/2009 161
Pandemic Influenza A(H1N1) 09 Virus
Transmission:
• Direct and indirect contact
– Pig to human
• asymptomatic carrier pigs
– Human to human
– Human to Pig
• Droplet transmission
• Aerosol generating procedures (AGPs)
• Not transmissible by consumption of
pork
8/2/2009 162
Pandemic Influenza A(H1N1) 09 Virus
Human Signs and Symptoms:
Pandemic A(H1N1) 2009 Virus Exacerbation of underlying
chronic medical conditions
Includes:
• Upper respiratory tract
disease (sinusitis, otitis media,
croup) lower respiratory tract
disease (pneumonia,
Fever (greater bronchiolitis, status
asthmaticus)
than 100°F or Cardiac (myocarditis,
37.8°C) pericarditis)
Musculoskeletal (myositis,
EU > 38 °C rhabdomyolysis)
*NOTE: Some people, Neurologic (acute and post-
such as the elderly, infectious encephalopathy,
and people who are encephalitis, febrile seizures,
immunocompromised, status epilepticus)
may not develop a Toxic shock syndrome
fever. Secondary bacterial
- Diarrhoea
pneumonia with or without
sepsis
8/2/2009 163
Pandemic (H1N1) 2009
ECDC Report of Specific Clinical Signs and Symptoms by
Systems Update June, 17, 2009
Frequency of Number of cases % Percentage
symptoms (n=879)
Generalised
Fever or history of fever 653 74%
Headache 364 41%
Muscle pain 336 38%
Joint pain 195 22%
Respiratory
Dry cough 465 53%
Productive cough 157 18%
Sore throat 354 40%
Runny nose 295 34%
Sneezing 165 19%
Shortness of breath 103 12%
Gastro-intestinal
Diarrhoea 101 11%
Vomiting 84 10%
Nausea 114 13%
Other
Conjunctivitis 45 5%
Nose bleed 25 3%
Altered consciousness 12 1%
Other (various) 386 44%
8/2/2009 164
Pandemic (H1N1) 2009
High Risk Groups:
• There is sufficient data available at
this point to determine who is at
higher risk for complications of
Pandemic (H1N1) 2009 virus
infection
• Considered higher risk for
pandemic (H1N1) 09 virus Five-year-old Edgar Hernandez,
known as "patient zero" survived
complications if: the earliest documented case of
swine flu. “April 2 2009”
8/2/2009 165
Groups at High Risk for Complications From
Pandemic (H1N1) 2009 Virus
• High Risk groups include: • Chronic liver disease
– Cirrhosis
• Age – Inflammatory bowel disease
– Persons aged 65 years or older • Chronic metabolic disorders
– Infants aged 12–24 months; Children <5 (children <2 – Diabetes mellitus requiring insulin or oral
are at particular risk of influenza) hypoglycaemic drugs
• Pregnancy – Sickle cell anaemia and other haemoglobinopathies
– Especially during third trimester and four weeks post- • Immunosuppression and malignancy due to
partum disease or treatment
• Bariatrics – Asplenia or splenic dysfunction
– BMI ≥40 – HIV infection at all stages
• Chronic respiratory disease – Malignancy
– Asthma requiring continuous or repeated use of – Patients undergoing chemotherapy or transplant
inhaled or systemic steroids or with previous leading to immunosuppression
exacerbations requiring hospital admission – Individuals on or likely to be on systemic steroids for
– Children who have previously been admitted to more than a month at a dose equivalent to
hospital with lower respiratory tract disease prednisolone at 20mg or more per day (any age) or for
– Such as cystic fibrosis in children or chronic obstructive children under 20kg a dose of 1mg per kg per day
pulmonary disease in adults – Diseases that requiring long-term aspirin therapy
• Chronic heart disease rheumatoid arthritis or Kawasaki disease
– Hemodynamically significant cardiac disease • Chronic neurological disease
– Congenital heart disease – Neuromuscular disorders
– Hypertension with cardiac complications – Seizure disorders
– Chronic heart failure – Cognitive dysfunction that may compromise the
– Individuals requiring regular medication and/or follow handling of respiratory secretions
up for ischaemic heart disease
• Chronic renal disease
Not an inclusive list!
166
8/2/2009
High Risk Groups Research
in Europe, Ireland and North America
Defining the “Pandemic Influenza
2009 High” Risk Groups
8/2/2009 167
Pandemic (H1N1) 2009
According to ECDC Surveillance Report
• Reported number of cases of influenza A(H1N1)v infection, travel
association and hospital admission, 29 EU/EEA countries, as of 17, July,
2009
http://www.ecdc.europa.eu/en/files/pdf/Health_topics/
8/2/2009 090717_Influenza_A(H1N1)_Analysis_of_individual_data
_EU_EEA-EFTA.pdf 168
Pandemic (H1N1) 2009
According to ECDC Surveillance Report
• Distribution of confirmed cases of A(H1N1)v infection by
date of onset (n=5894 and date of reporting (n=13908),
EU/EEA countries, as of 13, July, 2009
8/2/2009 169
Pandemic (H1N1) 2009
According to ECDC Surveillance Report
• Distribution of travel-related and domestic individual
case reports of influenza A(H1N1)v infection, by date of
onset and area of travel, 28 EU/EEA countries, 11 April
– 13 July 2009 (n=5768)
8/2/2009 170
Pandemic (H1N1) 2009
According to ECDC Surveillance Report
• Distribution by age and gender of
individual case reports of influenza
A(H1N1)v infection, 28 EU/EEA
countries, as of 13 July (n=7406)
• Distribution by age and gender of
individual case reports of influenza
A(H1N1)v infection, 28 EU/EEA
countries, as of 13 July 2009 (n=7406)
8/2/2009 171
Pandemic (H1N1) 2009
High Risk Group Age According to ECDC
• Distribution by age and travel status of individual
case reports of influenza A(H1N1)v infection, 28
EU/EEA countries, as of 13 July 2009 (n=8378)
• Distribution by age and travel status of individual
case reports of influenza A(H1N1)v infection, 28
EU/EEA countries, as of 13 July 2009 (n=8400)
8/2/2009 172
Pandemic (H1N1) 2009
Predefined Underlying conditions According to ECDC
• Number of influenza A(H1N1)v cases reported with predefined underlying
conditions, 28 EU/EEA countries, as of 6 July (n=7681)
8/2/2009 173
Regional Influenza A(H1N1)v Activity
by HSE-Area
• Map of influenza activity by HSE area as of July, 26, 2009 (n=217)
HSE-North West - 6 HSE-NE- 26
HSE-Midlands - 8
HSE-West- 21
HSE-Midlands West- 17
HSE-South- 19 HSE-South East- 18 HSE-East - 102
HSE Areas of Confirmed Cases
Of Pandemic Influenza a(H1N1) 09 Virus
• Summary of all HSE reported confirmed cases of influenza A(H1N1)v 09
– Number and rate per 100,000 population for confirmed cases by all HSE areas
As of July, 26, 2009 # of Pandemic Influenza Clinical attack Rate/100,000
(n=217) A(H1N1)v Confirmed Cases
HSE-East 102 6.8
HSE-Midlands 8 3.2
HSE-Midlands West 17 4,7
HSE-North East 26 6.6
HSE-North West 6 2.5
HSE-South East 18 3.9
HSE-South 19 3.1
HSE-West 21 5.1
Total 217 5.1
Pandemic Influenza A(H1N1)v
Transmission Modes
• Number of confirmed cases of influenza A(H1N1)v by mode of
transmission and week of notification (n=217)
– 64 percent (n=139) were travel related (imported)
– 8% (n=17) were contacts of an imported case (secondary import related)
– 2% (n=4) were linked to a non‐imported case (tertiary indigenous)
– 5% (n=11) had no history of travel and no known links to other confirmed
cases (sporadic indigenous)
Pandemic Influenza A(H1N1)v 09
Confirmed Cases By Gender and Age
• Number of confirmed cases of influenza A(H1N1)v and notification
rate per 100,000 population by age group (n=217)
– 110 were female (50.7%)
– 107 were male (49.3%).
– The median age of cases was 23 years (range: 0‐73 years)
– 66% of cases were less than 30 years of age
CIDR-2 Notifications of Influenza
• Shows the number of CIDR notifications of influenza by type and
week of notification compared to sentinel GP ILI consultation rates
per 100,000 population during the 2008/2009 and the summer
2009 influenza seasons.
8/2/2009 178
Early Epidemiology of
Pandemic Influenza A(H1N1)v 09 In Ireland (n-29)
• In Ireland, 29 confirmed cases of
influenza A (H1N1) infection have been
reported since week 18 2009
• Age and Sex
Of the 29 cases reported to date, 17 are
female (58.6%) and 12 are male (41.4%)
• The female to male sex ratio is 1.4:1.0
• The median age of cases is 27.0 years
(range: 1-73 years).
• The mean age is 27.7 years
8/2/2009 July, 7, 2009 Article 180
Early Epidemiology of
Pandemic Influenza A(H1N1)v 09 In Ireland (n-29)
• Younger age groups appear to be at greatest of illness. Among those affected to date, only one case, aged greater
than 65 years was noted to have underlying co-morbidities. This patient was hospitalised due to a secondary chest
infection. Underlying chronic disease have been reported in two (6.9%) cases. These include: type 1 diabetes
mellitus, chronic obstructive pulmonary disease, heart disease and chronic liver disease. Figure 3 shows the
number of confirmed influenza A(H1N1) cases by symptom.
8/2/2009 July, 7, 2009 Article 181
“Pandemic (H1N1) 2009”
United Kingdom Weekly Surveillance Report
• As of July 23 2009
• GP consultation rates have risen sharply
over the last week in England.
• HPA estimates that there were 100,000
new cases of swine flu in England last
week (range 60,000 - 140,000
• The under-5s and 5-14 year olds are the
age groups predominantly affected,
with the over 65s continuing to show
much lower rates
• The majority of cases continue to be
mild
8/2/2009 182
“Pandemic (H1N1) 2009”
United Kingdom “National Flu Service” Triage System
• New influenza surveillance triage telephone system goes down in
England for 2 hours due to the number of hits /hr (Seen in Red!)
Initial
number of hits increased
to 9,3 million/hr or 2600 hits/secs
System failed at 9000 hits/sec
Back running within 2 hrs!
8/2/2009 183
Case study of
High Risk Groups In Canada
• Laboratory-confirmed Canadian
Pandemic (H1N1) 2009 cases,
hospitalized cases, cases admitted to
ICU and deaths with core information
available, reported to the Public
Health Agency of Canada as of 25
July 2009
• Highest hospitalization rate is among
the cases below 1 year of age (25.1 High Risk Age Mortality rate
per 100,000) followed by the cases Groups
between 1 and 4 years of age (10.0 <1 year 0.27 per 100,000
per 100,000). >65 0.33 per 100,000
• Pregnant women within the severe
cases (21.9% for hospitalized cases
and 33.3% among deaths)
8/2/2009 184
Pandemic (H1N1) 2009
Mexico, United Sates, Canada Age Early Report Summary:
In Mexico In United States:
As of 20 May 2009, 16:30 AM ET, 48
states of the United States have
reported a total of 5,764confirmed
cases including 247 hospitalizations
and 8 deaths.
Median age: 17 years, range 1 month-
87 years
Gender: 51% female, 49% male
Underlying medical conditions (n=44):
63% (median age: 18 years)
Median time from illness onset to
hospital admission (n=32): 4 days
(range: 1-13 days)
Median length of hospital stay (n=32):
5 days (range 2-31)
In Canada: As of May 28, 2009, the average
age reported is 22 years or younger (median:
17 years; range: <1 – 86 years).
In Europe: Median age 33
8/2/2009 185
Pandemic (H1N1) 2009
México, United Sates, Canada
Gender and Age Early Report Summary
• The Mexican Ministry of Health published an epidemiological update on
May 7, 2009, on their website:
• Out of the 1204 confirmed cases studied, 49.5% are females and 72% are
in persons under the age of 29 years of age.
• The Public Health Agency of Canada reported epidemiological information
of the confirmed cases on May 20, 2009
– The majority of the cases (97%) are under the age of 50
– The median age of Canadian cases is 22 years
– As of May 20, 2009, half the cases are 21 years of age or younger (median: 21
years; range: <1 – 86 years)
– The majority of cases are linked to travel to Mexico
8/2/2009 186
Pandemic (H1N1) 2009
General Diagnosis
• A Confirmed case of Pandemic
Influenza A(H1N1) 09 Virus infection is
defined as an individual with
laboratory confirmed Pandemic
(H1N1) 2009 virus infection by one or
more of the following tests:
• Real‐time RT‐PCR ICycler® from
• Viral culture BioRad
• Four‐fold rise in Pandemic Influenza
A(H1N1) 09 Virus specific neutralizing
antibodies
8/2/2009 187
WHO Case Definitions to be Used For Investigations
of Pandemic (H1N1) 2009 Virus Cases
• Clinical case description
• Acute febrile respiratory illness (fever >38°C ) with the spectrum of disease from
influenza‐like illness to pneumonia.
• 1. A Confirmed case of swine influenza A(H1N1) virus infection is defined as an
individual with laboratory confirmed swine influenza A(H1N1) virus infection by
one or more of the following tests*:
– real‐time RT‐PCR
– viral culture
– four‐fold rise in swine influenza A(H1N1) virus specific neutralizing antibodies.
• 2. A Probable case of swine influenza A(H1N1) virus infection is defined as an
individual with an influenza test that is positive for influenza A, but is unsubtypable
by reagents used to detect seasonal influenza virus infection
OR
• A individual with a clinically compatible illness or who died of an unexplained
acute respiratory illness who is considered to be epidemiologically linked to a
probable or confirmed case.
8/2/2009 188
EU Case Definition
Pandemic (H1N1) 2009 Virus April,30,2009
• Clinical criteria • At least one of the following three in the
• Any person with one of the following seven days before disease onset:
three: • — a person who was a close contact to a confirmed case
• — fever > 38 °C AND signs and symptoms of novel influenza A(H1N1) virus infection while the case
of acute respiratory infection, was ill,
• — pneumonia (severe respiratory illness), • — a person who has travelled to an area where
sustained human-to-human transmission of novel
• — death from an unexplained acute influenza A(H1N1) is documented,
respiratory illness.
• — a person working in a laboratory where samples of
• Laboratory criteria the novel influenza A(H1N1) virus are tested.
• At least one of the following tests:
• — RT-PCR,
• Case classification
• — viral culture (requiring BSL 3 facilities),
• A. Case under investigation Any person meeting the
• — four-fold rise in novel influenza virus clinical and epidemiological criteria.
A(H1N1) specific neutralising antibodies
(implies the need for paired sera, from
• B. Probable case
acute phase illness and then at
convalescent stage 10-14 days later • Any person meeting the clinical AND epidemiological
minimum). criteria AND with a laboratory result showing positive
influenza A infection of an unsubtypable type.
• Epidemiological criteria
• C. Confirmed case
• Any person meeting the laboratory criteria for confirmation.
8/2/2009 189
NDSC Case Definition Influenza
(Influenza A and B virus) (EU)
• Clinical description
• Clinical picture compatible with influenza i.e. sudden onset of disease,
cough, fever > 38 °C, muscular pain and/or headache.
• Laboratory criteria for diagnosis
• One of the following:
– Detection of influenza antigen, or influenza virus specific RNA
– Isolation of influenza virus
– Demonstration of a specific serum antibody response to influenza A or B (four
fold or greater rise).**
• Case classification
• Possible: Clinically compatible case with epidemiological link*
• Probable: N/A Case Definitions for Notifiable Diseases
Infectious Diseases (Amendment)
• Confirmed: Clinical case that is laboratory confirmed. (No. 3) Regulations 2003
(SI No. 707 of 2003)
• Note: Influenza of a new or re-emergent subtype is defined as influenza
caused by a novel or re-emerging influenza virus which is capable of
infecting humans and causing human illness, and to which a large
8/2/2009 190
proportion of the human population has little or no immunity.
Reporting Suspect
Influenza A (H1N1) Virus Infection
• Clinicians must contact their national
lead agency /public health
department to report suspected
cases of Pandemic Influenza
A(H1N1) 09 Virus infection and to
obtain information on what clinical
and epidemiological data to collect
and specimen shipment protocols in
their region.
1.Health and Safety regulations on biological hazards (Safety, Health and Welfare at
Work Act 2005 (No. 10 of 2005)
2.European Agreement concerning the International Carriage of Dangerous Goods by
road (ADR) Regulations (2007 edition).
3.S.I. No 29 of 2004 - Carriage of Dangerous Goods by Road Regulations, 2004.
8/2/2009 191
Influenza Activity Index
Irish Influenza Activity Code, Name and Description
Index Index Name Index Description*
Code
Update July 31 2009
Map of influenza activity
0 No Report No reports received. by HSE area during week
20 2009
1 No Activity No ILI or laboratory confirmed influenza cases and no
influenza/ILI outbreaks in a HSE-Health Area.
2 Sporadic Activity Isolated case(s) of ILI or laboratory confirmed influenza case(s) in a
HSE-Health Area, or an influenza/ILI outbreak in a single nstitution.
3 Localised Activity Increases in ILI in local areas (such as a city, county, or district) within
a HSE-Health Area, or outbreaks in two or more institutions within an
area, with laboratory confirmed cases of influenza infection. Levels of
activity in the remainder of the HSE-Health Area would be sporadic or
have no activity
4 Regional Activity Increases in ILI in one or more regions with a population
comprising less than 50% of the HSE-Health Area’s total http://www.hpsc.ie/hpsc/A-
population, with laboratory confirmed influenza cases in the ffected Z/EmergencyPlanning/AvianPandemicIn
region(s). Levels of activity in the remainder of the HSE-Health Area
would be sporadic or have no activity. fluenza/SwineInfluenza/Surveillance%2
0Reports/File,3749,en.pdf
5 Widespread activity Increases in ILI in one or more regions with a population
comprising 50% or more of the HSE-Health Area’s total
population, with laboratory confirmed influenza infections
Epi-insight article July, 31, 2009
(N-13)
8/2/2009 192
Influenza-like illness (ILI) –Definition
Community Surveillance of Clusters/Outbreaks
• Influenza-like illness (ILI) -definition for interim
surveillance of clusters/outbreaks
• Three or more cases of ILI arising within the
same 72 hour period which meet the same
clinical case definition and where an
epidemiological link can be established
• ILI symptoms include:
– Acute onset of fever (temperature≥38oC)
– OR history of fever
– AND flu-like illness (two or more of the following
symptoms: cough, sore throat, myalgia, headache,
rhinorrhea or vomiting/diarrhoea)
Influenza-like
Illness/Influenza/Influenza A
(H1N1)
Outbreak Reporting Form
ILI GP consultation rates per 100,000 population, baseline ILI threshold rate and number of positive influenza
specimens detected by the NVRL by influenza week and season
8/2/2009 193
Algorithm for the Primary Care
Management
• As of July, 29, 2009 the Interim algorithm
for the PRIMARY CARE Management of
Persons who may have Influenza
A(H1N1)v will be used during WHO phase
6 -stage 2 of Irelands mitigation strategy !
Letter From Dr
Kevin Kelleher
National
Director Health
Protection
July, 29, 2009
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineI
nfluenza/AdviceforHealthProfessionals/GPs/File,3892,e
n.pdf
8/2/2009 194
DOHC FAQs for Antiviral Treatment
• July 16 2009
• Who will receive anti-viral treatment and where is it available?
– Patients who appear to have severe symptoms
– Patients who are in defined high risk groups
– All suspected cases who have a household contact in a very high risk group
• Who are those considered to be in a high risk group and needing
treatment?
• People who have: chronic lung, heart, kidney, liver, or neurological disease; people
whose immune system is reduced by disease or medications; people with diabetes
mellitus; people aged 65 years and older; children under 5 (children under 2 are at
particular risk of influenza); people on medication for asthma, severely obese
people (body mass index more than 40) and pregnant women.
• Who are the contacts of cases who will require treatment even though
they do not have the illness?
– Pregnant women
– Those on treatment for asthma
– Those who are very obese (Body Mass Index >40)
http://www.dohc.ie/issues/swine_influenza/faqs.pdf?direct=1
8/2/2009 195
Groups at High Risk for Complications From
Pandemic (H1N1) 2009 Virus
• High Risk groups include: • Chronic liver disease
– Cirrhosis
• Age – Inflammatory bowel disease
– Persons aged 65 years or older • Chronic metabolic disorders
– Infants aged 12–24 months; Children <5 (children <2 – Diabetes mellitus requiring insulin or oral
are at particular risk of influenza) hypoglycaemic drugs
• Pregnancy – Sickle cell anaemia and other haemoglobinopathies
– Especially during third trimester and four weeks post- • Immunosuppression and malignancy due to
partum disease or treatment
• Bariatrics – Asplenia or splenic dysfunction
– BMI ≥40 – HIV infection at all stages
• Chronic respiratory disease – Malignancy
– Asthma requiring continuous or repeated use of – Patients undergoing chemotherapy or transplant
inhaled or systemic steroids or with previous leading to immunosuppression
exacerbations requiring hospital admission – Individuals on or likely to be on systemic steroids for
– Children who have previously been admitted to more than a month at a dose equivalent to
hospital with lower respiratory tract disease prednisolone at 20mg or more per day (any age) or for
– Such as cystic fibrosis in children or chronic obstructive children under 20kg a dose of 1mg per kg per day
pulmonary disease in adults – Diseases that requiring long-term aspirin therapy
• Chronic heart disease rheumatoid arthritis or Kawasaki disease
– Hemodynamically significant cardiac disease • Chronic neurological disease
– Congenital heart disease – Neuromuscular disorders
– Hypertension with cardiac complications – Seizure disorders
– Chronic heart failure – Cognitive dysfunction that may compromise the
– Individuals requiring regular medication and/or follow handling of respiratory secretions
up for ischaemic heart disease
• Chronic renal disease
Not an inclusive list!
196
8/2/2009
Public Health Management of Pandemic (H1N1)
2009 Virus (Mitigation Phase)
• Public Health:
– Mandatory reporting to DPH/MOH of influenza-like
illnesses and acute febrile respiratory illnesses
– Clinically contact tracing rather than laboratory tracing
– Public health intervention to general treatment
intervention
– No contact tracing
– Contact tracing for the defined high risk groups with
routine GP homecare referrals and follow up by Public
Health Nurse Passive Screening
Poster placed in
– Promotion of Influenza education on vaccinations,
hygiene etc hospital !
– Encourage assessment, planning, implementation and
evaluation of Influenza Care Centres (ICC) within the
Republic of Ireland for upcoming vaccination season to
decrease surge capacity at hospitals and GP offices
8/2/2009 197
Influenza A(H1N1)v
Mitigation Case Surveillance Form
• Health Protection Surveillance Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
• See Website for download for
clinicians
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza
/SwineInfluenza/AdviceforHealthProfessionals/
PublicHealth/Surveillance/File,3606,en.pdf
July 31 2009 1-3 pages
8/2/2009 198
Mitigation Surveillance Form for High Risk
Contacts of the Influenza A(H1N1)v
• Health Protection Surveillance Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
• See Website for download for clinicians
• http://www.ndsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInflue
nza/AdviceforHealthProfessionals/PublicHealth/File,3607,e
n.pdf
“No longer current during mitigation!”
1-7pages
8/2/2009 199
Pandemic (H1N1) 2009
Dispatchers Guide
Infection Prevention and Control Guidance for
the Emergency Dispatcher
• Recommendations for 999
• It is important for the Emergency Operators to
question callers to ascertain if there is anyone at
the incident location who is possibly afflicted by
the Pandemic (H1N1) 2009,to communicate the
possible risk to EMS personnel prior to arrival,
and to assign the appropriate EMS resources
• Emergency Operators should review existing
medical dispatch procedures and coordinate any
modifications with their EMS medical director
and in coordination with their local department http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/Avian
of public health PandemicInfluenza/SwineInfl
uenza/AdviceforHealthProfes
sionals/AmbulanceStaff/File,
8/2/2009 3601,en.pdf 200
Pandemic (H1N1) 2009
Dispatchers Guide
Infection Prevention and Control Guidance for
the Emergency Dispatchers
Interim recommendations:
• Call takers should screen all callers for any
symptoms of acute febrile respiratory illness.
– Callers should be asked if they, or someone at the
incident location, has had nasal congestion,
cough, fever or other flu-like symptoms
– If the emergency operator call taker suspects a
caller is noting symptoms of acute febrile
respiratory febrile illness, they should make sure
any first responders and EMS personnel are aware
of the potential for “acute febrile respiratory
illness” before the responders arrive on scene
8/2/2009 201
Adapted from “Dispatchers Guide to CBRNE”
Confirmed Pandemic (H1N1) 2009 Virus
in The Geographic Area
• Step 1: Address scene safety:
– If emergency operator advises potential for acute febrile respiratory illness
symptoms on scene, EMS personnel should don PPE for suspected cases of
swine-origin influenza prior to entering scene.
– If emergency operator has not identified individuals with symptoms of acute
febrile respiratory illness on scene, EMS personnel should stay more than 6
feet away from patient and bystanders with symptoms and exercise
appropriate routine respiratory droplet precautions while assessing all
patients for suspected cases of swine-origin influenza.
• Step 2:
• Assess all patients for symptoms of acute febrile respiratory illness (fever
plus one or more of the following: nasal congestion/ rhinorrhea, sore
throat, or cough).
– If no symptoms of acute febrile respiratory illness, provide routine EMS care.
– If symptoms of acute febrile respiratory illness, don appropriate PPE for
suspected case of swine-origin influenza if not already on.
8/2/2009 202
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Guidance for
the Ambulance Service
• If the ambulance service is informed that a patient is
suspected or confirmed to have Pandemic Influenza A(H1N1)
09 Virus the following precautions should be taken:
• 1.On arrival to the house/healthcare facility
– Ambulance staff to decontaminate hands (alcohol gel)
– Routine care (Infection control precautions for caring for a patient with
suspected or confirmed influenza A (H1N1)v)
– Wear surgical mask, plastic apron/gown, gloves (& goggles if splash/spray
risk)
– Aerosol generating procedures (refer to Aerosol Generating Procedure
Document)
– FFP2 or FFP3 mask (fit check to ensure a good seal), goggles, long sleeved
disposable gown and gloves
• Inform the hospital of admission of potentially infectious person
Before leaving the house/healthcare facility
• Request patient to wear a surgical mask and advise of respiratory An ambulance driver
hygiene and cough etiquette wearing a face mask
– (education leaflet if possible) drives in Hospital La Fe in
• A patient with suspected or confirmed flu should not travel with any Valencia, Spain
other patients
8/2/2009 203
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Guidance for
the Ambulance Service
In ambulance:
• Change gloves and
decontaminate hands after
every patient procedure
• Use single use or single patient
use medical equipment where
possible
• Use disposal linen if available
8/2/2009 204
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Guidance for
the Ambulance Service
• Arrival to hospital
• Ensure arrangements in place for receipt of the
patient before the patient leaves the ambulance
• Transfer patient to the care of hospital staff
• Remove PPE in the following order
1. Gloves (avoid touching the outside of the gloves)
2. Decontaminate hands
3. Eye wear (if applicable)
4. Mask Remove mask by breaking the ties.
5. If ties are elastic grasp and lift ties from behind your
head and pull off mask away from your face . Avoid
touching the front of the mask & use ties to discard
6. Discard all PPE into healthcare risk waste
7. Decontaminate hands
8/2/2009 205
Pandemic Influenza A(H1N1) 09 Virus Infection
Prevention and Control Guidance for the Ambulance
Service
• Before ambulance is used again
• Cleaning and disinfecting(wear appropriate PPE while cleaning)
– Surfaces (stretcher, chair, door handles etc) should be cleaned with a detergent
and a hypochlorite solution 1000pmm
• Laundry
– Place reusable blankets in an alginate bag, then into a red laundry bag and sent
for laundry
• Medical equipment
– Follow manufacturer’s instructions for cleaning/disinfecting reusable
equipment
• Management of waste
– All masks and any waste contaminated with blood or body fluid (including
respiratory secretions) should be disposed of as Healthcare Risk waste
– Management of sharps – as per Standard Precautions
– Management of blood and body fuids – as per Standard Precautions
8/2/2009 206
“Pandemic (H1N1) 2009”
Who's Summary of Clinical Guidelines
Modalities Strategies
Antibiotics In case of pneumonia, empiric treatment for community acquired
pneumonia (CAP) per published guidelines pending microbiologic results
(e.g. 2-3 days); tailored therapy thereafter if pathogen(s) identified.
Antiviral therapy If treatment needed, oseltamivir or zanamivir. The new influenza A (H1N1)
virus is currently resistant to amantadine and rimantadine.
Corticosteroids Moderate to high dose steroids are NOT recommended. They are of
unproven benefit and potentially harmful.
Infection control Standard plus Droplet Precautions. For aerosol-generating procedures use
particular respirator (N95, FFP2 or equivalent), eye protection, gowns,
gloves, and an airborne precaution room, that can be naturally or
mechanically ventilated, per WHO guidance
NSAIDS, Paracetamol or acetaminophen given orally or by suppository. Avoid
antipyretics administration of salicylates (aspirin and aspirin containing products) in
children and young adults (< 18 years old) due to risk of Reye’s syndrome.
Oxygen therapy Monitor oxygen saturation and maintain SaO2 over 90% (95% for pregnant
women) with nasal cannulae or face mask.
8/2/2009 207
“Pandemic (H1N1) 2009” Virus Triage
Health Care Setting Guidelines Resource
8/2/2009 208
HPSC Adaptation from
WHO- “Patient Care Checklist”
Pandemic (H1N1) 2009
June, 29, 2009
June 2009 July, 16, 2009
July, 29, 2009
HPSC being proactive and
showing continuous
improvement through
8/2/2009 209
innovation !
Pandemic Influenza A(H1N1) 09 Virus
Advice to General Practitioners on
Management of a Possible Case Resources
• Update July, 16, 2009
• Health Protection
Surveillance Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
• See Website for download
for clinicians or hit hyperlink
during slide show! http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInflu
enza/SwineInfluenza/AdviceforHealthProfe
ssionals/GPs/File,3636,en.pdf
8/2/2009 210
Pandemic Influenza A(H1N1) 09 Virus
General Practitioners Algorithm and
Infection Control Resources
Update July, 29, 2009
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInf
luenza/SwineInfluenza/AdviceforHealthP
rofessionals/GPs/File,3636,en.pdf
8/2/2009 211
Pandemic Influenza A(H1N1) 09 Virus
Advice to General Practitioners on
Management in context to “Mitigation”
July, 15,2009 Letter from DOHC July, 29,2009 Letter from DOHC
http://www.hpsc.ie/hpsc/A-
http://www.dohc.ie/issues/swine_influenza
Z/EmergencyPlanning/AvianPandemicInfluen
/letter_med_pract_140709.pdf?direct=1 za/SwineInfluenza/AdviceforHealthProfession
als/GPs/File,3869,en.pdf
8/2/2009 212
Interim Algorithm for the Emergency Department
Management of Adults Who May Have Influenza A(H1N1)v
Update as of
July, 30, 2009
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealt
hProfessionals/HospitalClinicians/File,3894,en.pdf
Interim Algorithm for the Emergency Department
Management of Children Who May Have Influenza A(H1N1)v
Update as of
July, 30, 2009
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/Ad
viceforHealthProfessionals/HospitalClinicians/File,3895,en.pdf
Pandemic Influenza A(H1N1)
Triage Tents
• Influenza Triage
Tent
• East Palo Alto, CA
• Interior – Influenza
Triage Tent outside
emergency
department
8/2/2009 215
Pandemic (H1N1) 2009
Triage Initial GP Patient Management
• Should be managed as follows:
• Physical barrier (i.e. window or plexiglass barrier) or the
receptionist should maintain a 2 metre (6 foot) distance from all
patients whenever possible
• In settings where such a separation is not possible, healthcare
workers are advised to maintain whatever separation is feasible
• If there is no barrier, and a 2 metre (6 foot) distance cannot be
achieved, a fit tested FFP 2-3 respirator and eye protection
should be worn by the receptionist
• Alcohol-based hand rub (ABHR) should be readily available for
both staff and patients
• Patient should be asked to perform hand hygiene using an ABHR
and given a surgical mask to put on covering their nose and
mouth
• Patient should be placed in a separate area of the office (i.e.
examination room). If an examination room or separate room is
not available, the patient should remain masked
• Provide hands-free garbage and laundry receptacles
• Remove magazines and toys from the waiting rooms to reduce
potential contact exposures
8/2/2009 216
Pandemic (H1N1) 2009
Triage Health Care Setting Screening
• All patients who present to a health care setting should be
screened for fever and respiratory symptoms.
• This should include:
• Passive screening: visual alerts posted at the entrances to all
health care settings asking patients to report whether they
have fever and any new or worsening respiratory symptoms,
and
• Active screening: At first contact, staff asks about fever and
respiratory symptoms
• Respiratory symptoms include cough, sore throat, coryza
(runny nose), and myalgias (general body aches)
• Standard, contact and droplet precautions for clinicians
• Additional precautions
Influenza-like Illness/Influenza/Influenza A (H1N1)
Outbreak Reporting Form
8/2/2009 217
Pandemic (H1N1) 2009
Triage Health Care Setting Guidelines
• The following infection control practices are
indicated when assessing patients with fever
and respiratory symptoms:
• Before a clinical assessment:
• Ensure patient is still wearing a surgical mask
• Perform hand hygiene (alcohol based hand
rub or soap and water) before and after
patient assessment
• Put on gloves
• A gown is needed only when there is a risk of
clothing or skin contamination (such as when
examining young children who may have
difficulty controlling their secretions)
• Consider most appropriate respiratory
protection
8/2/2009 218
Pandemic (H1N1) 2009
Triage Health Care Setting Guideline
• BEFORE EVERY PATIENT CONTACT
• Clean hands (wash with soap and water for at least 15 seconds or use alcohol
gel/rub containing at least 60% alcohol)
• Put on plastic apron/gown, surgical mask, gloves (and goggles if there is risk of
exposure to splashes)
• Change gloves and clean hands between patients and between care
procedures
• Clean and disinfect dedicated patient equipment between patients
• IF USING AEROSOL‐GENERATING PROCEDURES
– (e.g. intubation, bronchoscopy, CPR, suction)
• Perform planned procedure in an adequately ventilated room
• Allow entry of essential staff only
• Clean hands
• Put on long sleeved disposable gown
• Put on particulate respirator mask (e.g. FFP2 or FFP3 –fit check to ensure a
good seal)
• Put on eye protection, and then put on gloves
8/2/2009 219
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Upon Arrival to clinical setting:
• Follow instructions as listed in side panel:
– ‘BEFORE EVERY PATIENT CONTACT’
• Direct patient with flu‐like symptoms to
designated waiting area (fever, cough, headache,
muscle pain, sore throat, runny nose, sometimes
vomiting and diarrhoea)
• Provide instruction and materials to patient on
respiratory hygiene/cough etiquette and hand ‘BEFORE EVERY PATIENT
hygiene CONTACT’
• Put surgical mask on patient if tolerable to
patient
• Ensure at least 1 metre(3.3 feet) between
patients in cohort area
8/2/2009 220
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Upon Initial Assessment:
• Record respiratory rate over one full minute and oxygen
saturation if possible
• If respiratory rate is high or oxygen saturation is below 90%,
alert senior care staff for action
• Record history, including flu‐like symptoms, date of onset,
travel, contact with people who have flu‐like symptoms,
co‐morbidities or conditions associated with high risk of
complications
• If taking Clinical Specimens:
• Use surgical mask, plastic apron/gown, gloves (and goggles
if risk of splashing or spraying) when taking respiratory
samples
• Take nose and throat viral swabs, and sputum for culture if
indicated
• Label specimen correctly and send to laboratory with
biohazard precautions
• Consider alternative or additional diagnoses
8/2/2009 221
Pandemic (H1N1) 2009
Triage Health Care Setting Guidelines
• Initial and Ongoing patient Management:
• Supportive therapy as for any influenza patient
including:
• Give oxygen to maintain oxygen saturation above 90%
or if respiratory rate is elevated (when oxygen
saturation monitor not available)
• Administer antipyretics if required. If patient <16
years, paracetamol is drug of choice
• Ensure adequate fluid intake
• Give appropriate antibiotic if evidence of secondary
bacterial infection (e.g. pneumonia)
• Consider alternative or additional diagnoses
• Decide on need for antivirals (oseltamivir or
zanamivir), considering contra‐indications and drug
interactions using current guidance
8/2/2009 222
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Before Patient Transport/Transfer:
• Put surgical mask on patient if tolerable
to patient
• Inform transferring staff of patient’s
infectious status
• Facilities should also ensure that plans
are in place to communicate
information about suspected cases that
are transferred to other departments in
the facility (e.g., radiology, laboratory)
and other facilities
8/2/2009 223
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Before Patient Entry To Designated Area:
• Post restricted entry and infection control signs
• Provide dedicated patient equipment if available
• Ensure at least 1 metre(3.3 feet) between patients in
cohort area
• Patient charts/records should not be taken into the
single room
• Patient to wear surgical mask if outside isolation room
or cohort area
• Ensure protocol for frequent linen change and surface
cleaning in place
• Patient to leave designated area only when essential
8/2/2009 224
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Visitors Entering Designated Area:
– (isolation room or a cohorted area)
– Schedule and control visits to allow for appropriate screening
for acute respiratory illness before entering the hospital
– Instruction on use of personal protective equipment and other
precautions (e.g., hand hygiene, limiting surfaces touched)
– Visitors should be instructed to limit their movement within the
facility
• Visitors should be restricted to a minimum
• Clean hands
• Put on surgical mask
• On leaving designated area, remove mask outside room
• Clean hands
8/2/2009 225
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Staff ‐Before Leaving Designated Area:
– (isolation room or a cohorted area)
• Remove gloves, clean hands, then remove goggles,
gown/apron and dispose of as health care risk waste in room.
Exit room, close door
• Remove mask and dispose of as health care risk waste
• Clean hands
• Clean and disinfect dedicated patient equipment that has
been in contact with patient
• Dispose of viral‐contaminated waste as health care risk waste
8/2/2009 226
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• Before Discharge:
• Provide instruction and materials to patient/caregiver on
respiratory hygiene/cough etiquette and hand hygiene
• Provide advice on home isolation, infection control and
avoiding social contact
• Provide information about illness, follow up
arrangements and take home medications
• Provide advice to re‐consult if deterioration in condition
8/2/2009 227
Patient Resource for GPs
Guidance For Caring For Persons At Home With
Pandemic Influenza A(H1N1) 09 Virus
Update :July, 16, 2009
http://www.hpsc.ie/hpsc/A-
8/2/2009 Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfl 228
uenza/AdviceforHealthProfessionals/GPs/File,3636,en.pdf
Influenza A (H1N1) Triage
Health Care Setting Guidelines
• After Discharge:
• Dispose of or clean and disinfect
dedicated patient equipment as per
manufacturer’s instructions
• Change and place laundry in an alginate
bag and into a colour coded bag
• Clean surfaces with detergent and
disinfect using a hypochlorite solution
1000ppm Water soluble laundry
bags for infection control
in hospital
• Dispose of viral‐contaminated waste as
health care risk waste
8/2/2009 229
Pandemic H1N1 2009
Clinical Practice Note For Critical Care
• Pandemic H1N1 2009 Clinical Practice Note
• “Managing critically ill cases”
http://www.hpa.org.uk/web/HPAwebFile/HPA
8/2/2009 web_C/1248854036293 231
Pandemic (H1N1) 2009
Diagnostics Summary
• The following investigations are recommended “pandemic
influenza expert group” in patients referred to hospital:
Test Who this applies to
Full blood count All patients
Urea and electrolytes All patients
Liver function tests All patients
C-reactive protein If influenza-related pneumonia is suspected*
Chest x-ray All patients
Pulse oximetry All patients. If <92% on air, then arterial blood gases.
ECG Patients with cardiac and respiratory complications or co-morbid illnesses.
Patients with influenza-related pneumonia should also have the following
bacteriological tests:
Blood culture (Gold standard) (preferably before antibiotic treatment is commenced)
Pneumococcal urine antigen (20 mls urine sample)
Legionella urinary antigen 20 mls urine sample)
Sputum Gram stain, culture Antimicrobial susceptibility tests on samples obtained from patients who:
i.are able to expectorate purulent samples, and
ii. ave not received prior antibiotic treatment.
Paired serological examination for influenza/other agents Acute serum should be collected and a ‘convalescent’ sample obtained
after an interval 10-14 days (both 5-10mLs clotted blood)
8/2/2009 232
Clinical Management of Adults In The
Hospital Setting
• Severity assessment when presenting to hospital
• Patients with uncomplicated influenza A(H1N1) infection
would be expected to make a full recovery and do not
require hospital care
– Voluntary isolation with antivirals at home with self surveillance
• Patients with worsening of pre-existing co-morbid medical
conditions should be managed according to best practice for
that condition with reference to published disease-specific
guidelines (High risk groups)
– Influenza-related Pneumonia assessment :
• CURB-65 score*
Bilateral pulmonary
8/2/2009 infiltrates 233
Clinical Management of an Adults In The Hospital
Setting Management of Influenza-related Pneumonia
• *Score 1 point for each feature present:
• Confusion (Mental Test Score of ≤ 8, or new disorientation in person, place or time.)
• Urea > 7mmol/L
• Respiratory rate ≥ 30/min
• Blood pressure (SBP < 90mmHg or DBP ≤ 60mmHg) Patient admitted to
ICU with severe
bilateral pneumonia
• New bilateral lung shadowing on CXR consistent with primary viral pneumonia should
be taken as a feature of severe pneumonia regardless of CURB-65 score!
• Assessment of those with Influenza-related pneumonia:
• Severity assessment: (CURB-65 score)
– *Score 1 point for each feature present
CURB-65 score* Recommended action
0 Likely suitable for home treatment
1 or 2 Consider elective hospital stay, particularly
with score 2, or hospital supervised
outpatient stay
3 or more Manage in acute hospital as severe
pneumonia
8/2/2009 234
Clinical Management of Adults In The
Hospital Setting
• High Dependency or Intensive Care Unit referral:
• Patients with primary viral pneumonia or a CURB-65
score of 4 or 5 should be considered for HDU/ICU
referral
• General indications for HDU/ICU referral include:
1. Persisting hypoxia with PaO2 <8Kpa despite maximal
oxygen administration
2. Progressive hypercapnia
3. Severe acidosis (pH<7.26)
4. Septic shock
8/2/2009 235
Paediatric Respiratory Distress
Severity Assessment
Paediatric Respiratory Distress Mild Severe
Severity Assessment
Infants
Temperature > 38.5 °C Temperature > 38.5 °C
Respiratory rate <50 breaths per min Respiratory rate >70 breaths per min
Mild recession Moderate to severe recession
Taking full feeds Nasal flaring
Infants Cyanosis
Intermittent apnoea
Grunting respiration
Not feeding
Older children
Temperature > 38.5 °C Temperature > 38.5 °C
Resp rate < 50 breaths per min Resp rate > 50 breaths per min
Mild breathlessness Severe difficulty in breathing
No vomiting Nasal flaring
Cyanosis
Grunting respiration
Signs of dehydration
8/2/2009 236
Clinical management of Children
Presenting To Hospital
• Coughs and mild fevers:
– Treat at home by parents with antipyretics and fluids
– (Note: aspirin should not be used in children < 16 years)
• High fever (> 38.5 °C /101.3°F) and cough or influenza like symptoms :
– Seek medical advice
• If there are no features which put them at high risk of complications they should be treated with
oseltamivir, and given advice on antipyretics and fluids
• Children at risk of complications, and all children aged less than 3 years should be seen by a GP
• High fever (> 38.5 °C /101.3°F) and cough or influenza like symptoms PLUS at-risk group. These
children should be seen by their GP or in an Emergency Department
• Children may be considered at increased risk of complications if they have cough and fever (or
influenza like illness) and temperature >38.0°C/101.3°F AND either chronic disease or one of
following features:
– Breathing difficulties
– Severe earache
– Vomiting > 24 hours
– Drowsiness
8/2/2009 237
Clinical management of Children
Presenting To Hospital
• Criteria for hospital referral for admission are any of the following:
1. Signs of persistent respiratory distress
– markedly raised respiratory rate
– grunting
– intercostal recession
– breathlessness with chest signs
2. Cyanosis
3. Severe dehydration
4. Altered conscious level
5. Complicated or prolonged seizure
6. Signs of septicaemia – extreme pallor, hypotension, floppy infant
7. Most children admitted to hospital are likely to need oxygen
therapy and/or intravenous support as well as antibiotics and
oseltamivir
8/2/2009 238
Clinical management of Children
Presenting To Hospital
• Indications for referral to High Dependency or Intensive Care are:
1. The child is failing to maintain a SaO2 of >92% in FiO2 of >60%
2. The child is in shock
3. There is severe respiratory distress and a raised PaCO2 ( > 6.5 Kpa)
4. There is a rising respiratory rate and pulse rate with clinical evidence
of severe respiratory distress with or without a raised PaCO2
5. There is recurrent apnoea or slow irregular breathing
6. There is evidence of encephalopathy
8/2/2009 239
Clinical Management of Children
Presenting To Hospital
• Microbiological/virological investigations in
hospital:
– WHO Phase 6, Irish Alert levels 2 and 3)
• A. Virology – all children
– Nasopharyngeal aspirate or nose and throat swabs
– If presentation is more than 7 days after onset of
illness, an ‘acute’ serum (2-5 ml clotted blood)
should be collected and a ‘convalescent’ sample (2-
5 ml clotted blood) obtained after an interval of not
less than 7 days.
• B. Bacteriology – children with influenza related
pneumonia
– Blood culture (before antibiotic treatment is
commenced)
– Sputum samples obtained from older children
– Paired serological examination for influenza/other
agents
8/2/2009 240
Pandemic (H1N1) 2009 Virus
Clinical Management : Discharge Check list
• Discharge and follow up Children can be safely discharged
– Patients should be reviewed 24 from hospital when they:
hours prior to discharge home – Are clearly improving
– Are physiologically stable
• Those with 2 or more of the – Can tolerate oral feeds
following unstable clinical factors – Have a respiratory rate < 40/min (
should be considered for <50/min in infants)
continuing care in hospital: – Have an awake oxygen saturation
of >92% in air
– Temperature > 37.8oC
– Heart rate > 100/min
– Respiratory rate > 24/min Follow up clinical review should be considered
– Systolic blood pressure <90mmHg for all patients who suffered significant
– Oxygen saturation < 92% on room complications or who had significant worsening
air of their underlying disease, either with their
– Inability to maintain oral intake general practitioner or in a hospital clinic.
– Abnormal mental status or mental
status not returned to baseline.
8/2/2009 241
Pandemic Influenza A(H1N1) 09 Virus
Clinical Management :Hospital and Community
Setting Resource
Extensive clinical Practice
Guidelines are available
at this Hyperlink
(Click during Slide show!)
• http://www.ndsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPande
micInfluenza/Guidance/PandemicI
nfluenzaPreparednessforIreland/Fil
e,3261,en.pdf
8/2/2009 242
HPSC References for
Patient Care Checklist for Hospitals as of July, 29, 2009
• 28th July 2009, Version 2.0
• 1. Respiratory Hygiene and Cough Etiquette Poster
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/InfectionControl/File,3599
,en.pdf
• 2. Guidance on hand hygiene
• http://www.ndsc.ie/hpsc/A‐Z/Gastroenteric/Handwashing
• 3. Pandemic Influenza Preparedness for Ireland: Advice of the Pandemic Influenza Expert Group, Chapter 9, Appendix 1
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/Guidance/PandemicInfluenzaPreparednessforIreland/File,3261,en.pdf
• 4. Taking specimens for influenza virus testing from patients with suspected influenza A(H1N1)
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/LaboratoryTesting/File,38
86,en.pdf
• 5. Algorithm for the management of persons with acute febrile respiratory illness who may have influenza A(H1N1)
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/HospitalClinicians/File,358
5,en.pdf
• 6. Infection Prevention and Control Guidance for the Ambulance Service for suspected or confirmed cases of Influenza A(H1N1)
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/AmbulanceStaff/File,3601
,en.pdf
• 7. Infection Prevention and Control Precautions for use when caring for patients with suspected or confirmed Influenza A(H1N1)
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/InfectionControl/File,3628
,en.pdf
• 8. Donning and Removing Personal Protective Equipment (PPE)
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/InfectionControl/File,3627
,en.pdf
• 9. Aerosol Generating Procedures
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdviceforHealthProfessionals/InfectionControl/File,3625
,en.pdf
• 10. Taking care of a sick person with Flu
• http://www.hpsc.ie/hpsc/A‐Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdvicefortheGeneralPublic/File,3660,en.pdf
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInflu
enza/AdviceforHealthProfessionals/InfectionControl/File,36
28,en.pdf
8/2/2009 244
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
• Standard Precautions require all HCWs to:
• Standard Precautions must be applied by all HCWs to the care of all
patients/clients in all healthcare settings regardless of the suspected or
confirmed presence of an infectious agent.
– Occupational health programme
– Appropriate patient placement
– Hand hygiene
– Patient movement and transfer
– Respiratory hygiene and cough etiquette
– Use of personal protective equipment (PPE)
– Decontamination of the environment
– Decontamination of reusable medical equipment
– Management of linen and laundry
– Management of needle stick injuries
– Management of waste
– Management of spillages of blood and body fluids
– Safe injection practices
– Management of sharps
8/2/2009 245
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.2 Occupational Health Programme Standard Precautions HCWs should self monitor their own health for influenza like symptoms
HCWs with symptoms should not attend work and should immediately report symptoms to their line manager
All healthcare facilities should have a surveillance programme in place to monitor staff and patients for ILI. Clusters of
outbreaks should be reported to the local Public Health Department. See
“Protocol for Surveillance of Influenza-like Illness in Healthcare Workers during Pandemic Influenza A(H1N1)v Mitigation
Phase” at www.hpsc.ie
2.3 Patient Placement Standard Precautions Home
Assess the patient with suspected or confirmed influenza A(H1N1) by phone at home if possible
GP/Primary care/Community
Droplet Precautions
Place in a single room and avoid communal areas if possible. Otherwise do not place within approximately 1 metre of
other patients
Contact Precautions
Hospital
Place patient with suspected or confirmed influenza A(H1N1) in a single room preferably with ante room and en-suite
facilities
Emergency departments without single rooms must have interim arrangements in place to prioritise transfer to an
appropriate single room
Avoid communal areas and placing patient within approximately 1 metre of other patients
Ambulance
Refer to ambulance advice document
2.4 Hand Hygiene Standard Precautions Hand hygiene using liquid soap or alcohol hand gel/rub must be performed before and after all patient
care procedures
2.5 Patient Movement and Transfer Standard Precautions External transfer
Patient should wear a surgical mask outside their room
It is the responsibility of the transferring facility to inform staff of the precautions required
Droplet Precautions
Refer to ambulance advice document
Contact Precautions Internal transfer
Minimise movement of patient from single room
Patient should wear a surgical mask outside their room
Staff should be informed of the precautions required in the receiving departments (e.g. diagnostic departments)
Avoid holding patients in communal areas (radiology etc)
HCW PPE: Wear a surgical mask and observe hand hygiene
8/2/2009 246
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.6 Respiratory Hygiene & Standard Precautions As per Standard Precautions patients presenting with signs and symptoms of undiagnosed respiratory
Cough Etiquette infections should be
Identified promptly in primary care and emergency departments
Offered masks (and other symptomatic persons e.g., persons who accompany ill patients should also
be offered masks)
Encouraged to maintain spatial separation, ideally a distance of approximately 1 meter, from others
in common waiting areas
Emergency departments and primary care facilities should:
Ensure that supplies of tissues, foot operating waste bins and hand hygiene facilities are available in
all departments including waiting areas throughout the facility
Educate patients/visitors/carers on Respiratory Etiquette and Cough Hygiene using some or all of the
following:
Patient information leaflets
Posters in all departments especially waiting areas
Droplet Precautions If influenza A(H1N1) is suspected place patient & persons who accompany ill patients in a single
room
See Appendix A for respiratory hygiene and cough etiquette poster. The poster can be downloaded
from the following website
•http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdvicefortheGeneralPublic
/RespiratoryHygiene/
8/2/2009 247
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.7 Personal Standard Precautions The following applies to all settings:
Protective Droplet Precautions GP/Primary care/Ambulance transfer/Hospital
Equipment Contact Precautions Patient should wear:
(PPE) A surgical mask when outside their single room
HCWs must wear the following for:
1. Routine care
Surgical mask, Plastic Apron/Gown, Gloves (& Goggles if
splashing/spraying risk)
2. Aerosol Generating Procedures
FFP2 or FFP3 mask (correctly fitted), Goggles, Long sleeved disposable
gown, Gloves
Refer to Aerosol Generating Procedures document and to PPE poster
Masks
Change mask if it becomes damp, wet or torn
Change and discard mask when leaving the room or patient care area
HCW’s when putting on and removing PPE must :
Put on and remove in the correct sequence (refer to PPE poster)
Remove gloves & apron/gown inside the single room
Remove mask in the ante room or immediately outside the single room
if there is no ante room. Ensure door is closed.
Decontaminate hands immediately after removing PPE
8/2/2009 248
Swine influenza A (H1N1)
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed swine influenza A (H1N1)
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.8 Environmental Decontamination Standard Precautions In addition to Standard Precautions:
Only take essential equipment and supplies into the room.
Droplet Precautions Do not stockpile as unused stock will have to be discarded on cessation of additional precautions
Patient charts/records should not be taken into the single room
Contact Precautions The frequency and intensity of cleaning may need to be increased based on the patients level of hygiene and the level of
environmental contamination
HCW’s must wear surgical mask, gloves, apron for cleaning the patients room
Thoroughly clean the environment and furniture and all patient care equipment daily with a neutral detergent and
disinfectant (hypochlorite solution 1000 ppm) paying special attention to frequently touched sites and equipment close to
the patient
On patient discharge/transfer cleaning and disinfection of the environment
Prior to initiating environmental cleaning and disinfection, all privacy, shower and window curtains must be
removed and sent for laundering
All disposable items including paper towels and toilet paper should be discarded
All sterile and non-sterile supplies in the patient room to be discarded on patient transfer/discharge
Dishes and Eating Utensils Treatment rooms (e.g., x-ray etc)
Clean and disinfect the environment and furniture after use with a neutral detergent and disinfectant
(hypochlorite solution 1000 ppm) paying special attention to frequently touched sites (door handles, bed rails
etc)
Medical equipment (refer to 2.9)
Cutlery and crockery - No additional measures are required for cutlery and crockery washed in a dishwasher or wash with
liquid detergent and water
2.9 Patient Care Equipment & Standard Precautions In addition to Standard Precautions:
Decontamination of Medical Devices Dedicate patient care medical devices (e.g., thermometers, sphygmomanometers, stethoscopes, glucometers) to single
Droplet Precautions patient use
Use disposable equipment whenever possible
Contact Precautions Manufacturer’s instructions should be followed for cleaning and disinfecting of reusable medical equipment after use
Single use items should be disposed of after use
Bedpan/Commodes
Use a working washer disinfector at 80°C for one minute
Dedicate a commode to single patient use if no en suite available
Decontaminate commode surface after each patient use with a hypochlorite solution 1000 ppm
8/2/2009 249
Swine influenza A (H1N1)
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed swine influenza A (H1N1)
Key Components STANDARD Key Elements of Clinical Practices and Measures
PRECAUTIONS
2.10 Linen/Laundry Standard Precautions No additional precautions necessary
As per Standard Precautions all contaminated laundry should be carefully placed in an alginate stitched or water
soluble bag and then placed into a laundry bag clearly identified with labels, colour-coding or other methods prior to
transport to an approved laundry capable of dealing with contaminated linen
2.11 Management of needle stick injuries (NSI) and Standard Precautions No additional precautions necessary
blood and body fluid exposure
2.12 Management Standard Precautions No additional precautions necessary for Non Healthcare Risk and Healthcare Risk Waste
of Waste Dispose of all PPE as Healthcare Risk Waste (e.g. used masks)
2.13 Management spillages of blood and body fluids Standard Precautions No additional precautions necessary
2.14 Safe Injection Practices Standard Precautions No additional precautions necessary
2.15 Management of sharps Standard Precautions No additional precautions necessary
8/2/2009 250
Point of Care Risk Assessment Tool
for Pandemic (H1N1) 2009 Flu Virus
(Risk Assessment Matrix)
“One goal of this guidance is, using a risk assessment
approach, to support use of personal protective
equipment most appropriate to the risk associated
with the care to be provided, thereby protecting
limited resources for those situations where
protection is most needed.”
Point of Care Risk Assessment Tool for
Pandemic (H1N1) 2009 Flu Virus
• According to PHAC:
• “Source control, achieved through administrative and
engineering measures, is the most effective way to
prevent the transmission of infectious agents, including
H1N1 2009, in all health care settings”
• This Interim Guidance is designed to help slow (mitigate)
the transmission of this virus
• The following guidance should be read in conjunction
with relevant HPSC guidance documents.
• Should be developed into Pandemic Influenza A(H1N1)
Care Bundle!
• “Have you Thinking Now!”
Point of Care Risk Assessment Tool for
Pandemic (H1N1) 2009 Flu Virus
• Point of Care Risk Assessment (PCRA) is an activity performed by the HCW before
every patient interaction, to:
• Rational:
• Evaluate the likelihood of exposure to H1N1 2009
– From a specific interaction (e.g., performing/ assisting with aerosol-generating medical
procedures, other clinical procedures/ interaction, non-clinical interaction (i.e., admitting,
teaching patient/ family), transporting patients, direct face-to-face interaction with patients,
etc.),
– With a specific patient (e.g., infants/ young children, patients not capable of self care/ hand
hygiene, have poor-compliance with respiratory hygiene, copious respiratory secretions,
frequent cough/ sneeze, early stage of influenza illness, etc.),
– In a specific environment (e.g., single rooms, shared rooms/ washrooms, hallway, influenza
assessment areas, emergency departments, public areas, therapeutic departments, diagnostic
imaging departments, housekeeping, etc.),
– Under available conditions (e.g., air exchanges in a large waiting area or in an airborne
infection isolation room, patient waiting areas);
• And
• Choose the appropriate actions/ PPE needed to minimize the risk of patient,
HCW/ other staff, visitor, contractor, etc. exposure to H1N1 2009 /suspect ILI case
Point of Care Risk Assessment Tools
• The PCRA tool consists of tables
1 to 4.
• Step 1: In Table 1, choose one of the physical setting and level of patient
interaction options (in the highlighted column) using the description and
example columns in the table.
• Step 2: In Table 2, choose one of the patient clinical status and source
control capability options (in the highlighted column) using the description
and patient presentation column in the table.
• Step 3: Using the matrix on Table 3, match the physical setting and level
of patient interaction option from Table 1 (Step 1) with the patient clinical
status and source control capability option identified from Table 2 (Step 2),
to determine the appropriate level of precautions.
• Step 4: From Table 4, determine what specific measures and personal
protective equipment are indicated for the level of precautions identified
in Table 3 (Step 3).
Table 1: Identification of the Physical Setting
and Level of Patient Interaction
Physical Setting and Level of Patient Description Example
Interaction
No Patient Interaction, Area with no patient access (restricted areas) Non-clinical setting (medical record
Non-Clinical department, administrative office, central
pharmacy, information technology office,
central storage area, mail room, central
maintenance areas, business office, etc.).
No Direct Patient Interaction and No Indirect No face-to-face interaction and no indirect Hallways, cafeteria, public areas, clinical
Contact contact with patients. areas with no patient access (charting room,
office, storage room, staff lounge,
medication room, etc.), totally enclosed
reception/triage areas with physical barrier
between HCW and patient.
Indirect Contact No direct patient interactions; Indirect Discharge patient room cleaning, equipment
contact only with patient environment or cleaning.
contaminated inanimate objects
Direct Patient Interaction Direct, face-to-face interaction with patient Providing patient care, home care visit,
(within 2m of the patient) assisting with Activity of Daily Living (ADL),
diagnostic imaging, phlebotomy services,
physiotherapy, occupational therapy,
recreational therapy, intra-hospital
transport/portering, non-enclosed
triage/registration area, cleaning patient
bedspace while occupied, routine
ambulance or inter-facility transport
Direct Patient Interaction with Potential for Performing and/or assisting with Aerosol Open endotracheal suctioning,
Aerosol Generation Generating Medical Procedures (AGMP) bronchoscopy, endotracheal intubation,
tracheostomy procedures, nebulized
therapy, cardiopulmonary resuscitation
Table 2: Identification of the Patient Clinical
Status and Source Control Capability
Patient Clinical Status and Source Description Patient Presentation
Control Capability
Recovered from Influenza Patient recovered from influenza Influenza-infected patient,
beyond the known period of
communicability
Influenza and Compliant or Weak 1) Patient with symptoms Cough of any intensity and
Cough and Not Compliant compatible with influenza Adherence with respiratory
with cough hygiene Adherence to hand
hygiene
2) Patient with symptoms Weak or no cough and Not
compatible with influenza adherent with respiratory
with weak or no cough hygiene Not adherent to hand
hygiene
Influenza and Forceful Cough and Patient with symptoms Forceful cough and Not adherent
Not Compliant compatible with influenza with respiratory hygiene Not
adherent to hand hygiene
Influenza and AGMP Patient with symptoms And an Aerosol Generation
compatible with influenza Medical Procedure (AGMP) is
being performed
Note: If more than one risk level identified (e.g., multiple concurrent patient
interactions), select the higher risk level.
Table 3: Level of Precautions Matrix
Patient Clinical No Patient No Direct or Indirect Contact Direct Patient Direct Patient
Status and Source Interaction Indirect Patient Interaction Interaction with
Control Capability Non Clinical Interaction AGMP
Recovered from I I II II II
Influenza
Influenza and I I II III IV
Compliant or Weak
Cough and Not
Compliant
Influenza and I I II III IV
Forceful Cough and
Not Compliant
Influenza and I I III IV IV
AGMP
Note: It is anticipated that the majority of patients with H1N1 2009 will be cared for
using level II and III and a minority would be cared for using level IV precautions.
Table 4: Personal Protective Equipment Suggested for the Level
of Precautions for Human Cases of H1N1 2009
Hand hygiene Respiratory FFP2/3 Surgical Mask Eye Gown Gloves
hygiene Respirator Protection
Mask
Level I Yes Yes No Patient No Patient No Patient No Patient No Patient
Contact – Contact – Contact – Contact – Contact –
Not Required Not Required Not Required Not Required Not Required
Level II Yes Yes No, Except as As Per As Per As Per As Per
per Routine Routine Routine Routine
Additional Practices Practices Practices Practices
Precautions
Level III Yes Yes No, Except as Yes Yes As Per As Per
per Routine Routine
Additional Practices Practices
Precautions
Level IV Yes Yes Yes No Yes As Per As Per
Routine Routine
Practices Practices
Note: Additional Precautions recommend an FFP-2-3 respirator mask for known or
suspected active tuberculosis, measles, shigellosis or where droplet or airborne
precaution are necessary according to hospital infection control policies
Guidance on Laboratory procedures when
pandemic influenza is present outside Ireland
(Irish Alert Level 2)
• Containment stage: Samples should be collected for influenza
investigation (including viral culture when advised by GP )
from all patients who:
8/2/2009 260
Specimens for Influenza
Virus Testing for Treatment Phase
• New testing Policy As of July ,29, 2009
• “The current swabbing policy is amended so that
testing is only necessary in the following
circumstances:
• Cases hospitalised for influenza
• Cases identified via the GP sentinel surveillance
scheme
• Other situations, following discussion with local
public health – for example:
– Cases of influenza like illness (ILI) in an institution
– Unusual clusters of serious illness
– Influenza like illness (ILI) or unexplained illness occurring
in a hospitalised patient
– Development of influenza like illness (ILI) in a person on
chemoprophylaxis” http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfl
uenza/SwineInfluenza/AdviceforHealthPr
ofessionals/GPs/File,3869,en.pdf
8/2/2009 261
Taking Specimens for Influenza Virus Testing From
Patients with Suspected
Pandemic Influenza A(H1N1) 09 Virus
• Health Protection Surveillance
Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
• See Website for download for
clinicians or hyperlink during
slideshow
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPand
emicInfluenza/SwineInfluenza/Ad
viceforHealthProfessionals/Hospit
alClinicians/File,3604,en.pdf
8/2/2009 262
Pandemic Influenza A(H1N1) 09 Virus
Irelands Laboratories Overview
• Approximately 34 (BL3) laboratories
distributed among the universities an
biotechnology companies in Ireland
• These predominantly handle up to Category 3
pathogens or conduct genetic manipulations
under regulation of the Environmental
Protection Agency
• High containment Class 3 (+) laboratory has
been commissioned at the University College
Dublin National Virus Reference Laboratory
(UCD NVRL)
• Environmental and clinical specimens are
investigated in a Class 3 containment
laboratory at Cherry Orchard Hospital, Dublin
• Novel Influenza A H1N1 in BSL-3 practices
(enhanced BSL-2 conditions)
8/2/2009 263
Pandemic Influenza A(H1N1) 09 Virus
National Virus Reference Laboratory
• Postal address:
Medical Microbiology,
CRID Building,
University College Dublin,
Belfield,
Dublin 4,
Ireland.
Telephone Number: +353-1-716 1325/1236
Fax Number: +353-1-716 1239
Email: margaret.brindley@ucd.ie
8/2/2009 264
Pandemic Influenza A(H1N1) 09 Virus
Specimen Collection
• Clinicians should obtain a respiratory
swab for swine influenza testing and
place it in a refrigerator (not a freezer).
– A diagnosis of confirmed swine flu
requires laboratory testing of a
respiratory sample (a simple nose and
throat swab)
– Collected during the first five days
• Once collected, the clinician should
contact their state or local health
department to facilitate transport and
timely diagnosis at a public health
laboratory
• Laboratories should send all
unsubtypable influenza A specimens as
soon as possible to NRVL
• Spill containment measures should be in
place!
8/2/2009 265
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Viral isolation on clinical specimens from patients who are
suspected cases of swine influenza A (H1N1) virus infection
should be performed in a BSL2 laboratory with BSL3
practices (enhanced BSL2 conditions)
• Additional precautions include: Recommended Personal
Protective Equipment (based on site specific risk
assessment )
– Respiratory protection – fit-tested FFP 2-3 respirator or higher
level of protection
– Shoe covers
– Closed-front gown
– Double gloves
– Eye protection (goggles or face shields)
8/2/2009 266
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Routine laboratory procedures, including
diagnostic work and PCR analysis:
• Biosafety Level 2 (BSL2), as detailed in the
WHO Laboratory biosafety manual, 3rd
edition.
• Examples of routine laboratory
procedures that require BSL2 include:
• Diagnostic testing of serum, blood
(including haematology and clinical
chemistry), respiratory tract specimens, or
other specimens
• Manipulations involving neutralized or
inactivated (lysed, fixed, or otherwise
treated) virus particles and/or incomplete,
non-infectious portions of the viral
genome
• Routine examination of mycotic and
8/2/2009 267
bacterial cultures
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Viral isolation on clinical
specimens from patients who are
suspected or confirmed cases of
Pandemic Influenza A(H1N1) 09
Virus infection should only be
performed in laboratories capable
of meeting the following
additional essential (minimal) Bio containment :BL3(+) Two
microbiological safety cabinets
containment requirements: (msc ) class I and class I/ III) at
• Practices recommended for NVRL
containment laboratories —
Biosafety Level 3 in the WHO
Laboratory biosafety manual, 3rd
edition
8/2/2009 268
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• A controlled ventilation system maintains
directional airflow into the laboratory room
• Exhaust air from the laboratory room is not
recirculated to other areas within the building
– Air should be HEPA filtered, if reconditioned NRVL BL3(+) Has
and recirculated within the laboratory. two microbiological
– When exhaust air from the laboratory is safety cabinets (class
discharged to the outdoors, it must be I and class I/ III)
dispersed away from occupied buildings and air
intakes.
– This air may be discharged through HEPA filters
• All manipulations of infectious or potentially
infectious materials must be performed in
appropriately maintained and validated BSCs.
(Ireland: NRVL Uses msc class I and class I/ III)
• Access to the laboratory is restricted when
work is in progress
8/2/2009 269
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Viral isolation on clinical specimens :
• Biosafety Level Three plus (BL3+) containment
laboratory
• PPE
• Laboratory workers should wear protective
equipment, including:
– Disposable gloves
NRVL Layout of Bio
– Solid front or wrap-around gowns Containment :BL3(+)
– Scrub suits
– Coveralls with sleeves that fully cover the
forearms
– Head coverings
– Shoe covers or dedicated shoes
– Eye protection (goggles or face shield)
– Respiratory protection (fit-tested particulate
respirator, e.g. EU FFP2, US NIOSH-certified N95
or equivalent, or higher protection), because of
the risk of aerosol or droplet exposure
8/2/2009 270
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions Summary
• Clinical laboratory testing • Viral isolation
(laboratory diagnostic work)
• Diagnostic laboratory work on • Growth of the virus in cell culture
clinical samples from patients or embryonated eggs should be
who are suspected cases of novel performed in a BSL-2 laboratory
influenza A H1N1 virus infection with BSL-3 practices.
should be conducted in a • All viral manipulations should be
biosafety level 2 (BSL-2) done inside a microbiological
laboratory. safety cabinets (msc ) class I and
• All sample manipulations with class I/ III) that is certified
the potential for creating an annually.
aerosol should be done inside a
microbiological safety cabinets
(MSC) that is certified annually.
Bio containment :BL3(+) Two microbiological
safety cabinets (msc ) class I and class I/ III) at
NVRL
8/2/2009 271
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Animal work
• The following activities require animal facility —
Biosafety Level 3 facilities and work practices, as
detailed in the WHO Laboratory biosafety
manual, 3rd edition.
– Inoculation of animals for potential recovery of the
agent from influenza A (H1N1) specimens
– Any protocol involving animal inoculation for
confirmation and/or characterization of putative
influenza A (H1N1) agents
– Bio containment :BL3(+) At NRVL/Cherry Orchard
8/2/2009 272
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Waste
• All waste disposal procedures should be followed as outlined in
your facility standard laboratory operating procedures
• Appropriate disinfectants
• 70% Ethanol
• 5% Lysol
• 10% Bleach
• Influenza viruses can survive on environmental surfaces and can
infect a person for up to 2 to 8 hours after being deposited on an
environmental surface
• Commonly used surfaces such as door handles, handrails, table
surfaces etc. should be cleaned first and then disinfected with a
chlorine releasing disinfectant (1000 ppm) twice daily
Detailed information on
• Disinfectants with proven activity against enveloped viruses disinfectants and their
recommended use can be
include chlorine, alcohol, peroxygen, quaternary ammonium found in Laboratory
biosafety manual, 3rd
compounds and phenolic compounds and should be adequate if ed., Geneva, World
Health Organization,
2004
used according to manufacturer’s recommendations
8/2/2009 273
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Precautions
• Personnel should self monitor for fever and
any symptoms Never
place
knee on
• Accidental exposure: floor
– Antiviral chemoprophylaxis with zanamivir or
oseltamivir for 7 days( See PEP slide)
Centre for Disease
Control and
Prevention, shows
a negative-stained
image of the
swine flu virus.
8/2/2009 274
NRVL Testing for
Pandemic Influenza A(H1N1) 09 Virus
• Preferred Respiratory Specimens
• Swabs
– Nasopharyngeal Aspirates
• Storing Clinical Specimens
• Shipping Clinical Specimens
• Recommended Tests HSE :Taking
• Other Influenza Tests specimens for
influenza virus testing
– Rapid Influenza Antigen Test from patients with
– Immunofluorescence (DFA or IFA) suspected Pandemic
Influenza A(H1N1) 09
– Viral Culture Virus
8/2/2009 275
NRVL Testing for
Pandemic Influenza A(H1N1) 09 Virus
• Taking specimens for influenza virus
testing from patients with suspected
influenza A (H1N1):
• As with all respiratory viruses, diagnosis
of influenza virus depends on the
collection of high-quality specimens,
their rapid transport to the virology
laboratory and appropriate storage
before laboratory testing
• Virus is best detected in specimens
containing infected cells and secretions
• Specimens should ideally be taken
preferably during the first 5 days after
onset of clinical symptoms
8/2/2009 276
NRVL Testing for
Pandemic Influenza A(H1N1) 09 Virus
• Before taking specimens:
• Before a specimen is taken, it should
first be discussed with the Director or
Public Health as outlined in the
national algorithm for the
management of persons with possible
influenza A (H1N1)
• Infection prevention and control
precautions
• While not strictly an aerosol
generating procedure it is
recommended that the same
National Algorithm
precautions are followed when taking
Update June, 26, 2009
nasal and throat viral swabs to out
rule influenza A (H1N1)
8/2/2009 277
NRVL Testing for Pandemic Influenza
A(H1N1) 09 Virus
• Infection prevention and control precautions:
• While not strictly an aerosol generating procedure it is recommended that
the following PPE is used when taking nasal and throat viral swabs to out
rule influenza A (H1N1)
• The following personal protective equipment (PPE) should be taken:
– Hand hygiene
– Standard Precautions
– Surgical
– Eye protection (i.e. goggles)
– Plastic apron (single use only)
– Gloves (some of these procedures require sterile gloves)
– Hand hygiene post procedure
• Refer to donning and removal of PPE document
8/2/2009 278
Aerosol Generating Procedures (AGP)
According to WHO And HPSC
• Aerosol generating procedures: • Nebulisation
• Intubation and related • Non-invasive positive
procedures, e.g. manual pressure ventilation(NIV)
ventilation • Bi-level positive airway
• Respiratory and airway suctioning pressure (BiPAP) ,CPAP,
(including tracheostomy care) • High frequency oscillating
• Nasopharyngeal aspiration ventilation
• Cardiopulmonary resuscitation
• Bronchoscopy
• Nasopharyngeal aspirate
• Transtracheal aspirate
• Bronchoalveolar lavage
• Biopsy of lung or tracheal tissues
• Autopsy procedures
– i.e.. (Oscillating saws)
8/2/2009 279
Influenza A(H1N1)
Infection Prevention and Control Precautions
Personal Protective Equipment (PPE) Summary
• Nasal and throat viral swabs: • Nasopharyngeal aspirate,
transtracheal aspirate,
• The following precautions should be bronchoalveolar lavage and biopsy
taken: of lung or tracheal tissues at post-
mortem, nebulizers ,
• Hand hygiene BIPAP/CPAP/NIV are all considered
• Surgical mask aerosol generating procedures:
• Goggles (if risk of splashing or
spraying) • The following precautions should be
• Plastic apron taken:
• Gloves • Hand hygiene
• Hand hygiene post procedure • FFP2 or FFP3 respiratory mask
• Goggles
• Long sleeved disposable gown
• Gloves (some of these procedures
require sterile gloves)
• Hand hygiene post procedure
Update June 9 2009
8/2/2009 280
NRVL Testing for Pandemic Influenza
A(H1N1) 09 Virus
• Respiratory specimens to take:
• A. Upper respiratory tract
– Nasopharyngeal (NP) and oropharyngeal (OP) swab
– Nasopharyngeal aspirate
– Sputum (if ordered)
• B. Lower respiratory tract
– Where clinically indicated, invasive procedures can be performed for
the diagnosis of viral lower respiratory tract infections:
– Transtracheal aspirate (TA)
– Bronchoalveolar lavage (BAL)
– Post-mortem lung or tracheal tissue
8/2/2009 281
NRVL Testing for Pandemic Influenza
A(H1N1) 09 Virus
• Swabs to use:
– Specific viral swab (contains viral transport medium in the
container of the swab)
– Regular swab – after taking the specimen the swab should be
broken off into a bottle containing virus transport medium
– Nasopharyngeal secretions should be aspirated into a sterile
plastic mucous extractor. Transport the mucous extractor with
the secretions
– A transtracheal aspirate/ bronchoalveolar lavage should be
transported in a sterile container
8/2/2009 282
Influenza A (H1N1)
Nasopharyngeal Swabs
• According to PHAC And CDC : Nasopharyngeal Swabs
• Ideally, swab specimens should be collected using (COPAN flocked swab)
swabs with a synthetic tip (eg, polyester or Dacron)
and a plastic shaft
• Optimal specimens continue to be Nasopharyngeal
Swabs (COPAN flocked swab) but Starplex non-
flocked swabs are also acceptable for
nasopharyngeal and nasal samples
• Do not use wired shaft pertussis swab as it
interferes with the test and give a false negative
result
• Swabs with cotton tips and wooden shafts are not
recommended
• Specimens collected with swabs made of calcium
alginate are not acceptable
• The swab specimen collection vials should contain
3 mL of VTM (eg, containing protein stabilizer,
antibiotics to discourage bacterial and fungal
growth, and buffer solution), such as M4RT or the
BD Universal Viral Transport System
8/2/2009 283
Pandemic Influenza A(H1N1) 09 Virus
Flocked Swabs and Copan-Manufactured VTM
for Pandemic Influenza A(H1N1) 09 Virus
• CDC Recommends Flocked Swabs and
Copan-Manufactured VTM for H1N1
Pandemic Influenza
A(H1N1) 09 Virus :
Optimal specimens
continue to be
Nasopharyngeal Swabs
(COPAN flocked swab)
8/2/2009 284
Pandemic Influenza A(H1N1) 09 Virus
Nasopharyngeal Flocked Swabs Procedure
• “Specimens for the
laboratory
diagnosis of Novel
A (H1N1)Influenza
should be collected
in the following
order of priority:
1. Nasopharyngeal
aspirates
2. Acute serum
3. Convalescent
serum
8/2/2009 285
Pandemic Influenza A(H1N1) 09 Virus
Nasopharyngeal (NP) , Oropharyngeal (OP) Swab
• Nasopharyngeal (NP) and oropharyngeal (OP) swab collection:
• Collect specimen with a sterile Dacron/nylon swab with a non-wooden shaft
(do NOT use calcium alginate swabs or swabs with wooden sticks)
• For NP swab, insert swab into each nostril parallel to the palate and leave in
place for a few seconds to absorb secretions. Swab both nostrils
• For OP swab, swab the posterior pharynx and tonsillar areas, avoiding the
tongue
• Place swab immediately into sterile vials containing 2 ml of viral transport
media
• Label each specimen container with patient’s FIRST AND LAST NAME, date of
birth, medical record number, date of collection, specimen type
• Place specimen vial onto ice or in refrigerator prior to and during transport at
4°C (but not frozen)
• Should not be kept un-refrigerated for more than 12 hours
8/2/2009 286
Pandemic Influenza A(H1N1) 09 Virus
Nasopharyngeal Aspirates Overview
• Ideally, swab specimens should be collected using swabs with a synthetic tip
(eg, polyester or Dacron) and an aluminium or plastic shaft
• Swabs with cotton tips and wooden shafts are not recommended
• Specimens collected with swabs made of calcium alginate are not acceptable
• The swab specimen collection vials should contain 3 ml of VTM (eg, containing
protein stabilizer, antibiotics to discourage bacterial and fungal growth, and
buffer solution), such as M4RT or the BD Universal Viral Transport System
8/2/2009 287
Pandemic Influenza A(H1N1) 09 Virus
Nasopharyngeal Aspirates Procedure
• Hierarchy “Specimens
for the laboratory
diagnosis of Novel A
(H1N1)Influenza
should be collected in
the following order of
priority:
1. Nasopharyngeal
aspirates
2. Acute serum
3. Convalescent
serum
8/2/2009 288
Pandemic Influenza A(H1N1) 09 Virus
Nasopharyngeal Aspirates Collection
• Nasopharyngeal wash/aspirates collecion:
• Have the patient sit with head tilted slightly backward
• Instill 1ml-1.5ml of nonbacteriostatic saline (pH 7.0) into
one nostril
• Insert the tubing into the nostril parallel to the palate
• Aspirate nasopharyngeal secretions. Repeat this procedure
for the other nostril
• Rinse the catheter into viral transport medium (syringe or
bulb) or aspirate viral transport media through catheter into
collection trap
• Label specimen container with patient’s FIRST AND LAST
NAME, date of birth, medical record number, date of
collection, specimen type
• Place specimen vial onto ice or in refrigerator prior to and
during transport
• Do not freeze
8/2/2009 289
Pandemic Influenza A(H1N1) 09 Virus
Bronchoalveolar Lavage (BAL) Collection
• Bronchoalveolar lavage or tracheal
aspirate:
• During bronchoalveolar lavage or tracheal aspirate,
use a double-tube system to maximize shielding
from oropharyngeal secretions
• Centrifuge half of the specimen, and fix the cell
pellet in formalin
• Place the remaining unspun fluid in sterile vials with
external caps and internal O-ring seals
• If there is no internal O-ring seal, then seal tightly
with the available cap and secure with Parafilm®
• HPSC ; broncheoalveolar lavage should be
transported in a sterile container
8/2/2009 290
Pandemic Influenza A(H1N1) 09 Virus
Sputum Collection
• Sputum collection:
• Educate the patient about the difference
between sputum and oral secretions
• Have the patient rinse the mouth with water and
then expectorate deep cough sputum directly
into a sterile screw-cap sputum collection cup or
sterile dry container
• Label specimen container with patient’s FIRST
AND LAST NAME, date of birth, medical record
number, date of collection, specimen type
• Place specimen vial onto ice or in refrigerator
prior to and during transport
• Do not freeze
8/2/2009 291
Pandemic Influenza A(H1N1) 09 Virus
Stool Collection
• In the USA, gastrointestinal symptoms (nausea,
vomiting and/or diarrhoea) have occurred in up to 38%
of outpatients with confirmed influenza A(H1N1)
• Diarrhoea has been uncommon in hospitalised cases
• SOP (Standard operating procedure) on collection
• Full PPE (in case of splashes)
• Place in Biological Bag
• Do not freeze!
• For all specimens Contact DPH/MOH/NVRL for shipping
instructions accordance to national and international
standards
8/2/2009 292
Pandemic Influenza A(H1N1) 09 Virus
Serology Suites
• Acute Serum Suites • Convalescent Serum Suites
• Immediate • 14 days after
• Specimens: • Specimens:
– Blood in clotted tube (red top) – Blood in clotted tube (red top)
– Blood in EDTA (purple top) – Blood in EDTA (purple top)
• {Full blood count) – {Full blood count)
• Additional routine blood work
according to physicians orders or
follow pre ordered Influenza-like
illness ,Influenza A(H1H1) suites
as institutional protocols
8/2/2009 293
Pandemic Influenza A(H1N1) 09 Virus Serology
Acute and Convalescent Serum Samples
• Acute and Convalescent serum samples:
• Collect 5-10 ml whole blood in a serum separator or
red top tube Allow the blood to clot, centrifuge briefly,
and collect all resulting sera in vial with external caps
and internal O-ring seals
• Refrigerate at 4°C
• The minimum amount of serum needed for testing is
200 ml, which can easily be obtained from 5 ml of
whole blood
• A minimum of 1 cc of whole blood is needed for
testing of paediatric patients
• If possible, collect 1 cc in an EDTA tube and in a
clotting tube
• If only 1 cc can be obtained, use a clotting tube
• Label specimen container with patient’s FIRST AND
LAST NAME, date of birth, medical record number,
date of collection, specimen type
8/2/2009 294
Pandemic Influenza A(H1N1) 09 Virus
and Blood Safety
• 2009 H1N1 Influenza Virus and Blood Safety:
•
Bld cultures Aerobic
No case of transfusion transmitted seasonal influenza has ever then anaerobic
been reported in the United States or elsewhere, and, to date,
no cases of transfusion transmitted H1N1 flu have been
reported!
• Safety of Plasma Derivatives
• The newly emerging 2009 H1N1 Influenza Virus is a large lipid-
enveloped virus. Validation studies performed by the product
manufacturers have shown that viruses with similar
characteristics to this agent are effectively inactivated and/or
removed by the manufacturing processes in place for these
products
• Individuals who are not in good health are not suitable to donate
blood and blood establishments must defer these potential
donors therefore….
• Blood donor screening procedures currently in place at blood
establishments should identify persons with symptoms of H1N1
flu infection
8/2/2009 295
Pandemic Influenza A(H1N1) 09 Virus
and Blood Safety
• Irish Blood Transfusion Service advisory
• Swine Flu Important Information
• “We are asking all donors who have returned from Mexico
or the United States of America in the last 14 days NOT to
attend any blood donor clinic at this time. This situation is
under review on a daily basis and further updates will be
available here. Please note that this precaution is in the
interest of donor and recipient safety. Your patience and
cooperation is greatly appreciated”
8/2/2009 296
Pandemic Influenza A(H1N1) 09 Virus
Diagnostics - Chest X-ray
• Approximately 2-5% of confirmed
cases in the US and Canada as well
as 6% in Mexico have been
hospitalised
• In Mexico
– One-third of those hospitalised
required mechanical ventilation
• Of those hospitalised in California
– 15 of 25 (60%) tested had
radiographic changes suggestive of
pneumonia including ten with
multilobar infiltrates
– Four (13%) required mechanical
ventilation
8/2/2009 297
Pandemic Influenza A(H1N1) 09 Virus
Diagnostics Summary
• The following investigations are recommended in patients
referred to hospital:
Test Who this applies to
Full blood count All patients
Urea and electrolytes All patients
Liver function tests All patients
C-reactive protein If influenza-related pneumonia is suspected*
Chest x-ray All patients
Pulse oximetry All patients. If <92% on air, then arterial blood gases.
ECG Patients with cardiac and respiratory complications or co-morbid illnesses.
Patients with influenza-related pneumonia should also have the following
bacteriological tests:
Blood culture (preferably before antibiotic treatment is commenced)
Pneumococcal urine antigen (20 mls urine sample)
Legionella urinary antigen 20 mls urine sample)
Sputum Gram stain, culture Antimicrobial susceptibility tests on samples obtained from patients who:
i.are able to expectorate purulent samples, and
ii. ave not received prior antibiotic treatment.
Paired serological examination for influenza/other agents Acute serum should be collected and a ‘convalescent’ sample obtained
after an interval not less than 7days (both 5-10mLs clotted blood)
8/2/2009 298
“Pandemic (H1N1) 2009”
Virus Real-time RT-PCR Detection Panel (Swine Flu Test Kit)
• Countries with the PCR Capacity in Place to
Diagnose Pandemic Influenza A(H1N1) 09
virus Infection in Humans Doc Available at
WHO
• 23 EU and EFTA countries are currently able to
perform PCR to diagnose Pandemic Influenza
A(H1N1) 09 virus infection in humans
8/2/2009 299
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Tests Molecular Diagnostics:
• Molecular diagnostics:
• S-OIV assay
The swine-origin influenza virus (S-OIV) assay (National Virus Reference Laboratory, NVRL, Dublin) is a real-time
one-step RT-PCR assay containing primers and a dual-labelled hydrolysis probe targeting the M gene of influenza
A viruses other than seasonal A(H1N1) and A(H3N2) viruses
• HPA (H1)v assay
The influenza A(H1)v specific assay of the Health Protection Agency (HPA) contains primers and a dual-labelled
TaqMan MGB probe (Applied Biosystems) targeting conserved sequences in the HA gene of A(H1N1)v viruses, and
the positive control swine A(H1N1) virus A/Aragon/3218/2009, in a 1-step TaqMan PCR assay [3]. The advantage
of using a genetically distinct positive control virus (A/Aragon/3218/2008) is that false positives can be
differentiated by sequence from true positives
• CDC (H1)v assay
The Centers for Disease Control and Prevention (CDC) real-time RT-PCR kit designed for the detection and
characterisation of influenza A(H1N1)v viruses contains a panel of oligonucleotide primers and dual-labelled
hydrolysis probes [4]. The CDC (H1)v primer and probe set evaluated in this study has been designed to specifically
detect A(H1)v influenza in a one-step RT-PCR assay.
• HPA (N1)v assay
The influenza A(N1)v real-time assay (HPA) is a two-step TaqMan PCR assay incorporating oligonucleotide primers
and a dual-labelled MGB TaqMan probe for the detection of the NA gene of influenza A(H1N1)v viruses and the
positive control virus A/Aragon/3218/2008 [5]. The assay has been designed to be performed in conjunction with
the influenza A(H1)v specific assay, to provide confirmation of diagnosis of influenza A(H1N1)v virus infection
8/2/2009 300
Swine Influenza Virus Real-time RT-PCR
Detection Panel (Swine Flu Test Kit)
• Instructions how to obtain CDC real time RT-PCR Kits
for detection of Influenza A( H1 N1)
• Thr rRT-PCR kits includes the following primers
/probes:
– Universal Influenza A(Infa)
– Swine Influenza A(swIfa)
– SwineH1 (swH1)
– RNaseP (Control)( RP)
• The rRT-PCR kits can also include detailed procedures CDC-developed PCR
as well as positive control materials diagnostic test to detect
novel H1N1 virus
• Send the following e-mail to flouder@cdc.gov
• I would like to request a rRT-PCR primers/probe kit for
Swine A/H1 Flu
• Contact name:
• Institution Name:
• Contact phone #:
•
8/2/2009 Institution Shipping Address(No PO Box): 301
• Preferred Shipping carrier:
Pandemic Influenza A(H1N1) 09 Virus
Virus Real-time RT-PCR Detection Panel
• INTENDED USE:
The Influenza A(H1N1)
Virus Real-time RT-PCR Detection Panel is intended for use in real-
time RTPCR assays on an ABI 7500 Fast Dx Real-Time PCR
instrument in conjunction with clinical and epidemiological
information
• Test from nasopharyngeal or nasal swab
BinaxNOW® Real-time PCR Biosystems 7500
Influenza A & B detection of Mexican Real-Time PCR
Test Swine Flu Kit
A C
B
8/2/2009 302
Pandemic Influenza A(H1N1) 09 Virus
Laboratory Tests
• Real-time RT-PCR for influenza A, B, H1, H3
– swine-origin influenza A (H1N1) virus will test positive for influenza A and
negative for H1 and H3 by real-time RT-PCR
• Rapid influenza antigen test
• Immunofluorescence (DFA or IFA):
• Viral culture:
• Please Read below in narration!
• Emergency Use Authorization of Swine Flu Test Kit : NML Winnipeg
• Centers for Disease Control and Prevention (CDC) has developed the Swine
Influenza Virus Real-time RT-PCR Detection Panel (Swine Flu Test Kit) for
the presumptive presence of swine influenza A (H1N1) virus from the
nasal or nasopharyngeal swab.
• Swine Influenza Test Kit will be made available on the CDC Swine Flu
website.
8/2/2009 303
Pandemic Influenza A(H1N1) 09 Virus
Recommended Tests
• Real-time RT-PCR for influenza A, B, H1, H3
at a state health department laboratory is
recommended
• Currently, Pandemic Influenza A(H1N1) 09
Virus will test positive for influenza A and
negative for H1 and H3 by real-time RT-PCR
• If reactivity of real-time RT-PCR for
influenza A is strong (eg, Ct <30), it is more
suggestive of a novel influenza A virus
• Confirmation of Novel Influenza is
performed at the NRVL currently, but may
be available in public health laboratories
8/2/2009 304
CDC Rt-PCR Testing Algorithm and Results Interpretation
The overall approach to influenza virus detection by RT-PCR should be
considered in the context of the national situation, e.g., how many
swl = swine like
specimens can be handled (throughput), what gene sequence to target for
RT-PCR, and whether to use concurrent or sequential testing for RT-PCR of
PCR Assays AIV = Avian Influenza virus
M, NP and HA genes. PCR = Polymerase chain reaction
Influenza A-swl subtype specific
Influenza type A (universal)
PCR (H1 gene)
Matrix gene PCR
(other genes targets are optional)
Test for Seasonal influenza
H1-and N3 using specific Confirmed Positive
Positive Positive
PCR H1N1 swl
And tested negative
Positive Negative for seasonal
influenza H1 or H3
specific PCR
Check for lab Negative Positive
confirmation by Influenza A Negative
retesting from original Other than H1N1 swl
sample Negative for influenza
A viruses (check for
Positive Check for lab other pathogens
confirmation by
Positive retesting from original Negative
Confirmed Positive sample Test for H5N1 or other AIV or
H1 or H3 Influenza B
8/2/2009 305
Submission of Tissue Specimens for the Pathologic
Evaluation of Pandemic Influenza A(H1N1) 09 Virus
• Central (hilar) lung with segmental
bronchi, right and left primary bronchi,
trachea (proximal and distal)
• Representative pulmonary
parenchyma from right and left lung
• For patients with suspected
myocarditis, encephalitis, or
rhabdomyalysis, myocardium (right
and left ventricle), central nervous
system (cerebral cortex, basal ganglia,
pons, medulla, and cerebellum), and
skeletal muscle, respectively
• Any other organ showing significant
gross or microscopic pathology
8/2/2009 306
Pandemic Influenza A(H1N1) 09 Virus
Submission of Specimens
• General Guidelines for Shipping
Pathology Specimens:
• Packaging and Shipping
Guidelines Layout of Bio Containment
:BL3(+)
– Formalin-fixed wet tissues OL: Outer lobby
S: Shower
– Formalin-fixed paraffin- IL: Inner Lobby
LAB: Laboratory
embedded blocks
– Glass slides with sections from
paraffin-embedded blocks
– Fresh frozen tissue
8/2/2009 307
“Pandemic (H1N1) 2009”
NRVL Submission of Specimens
• Postal address:
Medical Microbiology,
CRID Building,
University College Dublin,
Belfield,
Dublin 4,
Ireland.
Bio containment :BL3(+) Two http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPande
microbiological safety cabinets micInfluenza/SwineInfluenza/Advic
(msc ) class I and class I/ III) at eforHealthProfessionals/Laboratory
NVRL Testing/File,3876,en.pdf
8/2/2009 308
NVRL Influenza A(H1N1)v Laboratory Test
Schedule During early Phases of Mitigation
• Due to the high number of samples received for
Influenza A(H1N1)v testing NRVL has revised their
laboratory testing schedule which is outlined
below:
• Daily Laboratory testing of respiratory samples for
Influenza A (H1N1)v
• Samples need to arrive to the laboratory by 11am
in order to be processed that day
• The results for Influenza A (H1N1)v is 72 hours
from receipt of the sample but are subjected to
turnaround times due to specimen volume
• In addition the 72 hour TAT may be exceeded in
cases of weakly positive samples
• Results will be issued to requesting clinicians
within 96 hours of receipt of sample (Hard copy)
• For patients with serious clinical manifestations http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/
weekend testing is available and can be accessed SwineInfluenza/AdviceforHealthProfessionals/L
through the clinical team (087 9806448) aboratoryTesting/File,3875,en.pdf
NVRL Procedure for Packaging Transport of
Specimens for Influenza Virus
1. The specimen (swab container) to be sent should be wrapped in absorbent
material (tissue paper or cotton wool which will act as absorbent material
in event of a spillages) and placed in a secure secondary container
(preferably plastic)
1. These containers may be purchased from Sarstedt
2. This container should be placed in a biohazard bag with the completed
patient information form positioned in the special pouch section
3. The biohazard bag with the sample should be placed in a padded (jiffy
bag)envelope
4. The envelope should be labelled with a hazard warning label, “Diagnostic
Specimen”
5. The package should be addressed to: National Virus Reference Cylindrical protective containers meet all the
requirements of the European standard EN 829 and the P
Laboratory 650 packaging regulations for secondary packaging.
University College Dublin All protective containers have absorbent linings.
Belfield
Dublin 4.
6. Please avoid use of staples for closure of packages, as these present a
safety hazard to the laboratory staff
7. Please include the name and address of the sender to be contacted in case
of damage or leakage to the package during transport
8. Specimens should reach the laboratory within 24 hours. Once taken and
while awaiting transportation the specimen should be refrigerated at 4oC
(but not frozen)
9. The specimen may be transported at room temperature, but it should not
be kept unrefrigerated for more than 12 hours
Pandemic Influenza A(H1N1) 09 Virus
Who Submission of Specimens
• All samples from “highly suspicious cases” must be promptly
referred to NVRL for investigation, as per agreed procedures
• Any influenza strains detected should be provisionally characterised
at the NVRL urgently and referred with available phylogenetic data
urgently to the WHO Collaborating Centre in London for
confirmation and sub typing (occasionally occurs)
• Dr A. Hay
• WHO Collaborating Centre for Reference and Research on Influenza
• National Institute for Medical Research
• Mill Hill, London NW7 1AA, United Kingdom
• Fax: +44 208 906 44 77
• Email: whocc@nimr.mrc.ac.uk
• http://www.nimr.mrc.ac.uk/wic/
8/2/2009 311
NRVL Testing for Pandemic Influenza A(H1N1) 09 Virus
• 1. Health and Safety regulations on biological
hazards (Safety, Health and Welfare at Work
Act 2005 (No. 10 of 2005)
• 2. European Agreement concerning the
International Carriage of Dangerous Goods by
road (ADR) Regulations (2007 edition)
• 3. S.I. No 29 of 2004 - Carriage of Dangerous
Goods by Road Regulations, 2004
• Biosafety: “Directive 90/679/EEC in S.I. No.
248/1998 — Safety, Health and Welfare At
Work (Biological Agents) (Amendment)
Regulations, 1998.”
8/2/2009 312
Pandemic Influenza A(H1N1) 09 Virus
International Shipment Protocol
As with all clinical specimens, respiratory specimens should
be packaged and transported to the virology laboratory in
accordance with national and international guidelines.
Contact the National Virus Reference Laboratory or local
laboratory for advice if concerned!
8/2/2009 313
Pandemic Influenza A(H1N1) 09 Virus
Who Shipment Protocol
Adapted from WHO E-tool-Intro
Shipping requirements for Pandemic Influenza A(H1N1) 09
Virus specimens are described under:
http://www.who.int/csr/resources/publications/swineflu/in
structions-shipments/en/index.html
All Shippers Must take the E-tool-intro coarse to be able to
ship Infectious Substances “Category A”
8/2/2009 314
Pandemic Influenza A(H1N1) 09 Virus
Who Shipment Protocol
• If the shipment also includes other dangerous
goods (such as liquid nitrogen or dry ice),
shippers must be trained appropriately in the
transport of those goods
• Additional information can be found in the WHO
document “Guidance on regulations for the
transport of infectious substances”, available at:
• http://www.who.int/csr/resources/publications/
biosafety/WHO_HSE_EPR_2008_10/en/index.ht
ml
8/2/2009 315
Pandemic Influenza A(H1N1) 09 Virus
Who Submission of Specimens
• Shippers should note:
• Specimens collected directly from humans or animals that
are suspected or confirmed to be infected with the
Pandemic Influenza A(H1N1) 09 Virus , including
specimens from the respiratory tract (swabs) and blood
specimens, should be shipped as:
• "BIOLOGICAL SUBSTANCE, CATEGORY B" and assigned
to UN 3373
• Pandemic Influenza A(H1N1) 09 Virus cultures (i.e. virus
isolates) must be shipped as:
• Category A "INFECTIOUS SUBSTANCE; AFFECTING
HUMANS" and assigned to UN 2814
8/2/2009 316
Pandemic Influenza A(H1N1) 09 Virus
Who Shipment of Specimens
• Category A , Category B, Or Exempt
• Packaging Samples
• All samples must be packaged using triple packaging.
• Triple packaging provides three layers of containment to
protect the substances being shipped
• These layers are primary, secondary, and outer containers.
• The following diagram shows the basic concept of triple
packages
Must be
packaged using
triple packaging
8/2/2009 317
This Packaging is Used For Category A
Infectious Substances
8/2/2009 318
Category A: Markings and Labels
MARKINGS
• All shippers must properly mark and label
Category A packages. The following is a list of markings
and labels for Category A packages:
Markings
• Shipper’s name, address, and telephone number
u 4G/CLASS 6.2/02
• Receiver’s name, address, and telephone number n F/BVT 312103
• Name and telephone number of responsible person (who is
available 24 hours a day until shipment arrives) INFECTIOUS SUBSTANCE,
AFFECTING HUMANS
• UN Specification Marking UN2814
• Proper Shipping Name and UN Number
LABELS
Labels
• Infectious substance label
• Package orientation label (only used when primary container
exceeds 50ml)
8/2/2009 319
Pandemic Influenza A(H1N1) 09 Virus
Category A Packing Requirements
• Primary container is leakproof
• Secondary container is leakproof
• Outer container is rigid Triple Packaging Example
• Pressure tested at 95kPa
• Drop tested from 9m
• Puncture tested at 7kg
• UN specification marking
• Shipper must be trained
8/2/2009 320
Steps For Packaging
Category A Samples
Swine influenza A(H1N1)
1. Open secondary container. virus cultures (i.e. virus
isolates ) must be shipped
2. Insert absorbent material. as:
3. Don gloves. Category A "INFECTIOUS
SUBSTANCE; AFFECTING
4. Cushion primary container. HUMANS" and assigned to
UN 2814.
5. Place primary container in secondary container.
Needs
6. Doff gloves. Dangerous Goods
Declaration
7. Close secondary container.
8. Place secondary container in outer container.
9. Insert laboratory test instructions and description of materials.
10.Close outer container.
8/2/2009 321
Dangerous Goods Declaration
• All shipments of Category A
pathogens require a properly
completed Dangerous Goods
Declaration. This declaration
must be signed by the
shipper and serves as a legal
contract between the shipper
and operator
• Samples classified as
Category B or Exempt do not
require this form
Completed Form
8/2/2009 322
Air Waybill
• All goods being
shipped by air must
have a completed
Air Waybill
8/2/2009 323
This Packaging is Used For Category B
Infectious Substances
8/2/2009 324
Category B
Packaging Requirements
• Primary container is leakproof
• Secondary container is leakproof
• Outer container: Either secondary or outer container is rigid
– If the shipment is transported by air, the outer container must be rigid
• Pressure tested at 95kPa
• Drop tested from 1.2m
8/2/2009 325
Category B: Markings and Labels
• All shippers must properly mark and label MARKINGS
Category B packages. The following is a list
of markings and labels for Category B
packages:
Markings
• Shipper’s name, address, and telephone number UN 3373
BIOLOGICAL SUBSTANCE,
CATEGORY B
• Receiver’s name, address, and telephone number
• UN Number
• Proper Shipping Name
Labels
• None are required (unless shipping with dry ice)
8/2/2009 326
Steps For Packaging Category B Sample
Specimens collected directly
1. Open secondary container. from humans or animals that are
suspected or confirmed to
2. Insert absorbent material. be infected with the swine
influenza A(H1N1) virus,
3. Don gloves. including specimens from the
respiratory tract (swabs) and
4. Cushion primary container. blood specimens, should be
shipped as :
5. Place primary container in secondary container.
"BIOLOGICAL
6. Doff gloves. SUBSTANCE, CATEGORY B"
7. Close secondary container. and assigned to UN 3373.
8. Place secondary container in outer container. Does Not Need
Dangerous Goods
9. Insert laboratory test instructions and description of Declaration
materials.
10. Close outer container.
8/2/2009 327
Exempt Packaging Requirements
• Primary container is leakproof
• Secondary container is leakproof
• Outer packaging must be of adequate
strength
8/2/2009 328
Exempt Packaging Requirements
Primary container (leakproof)
Secondary container
(leakproof)
Absorbent and cushioning
material
Outer packaging
8/2/2009 329
Exempt Marking Labels
• All shippers must properly mark and label MARKINGS
Exempt packages. The following is a list of
markings and labels for Exempt packages:
• Markings
• Shipper’s name, address, and telephone number
EXEMPT HUMAN SPECIMEN
• Receiver’s name, address, and telephone number
• Proper Shipping Name
EXEMPT ANIMAL SPECIMEN
Labels
• None are required (unless shipping with dry ice)
8/2/2009 330
Steps For Packaging Exempt Sample
1. Open secondary container.
2. Insert absorbent material.
3. Cushion primary container.
4. Place primary container in secondary container.
5. Close secondary container.
6. Place secondary container in outer container.
7. Insert laboratory test instructions and description of materials.
8. Close outer container.
8/2/2009 331
Health Protection Agency (HPA)
Cat B Packaging Poster
8/2/2009 332
Biosaftey :
Spill Clean-up Procedure
1. Wear gloves and protecting clothing, including face and eye
protection if indicated
2. Cover the spill with a cloth or paper towels to contain it
3. Pour an appropriate disinfectant over the cloth or paper
towels and the immediately surrounding area (5% bleach
solutions are generally appropriate, but for spills on aircraft,
quaternary ammonium disinfectants should be used)
4. Apply the disinfectant concentrically beginning at the outer
margin of the spill area, working towards the centre
5. After about 30 min, clear away the materials. If there is broken
glass or other sharps are involved, use a dustpan or a piece of
stiff cardboard to collect the materials and deposit them into a
puncture-resistant container for disposal
6. Clean and disinfect the area of the spillage (if necessary, repeat
steps 2–5)
7. Dispose of contaminated materials into a leak-proof, puncture-
resistant waste disposal container
8. After successful disinfection, report the incident to the
competent authority and inform them that the site has been
8/2/2009 333
decontaminated
Pandemic Influenza A(H1N1) 09 Virus
Vaccine For Ireland
In Ireland advance purchase agreements with two
manufacturers for the procurement of 7.7 million
doses of pandemic vaccine have been negotiated!
1. Novartis
2. ?
8/2/2009 334
Canadian Lab Working on
Pandemic Influenza A(H1N1) 09 Virus Vaccine
• No Vaccine available at this time!
NML Winnipeg
Warning: Fake vaccine in
Manilla July ,30 ,2009
• Late on May 6, Canada's National
Microbiology Laboratory first
completed the sequencing of the virus,
publishing the result to GenBank Influenza A H1N1 virus is seen in an
image taken using an electron
•
microscope, at PHAC's National
Samples from Mexico, Nova Scotia and Microbiology Laboratory. (Public
Health Agency of Canada, National
Ontario had the same sequence, ruling Microbiology Laboratory)
out genetic explanations for the greater
severity of the Mexican cases
8/2/2009 335
Pandemic Influenza A(H1N1) 09 Virus
Vaccine Resource Update
• HX: Have been available for over 50 years. Generally, they are
trivalent, i.e. they contain three different, inactivated virus strains,
either whole viruses or parts or subunits of them
– Because the flu virus is changing its antigenic shape constantly
(either in minor drifts or in major shifts), the composition of the
flu vaccine needs to be adapted to these changes regularly
• The monitoring of these changes is done by the Global Influenza
Surveillance Network of the World Health Organization (WHO)
– At the beginning of each year the WHO makes a
recommendation for the strains to be included into the vaccine
for the coming influenza season
• The following recommendations were provided
to the WHO Director-General:
– Immunize their health-care workers as a first priority to
protect the essential health infrastructure
• SAGE suggested the following groups for
consideration, noting that countries need to
determine their order of priority based on
country-specific conditions:
– Pregnant women
– Those aged above 6 months with one of several chronic medical
conditions
– Healthy young adults of 15 to 49 years of age
– Healthy children
– Healthy adults of 50 to 64 years of age
– Healthy adults of 65 years of age and above
http://www.who.int/csr/disease/swineflu/notes/h1
n1_vaccine_20090713/en/index.html
8/2/2009 336
Vaccine Technology Overview
• Traditional Egg-based Process (last 50 years) • Cell Culture Process (1990’s)
– Grown in eggs – Mammalian (Kidney) cell culture
– Moderate specific to original strain (growth of epidemic – Vaccine are not grown on the tissue but in the single cells of
viruses in eggs result in variants that are antigenically distinct the tissue
from the original viruses – Highly specific to original strain (strains grown in cell cultures
– Low Yield (approx 1-3 eggs per dose) equal the original clinical isolates)
– Allergies to egg albumin? – High Yield
– Potential impurities in eggs (antibiotics, other viruses) may – Virus grown in mammalian cell culture is therefore more
cause sterility problems representative of the circulating wild type virus than that
– Long Process (6-12 months) grown in eggs
– A flu pandemic could probably not be contained and defeated – Cell culture based systems, however, could be rapidly
on egg-based production, because the production takes too expanded and scaled up in times of emergency
long and eggs don’t grow on demand – Up -front costs for operational readiness of such plants (with
– Emerging endemic viruses sometimes do not grow at all in its huge fermenters) are much higher than the costs for egg –
eggs based systems
– Egg-based production of flu vaccines is well established and – Ie. Polio Vaccine
cost-effective – Example: Pharmaceutical company - Novarits
– Example: Pharmaceutical company- Glaxo-Smith-Kline (GSK)
• Transient Expression of haemagulltinin
– Insect cell culture
– Very High Yield
– Not very well established but is cost effective
– Low production time
8/2/2009 337
Vaccine Development
Classical Reassortment
• The goal of reassortment is to combine the desired
HA and NA antigens from the target strain (flu strain
1) with genes from a harmless strain that grows well
in an egg (flu strain 2)
• The illustration details the following steps in creating
the vaccine:
– Flu strains 1 and 2 are injected into a fertilized
chicken egg
– The genes from flu strain 1 multiply and mix with
the genes from flu strain 2, forming as many as
256 possible gene combinations
– Researchers search the many combinations for the
flu strain that contains the HA and NA genes from
flu strain 1 and remaining genes from flu strain 2
that ensures that it is able to grow efficiently in
eggs.
– This new reassortant flu strain and two other flu
strains will make up next year’s vaccine.
• This image is in the public domain. Please credit the
National Institute of Allergy and Infectious Diseases
(NIAID).
8/2/2009 338
Vaccine Development
Reverse Genetics
• Reverse Genetics
• A flu virus contains eight gene segments. One of the gene
segments codes for the surface antigen hemagglutinin (HA) and
another codes for the surface antigen neuraminidase (NA)
• Scientists can custom-make a flu strain by assembling genes
that code for the desired features. Two genes representing the
HA and NA antigens are selected from the target strain (flu
strain 1), while the remaining six genes come from a virus that's
time-tested for its ability to grow inside an egg (flu strain 2).
(Although the influenza virus actually uses RNA as its genetic
material, the researchers make complementary pieces of DNA
because DNA is easier to work with.)
• The illustration details the following steps in creating the
vaccine:
– After removing the dangerous part of the HA gene, scientists
splice the HA and NA genes from flu strain 1 into circular
pieces of DNA called plasmids.
– Additional plasmids are created using the remaining six genes
found in flu strain 2.
– Scientists insert the HA and NA plasmids from flu strain 1 and
the six plasmids carrying genes from flu strain 2 into animal
cells growing in the laboratory.
– The genes in the plasmids instruct the animal cells to make
the desired new flu strain
• This image is in the public domain. Please credit the National Institute
of Allergy and Infectious Diseases (NIAID).
8/2/2009 339
Pandemic Influenza A(H1N1) 09 Virus Vaccine Development Process
Seasonal 1. Collection of specimens and disease/epidemiology data
(All year round)
A(H1N1) 09
2. Diagnosis and virus isolation ,preliminary analysis
(Hrs to 3 wks)
2a. Virus Isolation in eggs
(1-3 wks)
3. Ferret antisera production Vaccine
development
(3-5 weeks) Approx 6 -12
months
4. Thorough antigenic and genetic analysis
(1-3 wks)
4a. Serological Studies
(3-16 wks)
5.Review and selection of candidate viruses for vaccine use
(1-3 wks)
6a. Classical Reassortment of 6b. Reassortment of high
high growth viruses growth using reverse genetics
(3-4wks) and full safety testing (8 wks)
7a. Antigenic and genetic 9a. Development of 9b. Development of 7b. Antigenic and genetic
characterizations of
8. Evaluation of growth
standardized reagents standardized reagents characterizations of
reassortments property
fir inactivated vaccines for inactivated ressortment
(3 wks)
(4wks) (6wks) vaccines (3 wks) (4wks)
8/2/2009
Availability of vaccine virus and standardised reagents
Adapted from WHO H5N1
vaccine development
Pandemic Influenza A(H1N1) 09 Virus
Vaccine Development Process Glossary
• Novel (new) subtype of human influenza A virus. This term refers to human influenza viruses that have
haemagglutinin and neuraminidase antigens that are distinct from seasonal influenza viruses and have the
potential to cause a pandemic.
• Clinical specimens (original). These are materials collected from humans, generally in order to confirm a
diagnosis. For influenza, most commonly, clinical specimens are taken from the respiratory tract (for
example, swabs and aspirated fluid) but they can be from other locations. Clinical specimens can be frozen
and stored for later use
• Influenza reference viruses. These are wild-type influenza viruses that WHO has selected as
representative of important groups of influenza viruses on the basis of extensive antigenic and genetic
studies and comparisons with viruses from many countries. As the influenza viruses evolve in nature, new
reference viruses are selected.
• Wild-type influenza viruses (synonym: virus isolates). These are influenza viruses that have been cultured
either in eggs or cells (i.e. isolated) directly from clinical specimens and have not been modified.
• “Classical” reassortment. This is a non-patented laboratory technique that is often used to make
(seasonal) candidate vaccine viruses
• Genetic reassortment. In this process genes from two or more influenza viruses are mixed in different
combinations, resulting in hybrid viruses with genetic characteristics of each parent virus. This process
occurs in nature but can also be done in a laboratory using “classical” reassortment or reverse genetics
• High-growth reassortant viruses. These are influenza viruses that have been genetically modified to grow
better in eggs for optimal vaccine production.
• Reverse genetics. This is a laboratory technique that is used to construct or modify influenza viruses and is
protected by patents in several countries. It is used to render highly pathogenic H5N1 viruses less
dangerous.
• Reagents for influenza vaccine standardization. These reagents are used to standardize the amount of
haemagglutinin protein in influenza vaccines as required by regulatory agencies. The reagents have to be
produced in large quantities so that all vaccine batches can be tested.
• Seed viruses. These are influenza viruses prepared from candidate influenza vaccine viruses by individual
manufacturers for the manufacturer’s specific vaccine-production process.
8/2/2009 341
Results of Haemagglutination Inhibition
Tests of Influenza A(H1N1) Viruses With
Post‐infection Ferret SeraA
8/2/2009 342
Viral Gene Sequences to Assist Update Diagnostics for Pandemic
Influenza A(H1N1) 09 Virus - GenBank Accession Numbers
Pandemic Influenza A(H1N1) 09 Virus
The WHO Collaborating Centre for influenza in CDC Quadruple Reassortant Lineage
Atlanta USA has posted the full
genome sequences of swine influenza (North American and Eurasian
A/California/04/2009 (H1N1) influenza virus on the Swine/Avian/Human)
GenBank sequence database.
To access, go to:
http://www.ncbi.nlm.nih.gov/sites/entrez?db=nuccore PB2
&itool=toolbar, then enter the accession number as
shown below: PB1
• PB2 gene accession number is: FJ966079 PA
• PB1 gene accession number is: FJ966080 HA
• PA gene accession number is: FJ966081 NP
• HA gene accession number is: FJ966082
• NP gene accession number is: FJ966083 NA
• NA gene accession number is: FJ966084 M
•M gene accession number is: FJ966085 NS
• NS gene accession number is: FJ966086
Tip: to access all the gene sequence records at once,
copy the following line of text and paste Classical swine, North American Lineage
it into the search bar in the above GenBank web link.
FJ966079,FJ966080,FJ966081,FJ966082,FJ966083,FJ9660 Avian, North American Lineage
84,FJ966085,FJ966086
Seasonal H3N2
Eurasian swine Lineage
8/2/2009 343
Pandemic Influenza A(H1N1) 09 Virus
Gene sequences of the currently available reassortant
candidate vaccine viruses:
• X-179A
– The accession numbers of the HA and NA gene sequences of X-179A in GenBank is:
• HA: GQ214335
• http://www.ncbi.nlm.nih.gov/nuccore/238623303
• NA: GQ214336
• http://www.ncbi.nlm.nih.gov/nuccore/238623305
• IDCDC-RG15
– The accession numbers of the HA and NA gene sequences of IDCDC-RG15 in GenBank is:
• HA: GQ219781
• http://www.ncbi.nlm.nih.gov/nuccore/238623307
• NA: GQ219782
• http://www.ncbi.nlm.nih.gov/nuccore/238623309
• IVR-153
– The accession numbers of the HA and NA gene sequences of IVR-153 in GISAID is:
• HA: EPI181843
• http://platform.gisaid.org/dante-cms/live/struktur.jdante?aid=1131
• NA: EPI181844
• http://platform.gisaid.org/dante-cms/live/struktur.jdante?aid=1131
8/2/2009 344
Pandemic Influenza A(H1N1) 09 Virus
International Vaccine Candidates
• Wild type influenza virus:
• Traditional reassortant viruses are derived only from
wild type viruses isolated and grown in hens’ eggs, or
in a validated clean cell culture system.
• A/California/7/2009 (egg isolate) – classical
reassortment and reverse genetics
• A/England/195/2009 (MDCK cell isolate) – reverse
genetics
• A/California/4/2009 (MDCK isolate) – reverse genetics
• A/Texas/5/2009 (MDCK isolate) - reverse genetics
• A/Ohio/7/2009 (MDCK isolate) - reverse genetics
• A/New York/20/2009 (MDCK isolate) - reverse genetics
8/2/2009 345
)
Pandemic Influenza A(H1N1)09Vaccine
Virus Development Summary
Candidate vaccine viruses using reverse Candidate vaccine viruses using classical Development of vaccine potency reagents Wild type viruses have been/ are being sent
genetics technology are being developed by: reassortment technology are being for inactivated vaccines against Influenza to vaccine manufacturers on request
developed by: A(H1N1) is planned in: including:
Centers for Disease Control and Prevention NIBSC, UK, from NIBSC, UK Baxter
(CDC), Atlanta USA A/California/7/2009(H1N1)swl, an egg virus enquiries@nibsc.ac.uk
rdonis@cdc.gov isolate
enquiries@nibsc.ac.uk
National Institute for Biological Standards New York Medical College, USA, from CBER FDA, USA CSL Limited
and Control (NIBSC) A/California/7/2009(H1N1)swl zhiping.ye@fda.hhs.gov
enquiries@nibsc.ac.uk zhiping.ye@fda.hhs.gov
Centre for Biologics Evaluation and Research CSL Limited, Australia, from Therapeutic Goods Administration GlaxoSmithKline Biologicals
(CBER) A/California/7/2009(H1N1)swl gary.grohmann@health.gov.au
zhiping.ye@fda.hhs.gov gary.grohmann@health.gov.au
St. Jude Children’s Research ERL NIID, Japan MedImmune
Hospital,Memphis USA mtashiro@nih.go.jp
richard.webby@stjude.org
National Institute of Infectious Diseases Microgen
(NIID), Japan
mtashiro@nih.go.jp
Nobilon International
Novartis
June 15 2007 cell cultured vaccine ready for
first stage
Omninvest Vaccines
Sanofi Pasteur
June 17 2009 Donates 10,000,000 vaccine
doses to WHO (When Ready)
Adapted from WHO vaccine policy May 18 2009 Solvay and Vivaldi
8/2/2009 346
Pandemic Influenza A(H1N1) 09 Virus
International Vaccine Candidates
Candidate influenza Parental H1N1 virus Laboratory
vaccine viruses
NYMCX-179A conventional A/California/7/2009 NYMC, USA
reassortant virus
IVR-153 conventional A/California/7/2009 CSL, Australia
reassortant virus
IDCDC –RG15 reverse A/Texas/5/2009 CDC, USA
genetics virus
CBER-RG2 reverse genetics A/California/04/2009 CBER, USA
virus
NIBRG-121 reverse A/California/7/2009 NIBSC, UK
genetics virus
8/2/2009 347
Pandemic Influenza A(H1N1) 09 Virus
NIBSC Candidate Vaccine Viruses
Candidate Parental H1N1 NIBSC code Availability
influenza vaccine virus
viruses
NIBRG-121 A/California/7/2009 09/122 Now
27/05/09
NYMCX-179A A/California/7/2009 09/124 Now
W/C 8/06/09
IVR-153 A/California/7/2009 09/144 Now
Previously VI 1525 2/06/09
8/2/2009 348
Reagents for Single Radial Diffusion Assay
of Influenza A (H1N1)v Virus Vaccine
Reagents for NIBSC code Availability
influenza Vaccine
Standardisation
A/California/7/2009 NA Mid July 2009
antigen (cell
derived)
A/California/7/2009 NA End July 2009
antigen (egg
derived)
A/California/7/2009 09/142 Now
antiserum
8/2/2009 349
Influenza A (H1N1) Vaccine Development:
NIBRG‐121 27 May 2009
• NIBRG‐121 (NIBRG‐121 reassortant virus)
• A candidate reassortant vaccine virus (NIBRG‐121) has been
developed, using reverse genetics technology, from an
A/California/7/2009(H1N1)v virus, by the National Institute for
Biological Standards and Control (NIBSC), Potters Bar,
Hertfordshire, United Kingdom.
• The haemagglutinin (HA) and neuraminidase (NA) sequences of
the A/California/7/2009(H1N1)v virus can be found on the public
web site of GenBank via the following links:
• HA sequence
– http://www.ncbi.nlm.nih.gov/nuccore/227977171?ordinalpos=1&itool=Ent
rezSystem2.PEntrez.Sequence.Sequence_ResultsPanel.Sequence_RVDocSu
m
• NA sequence
– http://www.ncbi.nlm.nih.gov/nuccore/229396468?ordinalpos=1&itool=Ent
rezSystem2.PEntrez.Sequence.Sequence_ResultsPanel.Sequence_RVDocSu
m
8/2/2009 350
Pandemic Influenza A(H1N1) 09 Virus
NIBRG‐121 (NIBRG‐121 Reassortant Virus)
• Now Available from:
• Division of Virology
• National Institute for Biological Standards and Control
• Blanche Lane, South Mimms, Potters Bar
• Hertfordshire, EN6 3QG, United Kingdom
• E‐mail: enquiries@nibsc.hpa.org.u
• k or standards@nibsc.hpa.org.uk
• http://www.nibsc.ac.uk/flu_site/viruses_reagents.html
• The candidate reassortant vaccine virus contains infectious
materials and should be handled only in appropriate containment
facilities (until completion of the above‐mentioned safety tests, it is
recommended to use biosafety level 2 plus *BSL‐2 plus+ facilities
with biosafety level 3 *BSL‐3+ practices)3
8/2/2009 351
Performance Improvement for
Irelands Vaccination Targets
Guidance on Allocating
and Targeting Pandemic
Influenza Vaccine
8/2/2009 352
US Example of Vaccination
Target Groups
• Vaccination target groups, estimated populations, and tiers for severe,
moderate and less severe pandemics as defined by the Pandemic Severity
Index (PSI)
8/2/2009 353
US Example of Vaccination Tiers
• Vaccination tiers and target groups for a severe
pandemic
8/2/2009 354
Vaccination Tiers and Targets
Performance Improvement Summary
• Dissemination of the Novel Influenza Vaccine is imperative and tiers and targets is an Great Resource for Clinicians
excellent example of the possible breakdown or needs assessment of high risk
groups!
• Incorporating the Empirical Model (HPA Model) and Pandemic Severity Index with
also interrelating tiers and targets Irelands pandemic groups and committees have
the potential to target vaccination groups effectively and assess future needs when
the Influenza A(H1N1) vaccine becomes available in the Autumn!
• Allocation of funds for the vaccine for Irelands population should be based upon a
needs assessment and not only on general assumptions of clinical attack rates in the
HPA model!
• Cost-effective planning is essential during the economic times!
• ? How much vaccine do you really need to pre-order keeping pandemic severity in
mind?
• Ireland Pre ordered 7.7 million influenza A(H1N1) vaccine dosages!
• 2nd wave could mutate with resistance! Multi-dosages/Difficult to find the balance!
• Proactive better than reactive! Finding the balance
Pandemic Severity
Pandemic Influenza
Preparedness for Ireland:
Population Vaccine Advice of the Pandemic
Influenza Expert Group;
Chapter 6 Public Health
Response: Vaccines
First Vaccine Vial from Novartis
8/2/2009 355
WHO “SAGE” Recommendations
For Vaccine Distribution July, 7, 2009
• The following recommendations were provided to the WHO Director-
General:
A. All countries should immunize their health-care workers as a first priority to
protect the essential health infrastructure !
– As vaccines available initially will not be sufficient, a step-wise approach to vaccinate
particular groups may be considered.
B. SAGE suggested the following groups for consideration, noting that countries
need to determine their order of priority based on country-specific conditions:
1. Pregnant women
2. Those aged above 6 months with one of several chronic medical conditions
3. Healthy young adults of 15 to 49 years of age
4. Healthy children
5. Healthy adults of 50 to 64 years of age
6. Healthy adults of 65 years of age and above
http://www.who.int/csr/diseas
e/swineflu/notes/h1n1_vaccine
8/2/2009 _20090713/en/index.html 356
Mass Prophylaxis Staffing Model
Bioterrorism and Epidemic Outbreak Response
Model (BERM)
• THE WEILL/CORNELL BIOTERRORISM AND EPIDEMIC OUTBREAK RESPONSE MODEL : (BERM) A MASS
PROPHYLAXIS PLANNING TOOL VER 2.0
– (originally used for smallpox planning but can be adapted to Pandemic Influenza A(H1N1) 09 Virus
• Download Excel File
• This tool may be downloaded from this Web page as a Microsoft® Excel workbook. To
download the file, right click on the link and then select "Save Target As" (Internet Explorer)
or "Save Link As" (Firefox™, Netscape®):
8/2/2009 357
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Medications
Oseltamivir and Relenza is not a
substitute for the influenza vaccine!
8/2/2009 358
Management of Influenza A(H1N1)v During the
Treatment Phase
• WHO Phase 6- HPSC- Mitigation (Stage 2)
“Treatment Phase”
• Update July ,29, 2009
– Patient has severe symptoms
– Patient is in a Defined Risk Group
Defined risk groups are:
Chronic respiratory, heart, kidney, liver, neurological disease;
immunosuppression (whether caused by disease or treatment);
diabetes mellitus; people aged 65 years and older; children <5
(children <2 are at particular risk of influenza); people on medication
for asthma, bariatric people (BMI ≥40) and pregnant women
• Chemoprophylaxis is no longer generally
recommended for contacts
– Physicians may exercise judgement in individual
cases for chemoprophylaxis
– Possible scenarios include:
• Nursing homes
• Educational residential centres
8/2/2009 359
A flu clinic in Birmingham, England!
Groups at High Risk for Complications From
Pandemic (H1N1) 2009 Virus
• High Risk groups include: • Chronic liver disease
– Cirrhosis
• Age – Inflammatory bowel disease
– Persons aged 65 years or older • Chronic metabolic disorders
– Infants aged 12–24 months; Children <5 (children <2 – Diabetes mellitus requiring insulin or oral
are at particular risk of influenza) hypoglycaemic drugs
• Pregnancy – Sickle cell anaemia and other haemoglobinopathies
– Especially during third trimester and four weeks post- • Immunosuppression and malignancy due to
partum disease or treatment
• Bariatric – Asplenia or splenic dysfunction
– BMI ≥40 – HIV infection at all stages
• Chronic respiratory disease – Malignancy
– Asthma requiring continuous or repeated use of – Patients undergoing chemotherapy or transplant
inhaled or systemic steroids or with previous leading to immunosuppression
exacerbations requiring hospital admission – Individuals on or likely to be on systemic steroids for
– Children who have previously been admitted to more than a month at a dose equivalent to
hospital with lower respiratory tract disease prednisolone at 20mg or more per day (any age) or for
– Such as cystic fibrosis in children or chronic obstructive children under 20kg a dose of 1mg per kg per day
pulmonary disease in adults – Diseases that requiring long-term aspirin therapy
• Chronic heart disease rheumatoid arthritis or Kawasaki disease
– Hemodynamically significant cardiac disease • Chronic neurological disease
– Congenital heart disease – Neuromuscular disorders
– Hypertension with cardiac complications – Seizure disorders
– Chronic heart failure – Cognitive dysfunction that may compromise the
– Individuals requiring regular medication and/or follow handling of respiratory secretions
up for ischaemic heart disease
• Chronic renal disease
Not an inclusive list!
360
8/2/2009
Pandemic Influenza A(H1N1) 09 Virus
Antivirals “Pregnant Women”
• Oseltamivir, zanamivir, amantadine, and rimantadine are all
“Pregnancy Category C" medications, indicating that no
clinical studies have been conducted to assess the safety of
these medications for pregnant women
• EU: Following a review of the available data for Tamiflu and
Relenza, the CHMP concluded that the benefits of using these
medicines in pregnant or breastfeeding women outweigh the
risks in case of an Pandemic Influenza A(H1N1) 09 Virus
pandemic
• At present, the groups identified at higher risk of influenza-
related complications from seasonal influenza and the H1N1
2009 include pregnant women in their second and especially
the third trimester and women within four weeks post-
partum.
• Experience with past pandemics demonstrates they can be
affected disproportionately compared to non-pregnant
women
• Currently, little is known about whether influenza viruses are
transmitted to the foetus through the placenta, although this
class of viruses is not considered to be teratogenic in humans
8/2/2009 361
Treatment With Antivirals
In Pregnancy Summary
• Update as of July 28 2009 from The Pandemic Influenza Expert
Group advice is that:
• “Chemoprophylaxis is no longer routinely recommended in
pregnancy
• Pregnant women with severe symptoms in the first trimester
should receive oseltamivir (Tamiflu)
• Oseltamivir (Tamiflu) should be considered for pregnant women
with mild symptoms in the first trimester if they have other
co‐morbidities
• Pregnant women with mild symptoms of influenza like illness and
no co‐morbidities in the first trimester should be observed and
oseltamivir (Tamiflu) withheld unless clinically indicated
• Pregnant women with influenza like illness in the second and third
trimesters should receive oseltamivir (Tamiflu)”
8/2/2009 362
Pandemic Influenza A(H1N1) 09 Virus
Special Considerations for Children
• Aspirin or aspirin-containing products
(e.g. bismuth subsalicylate – Pepto
Bismol) should not be administered to
any confirmed or suspected ill case of
Pandemic Influenza A(H1N1) 09 Virus
infection aged 18 years old and younger
due to the risk of Reye syndrome
• For relief of fever, other anti-pyretic
medications are recommended such as
acetaminophen or non steroidal anti-
inflammatory drugs
• Long term aspirin use in children >14
years old are considered in the high risk
category for antivirals
8/2/2009 363
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Medications
2 Classes of Medications Available
• M2 Inhibitors :Adamantanes
– Amantadine, Rimantadine
– Activity only against influenza A viruses
• Neuraminidase inhibitors
– Oseltamivir, Zanamivir. (Primivir experimental)
– Activity against influenza A and
B viruses
Class Effective Against Drug Name (INN) Brand Name Year Approved Manufacturer
M2 inhibitors Influenza A Amantadine Symmetrel 1976 Endo
(adamantane Pharmaceuticals
derivatives Rimantadine Flumadine 1994 Forest Laboratories
Neuraminidase Influenza A & B Zanamivir Relenza 1999 GlaxoSmithKline
inhibitors Hoffmann-La
Oseltamivir Tamiflu 1999 Rochene
8/2/2009 364
8/2/2009 365
Pandemic Influenza A(H1N1) 09 Virus
Antivirals Oseltamivir, Zanamivir
• Chemically related
• Different routes of administration
– Oseltamivir (Tamiflu): Tablet, suspension
– Zanamivir (Relenza): Orally inhaled powder
• Mechanism of action:
– Block active site of neuraminidase
– Reduce the amount of viral particles
released from infected cells
• Decrease shedding of influenza A and influenza B viruses
8/2/2009 366
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Treatment
• Only 2 antiviral medications
are equally efficacious when
used for early treatment
– Decrease the duration and symptoms
of uncomplicated influenza by
approximately 1 day
– Decrease viral shedding
• Early treatment with
neuraminidase inhibitors can
reduce some complications
– Otitis media, lower respiratory tract
complications, antibiotic use,
hospitalizations
8/2/2009 370
Pandemic Influenza Expert Group
(PIEG) On Antivirals
• According to the Pandemic Influenza Expert
Group (PIEG)
• Treatment with NAI (within 48 hours) for
seasonal influenza leads to reduction of:
• 0.4 -1 days in duration of symptoms
• 25-43% of complications requiring antibiotics
• 55% in Lower Respiratory Tract Infections
• 34% in need for antibiotics
• 59% in hospitalisations
• 44% in otitis in children
8/2/2009 371
Pandemic Influenza A(H1N1) 09 Virus
Neuraminidase Inhibitor Resistance
• Cross-resistance
• Frequency
– 5.5% in oseltamivir pediatric
treatment study (U.S.) The Strategy for the
– 18% in oseltamivir pediatric Control of
Antimicrobial
treatment study (Japan) Resistance in Ireland
• Global Neuraminidase Inhibitor
Susceptibility Network
8/2/2009 372
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Resistance
• This Pandemic Influenza A(H1N1) 09 Virus is sensitive (susceptible) to the
neuraminidase inhibitor antiviral medications oseltamivir and zanamivir.
• It is resistant to the adamantane (m-2) antiviral medications amantadine
and rimantadine
8/2/2009 373
Pandemic Influenza A(H1N1) 09 Virus
Antivirals
Great Resource for Clinicians
• Director Schuchat said that the virus was
resistant to Amantadine and Rimantadine
• Susceptible to Oseltamivir (Tamiflu) and
Zanamivir (Relenza)
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/Guidance/Pandemi
cInfluenzaPreparednessforIreland/File,3257,en.pdf
8/2/2009 374
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Resistance
• HX of neuraminidase segment gene (position 274 in N2 numbering system)
– This mutation has been described in the past, associated with so-called secondary resistance to
oseltamivir acquired during treatment of both H1N1 and H5N1 virus infections
• The World Health Organization recently announced the identification of three
persons with oseltamivir-resistant Pandemic Influenza A(H1N1) 09 Virus infection; all
viruses had the same mutation that confers resistance, H274Y (H275Y in N2
numbering), in the neuraminidase protein
• On July 21, 2009 Canada reported its first case of oseltamivir resistant pandemic
influenza A (H1N1). The strain was isolated from a 59 year old male from Quebec
with underlying medical conditions who received post-exposure prophylaxis following
illness in a family member (the man's son). The isolate had a mutation at the H274Y
location
• On July 3, The Hong Kong Department of Health reported a resistant virus isolated
from a 16 year-old girl who had a fever upon arrival at the Hong Kong International
airport on June 11, 2009. Her symptoms began prior to boarding the plane in San
Francisco, California. The patient had not taken antiviral agents and reported no http://www.ecdc.europa.eu/en/fil
es/pdf/Health_topics/0907_Influe
illness among close contacts. nza_AH1N1v_Resistance_TA_Oselt
amivir.pd
• On July 2, 2009, a person infected with an oseltamivir-resistant novel influenza A
(H1N1) virus was reported from Japan from an illness on May 15, 2009. This patient
also became ill while receiving oseltamivir for chemoprophylaxis.
• On June 29, 2009, the National Influenza Center in Denmark reported an oseltamivir-
resistant novel influenza A (H1N1) virus from an unknown date. The virus was
isolated from a patient who became ill while taking a chemoprophylaxis dose of
oseltamivir to prevent influenza infection after exposure to an ill person
8/2/2009 375
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Resistance
• Another important mutation that has been identified in some isolates from
Shanghai is the E627K mutation in the PB2 gene This mutation renders the
virus more fit to replicate at 33°C, the temperature of the human nose during
winter months
• The PB2 gene of the 2009 H1N1 virus is derived from an avian source and,
accordingly, contains a genetic sequence optimizing replication at 41°C, the
normal temperature of avian species
• In conclusion:
• The emergence of the E627K mutation and its potential for worldwide
progression could foster more efficient spread of the virus, increasing the
proportion of persons expected to become ill
• July 5 2009: Southern hemisphere sees H3N2 seasonal flu variant:
• Laboratory experts in the southern hemisphere are reporting the circulation
of a drifted strain of the seasonal H3N2 influenza virus, raising the threat of a
vaccine mismatch for the northern hemisphere's upcoming flu season
• WHO collaborating centres are investigating!
8/2/2009 376
Pandemic Influenza A(H1N1) 09 Virus
Antiviral Treatment
• Oseltamivir: ≥1 year; Zanamivir: ≥7 years
– Dosage varies by age and weight
• Early treatment of Swine influenza
– Ideally, begin treatment within 48 hours of illness onset
• Duration: 5 days
• Antiviral treatment may be started at any time if patient is symptomatic, not just
within 48 hours of onset of symptoms
• “In January 2009, the European Commission granted a Commission Decision to a type II variation (II/61) to update of section 4.2 of the SPC to provide instructions on the extemporaneous preparation of liquid
formulations of Tamiflu using the contents of the 30mg, 45mg and 75mg capsules. The rational for this extemporaneous solution is that Tamiflu powder for oral suspension was developed and is approved and
commercialised in the EU for children above 1 year of age and adults who cannot swallow capsules. This formulation has a shelf life of 24 months and it is anticipated that limited availability of this formulation may
occur specifically in emergency situations such as an influenza pandemic or more simply when supplies of the oral suspension are not available. Development activities were undertaken to explore the feasibility of
preparing extemporaneous formulations at home by the patient, parent or guardian using readily available sweetened food products to mask the bitter taste of the capsule content. This type II variation (II/61) was
submitted to provide instructions in the SPC and the PL on how this liquid extemporaneous preparation should be made using the 30 mg, 45 mg and 75 mg capsules of Tamiflu.
• The CHMP is now working in close collaboration with the MAH (Roche) to give practical guidance on how Tamiflu can be dosed from this extemporaneous solution to be given to children less than 1 year of age.
This practical guidance should soon be agreed and released.”
• Cited from: FOLLOW-UP RECOMMENDATIONS FROM CHMP ON Novel Influenza (H1N1) outbreak Tamiflu (oseltamivir) Relenza (zanamivir) EMEA/H/A-5.3/1172 Article 5(3) of Regulation (EC) No 726/2004
http://www.emea.europa.eu/humandocs/PDFs/EPAR/tamiflu/32609509en.pdf
8/2/2009 377
EMEA Dosing recommendations for
antiviral chemoprophylaxis of children
younger than 1 year using oseltamivir
• Age Recommended prophylaxis dose
for 10 days :
• <3 months
– Not recommended unless situation
judged critical due to limited data on
use in this age group
• 3-5 months 20 mg once daily
• 6-11 months 25 mg once daily
• During a pandemic, if Tamiflu is http://www.emea.europa.eu/h
umandocs/PDFs/EPAR/tamiflu/
prescribed to children under the age 32609509en.pdf
of one, the recommended dosage is
2 to 3 mg per kg body weight
•
8/2/2009
(EMEA May 8 report) 378
Oseltamivir Tx for Ireland
Treatment Schedule: Update June, 22, 2009
• Adults - The following actions commence on receipt of test result of a
probable or confirmed case:
– Chemoprophylaxis for close contacts as (1 course = 10 days)
• Oseltamivir 75mg every 12 hours for 10 days
– (PIEG suggests dose to be reduced by 50% if creatinine clearance is less than
30ml/minute i.e. 75mg once a day)
Children Dose
• Children
Child aged >1yr; body weight Oseltamivir 2-3mg/kg twice daily for 5
Pandemic Influenza days
Preparedness for Ireland:
Advice of the Pandemic Child aged ≥1yr; body weight 15kg or Oseltamivir 30mg 12-hourly for 5 days
Influenza Expert Group lower
Chapter 5 Table of Contents
Public Health Response: 16-23kg (3yr-<7yrs) Oseltamivir 45mg 12-hourly for 5 days
Antivirals
http://www.hpsc.ie/hpsc/A- 23-40kg Oseltamivir 60mg 12-hourly for 5 days
Z/EmergencyPlanning/AvianPandemicInfluen
za/Guidance/PandemicInfluenzaPreparednes
sforIreland/File,3257,en.pdf Child 40kg or over Oseltamivir 75mg 12 hourly for 5 days
8/2/2009 379
Tamiflu (Oseltamivir) Treatment for
Pandemic Influenza A(H1N1) 09 Virus for Ireland
Adult dose/ pregnancy and breastfeeding mothers
• Treatment for acute illness: 75 mg PO bid for 5 days
• Prophylaxis: 75 mg PO qd for 10 days
– Paediatric dose (possible hospital admission)
• Treatment for acute illness and age <1 year
– 2 to 3 mg per kg once daily for 5 days
• Treatment for acute illness and age >1 year
– <15 kg: 30 mg PO bid for 5 days
– 15-23 kg: 45 mg PO bid for 5 days
– 23-40 kg: 60 mg PO bid for 5 days
– >40 kg: Administer as in adults for 5 days
• Chemoprophylaxis and age <1 year
– 2 to 3 mg per kg once daily for 10 days
– <3 months: Data limited; not recommended unless situation judged critical (Possible Hospital
admission)
• Chemoprophylaxis and age >1 year
– <15 kg: 30 mg PO once daily or 10 days
– 15-23 kg: 45 mg PO once daily or 10 days
– 23-40 kg: 60 mg PO once daily for 10 days
– >40 kg: Administer as in adults for 10 days
• There currently is no paediatric suspension available in Ireland
• All paediatric dosages available in oral suspension and not to exceed 10 days
8/2/2009 • A supply of 75mg, 45mg and 30mg capsules is available 381
Tamiflu (Oseltamivir) Resources
• Tamiflu (oseltamivir)
Tamiflu is taken by mouth. The European Medicines Agency (EMEA) has
reviewed the use of Tamiflu (ostelamivir) . The Agency's Committee for
Medicinal Products for Human Use (CHMP) has recommended that during
the pandemic:
– Tamiflu can be used in children younger than one year of age
– Tamiflu can be used in women who are pregnant or breastfeeding
• Tamiflu 75mg Capsule Summary of Product Characteristics
Tamiflu 75mg Capsule Patient Information Leaflet
Tamiflu Oral Suspension Summary of Product Characteristics
Tamiflu Oral Suspension Patient Information Leaflet
Tamiflu 30mg Hard Capsule Summary of Product Characteristics
Tamiflu 45mg Hard Capsule Summary of Product Characteristics
Tamiflu 30mg/45mg Hard Capsule Patient Information Leaflet
8/2/2009 382
Pandemic Influenza A(H1N1) 09 Virus
Oseltamivir (Tamiflu) Adverse Effects
• Metabolized by liver, excreted in • Dosage reduction:
urine – Kidney disease
• Adverse effects • Severe Effects
• Gastrointestinal (nausea, vomiting)
Other side effects may include: • 1. Hallucinations
• headache 2. Delusional behaviour
3. Loss of contact with reality
• diarrhoea 4. Convulsions
• nausea 5. Nausea and vomiting
• vomiting 6. Psychosis
• nasal irritation 7. Suicidal behaviour
8. Death of both adults and
• bronchitis children
• cough
• sinus inflammation
• ear, nose and throat infections
• dizziness
8/2/2009 383
Oseltamivir (Tamiflu)
Children Dosing Fact Sheets
8/2/2009 384
Oseltamivir (Tamiflu)
Children Fact Sheets
8/2/2009 385
Relenza (Zanamivir) Treatment for
Pandemic Influenza A(H1N1) 09 Virus for Ireland
– Adult dose , pregnancy and breastfeeding
mothers
• Treatment for acute illness:
– 10 mg inhaled orally bid for 5 d
• Chemoprophylaxis of household contact:
– 10 mg inhaled orally qd for 10 d (initiate within 48 hrs)
• Chemoprophylaxis for community outbreak:
– 10 mg inhaled orally qd for 28 d (initiate within 5 d of outbreak)
– Paediatric dose
• Treatment for acute illness
– <7 years: Not established
– >7 years: Administer as in adults
• Chemoprophylaxis in household contact of high risk
group
– <5 years: Not established
– >5 years: Administer as in adults
• Chemoprophylaxis in community outbreak
– Adolescents 12-16 years: Administer as in adults
8/2/2009 386
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) Resources
• Relenza - Summary of Product Characteristics (SmPCs)
Relenza is taken by inhalation. The European Medicines
Agency (EMEA) has reviewed the use of Relenza
(zanamivir). The Agency's Committee for Medicinal
Products for Human Use (CHMP) has recommended that
during the pandemic:-
- Relenza can be used in women who are pregnant or
breastfeeding -
Relenza inhalation powder Summary of Product Characteristics
Relenza inhalation powder Patient Information Leaflet
8/2/2009 387
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) Adverse Effects
• Not metabolized, excreted – headache
unchanged – diarrhea
• Adverse effects – nausea
– Gastrointestinal (nausea, – vomiting
diarrhea) – nasal irritation
– Headache – bronchitis
– Cough (bronchospasm in – cough
persons with pulmonary – sinus inflammation
disease: not recommended – ear, nose and throat infections
for persons with underlying
pulmonary disease) • dizziness
8/2/2009 388
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) 10 Steps
• The Diskhaler has three parts:
• Don’t take it apart until you have looked at the step-by-step
guide
• The Rotadisk fits into the Diskhaler
• The Rotadisk fits onto the wheel of the Diskhaler
• Each of the four blisters on the Rotadisk contains a single dose of Relenza
8/2/2009 389
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) Application Steps
1 Remove the blue cover
– Check that the mouthpiece is clean, inside and
outside
2 Hold the white sliding tray as shown and pull it
out until it stops
3 Gently squeeze the finger grips on the sides of
the white tray. Remove the tray from the main
body
– The white tray should come out easily
4 Place a new Relenza Rotadisk on the wheel
– Make sure the printed side is up, with the blisters
facing downwards. The blisters fit into the holes in
the wheel.
5. Push the white tray back into the main body If
your not ready replace the blue cover 390
8/2/2009
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) Application Steps
6. Hold the Diskhaler horizontally
• To get your dose ready to inhale:
• Do this just before you inhale a dose
a) Flip the lid up as far as it will go
b) The lid must be fully vertical, to make sure
that the blister is pierced completely
c) Push the lid back down.
• Your Diskhaler is now ready for use. Keep it
horizontal until you have inhaled your dose
• Use diskhaler immediately after set up!
8/2/2009 391
Pandemic Influenza A(H1N1) 09 Virus
Zanamivir (Relenza) Application Steps
7. Don’t put the Diskhaler into your mouth yet Breathe out as
far as is comfortable, keeping the Diskhaler away from
your mouth
– Don’t blow into the Diskhaler. If you do,you’ll blow
the powder out of the Rotadisk
• To prepare the next blister (the second part of your
dose):
8. Pull the white tray out as far as it will go (don’t remove it
completely), then push it back in again
• This will turn the wheel so the next blister will appear
– Repeat if necessary until a full blister is positioned under the
piercing needle.
– Repeat steps 6 and 7 to inhale the medicine.
9. After you’ve inhaled the full dose (normally two blisters):
• Wipe the mouthpiece with a tissue and replace the blue
cover. It’s important to keep the Diskhaler clean.
• To replace the Rotadisk:
10. When all four blisters are empty, remove the Rotadisk from
the Diskhaler and insert a new one, using steps 1 to 5.
8/2/2009 392
Zanamivir (Relenza) Fact Sheets
8/2/2009 393
Summary for
Oseltamivir and Relenza Treatment for
Pandemic Influenza A(H1N1) 09 Virus Final Draft for Ireland
Oseltamivir Relenza
– Adult dose/ pregnancy and breastfeeding mothers – Adult dose , pregnancy and breastfeeding mothers
• Treatment for acute illness: 75 mg PO bid for 5 days
• Chemoprophylaxis : 75 mg PO once daily for 10 days • Treatment for acute illness:
– Paediatric dose (possible hospital admission) – 10 mg inhaled orally twice a day for 5 days
• Treatment for acute illness and age <1 year • Chemoprophylaxis of household contact:
– 2 to 3 mg per kg once daily for 5 days – 10 mg inhaled orally once a day for 10 d (initiate within
• Treatment for acute illness and age >1 year 48 hrs)
– <15 kg: 30 mg PO twice a day for 5 days • Chemoprophylaxis for community outbreak:
– 15-23 kg: 45 mg PO twice a day for 5 days
– 10 mg inhaled orally once a day for 28 d (initiate within
– 23-40 kg: 60 mg PO twice a day for 5 days 5 days of outbreak)
– >40 kg: Administer as in adults for 5 days
• Chemoprophylaxis and age <1 year – Paediatric dose
– 2 to 3 mg per kg once daily for 10 days • Treatment for acute illness
– <3 months: Data limited; not recommended unless
situation judged critical Hospital admission – <7 years: Not established
possible
– >7 years: Administer as in adults
• Chemoprophylaxis and age >1 year
– <15 kg: 30 mg PO once daily or 10 days • Chemoprophylaxis household contact
– 15-23 kg: 45 mg PO once daily or 10 days – <5 years: Not established
– 23-40 kg: 60 mg PO once daily for 10 days
– >40 kg: Administer as in adults for 10 days
– >5 years: Administer as in adults
• Chemoprophylaxis community outbreak
• There currently is no paediatric suspension available in – Adolescents 12-16 years: Administer as in
Ireland adults
• All paediatric dosages not to exceed 10 days
• A supply of 75mg, 45mg and 30mg capsules is available
Chemoprophylaxis for close contacts is not generally recommended during the treatment phase
Antiviral treatment is now indicated for patients who are in a defined risk group or have clinically
8/2/2009 severe illness according to Algorithms or clinically judged high risk 394
Tamiflu (Oseltamivir) Liquid
Extemporaneous Preparation
• Extemporaneous Preparation:
• When Tamiflu solution is not available
capsules can be opened and placed in
bowl with additives
• Roche has provided guidelines for the
extemporaneous preparation for the
administration of Tamiflu dosages
• Again, “oral solution is not available in
Ireland!”
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInflu
enza/SwineInfluenza/AdviceforHealthProf
essionals/AntiviralMedicines/File,3858,en.
8/2/2009 pdf 395
Guidelines for Reporting Suspected Adverse Reactions
to Antiviral Medicines an Influenza Pandemic
“Pharmacovigilance”
• How to report?
The most efficient way to report adverse reactions to the IMB in a
pandemic situation is via our online reporting system at www.imb.ie
1. On-line at www.imb.ie and follow the links to ‘On-line
Reporting’ to complete a Human Medicines Adverse Reaction
Report
2. ‘Freepost system’ – Adverse Reaction Report Forms (yellow
cards) can be obtained directly from the Pharmacovigilance Unit of
the IMB or downloaded from the website under the ‘Publications
section’. A supply of yellow cards/Adverse Reaction Report Forms
may be requested by telephoning the Pharmacovigilance Unit of the
IMB at 01-676 4971
8/2/2009 396
Guidelines for Reporting Suspected Adverse Reactions
to Antiviral Medicines during Influenza Pandemic
“Pharmacovigilance”
Yellow card
Pharmacovigilance Section,
Irish Medicines Board, )
Kevin O'Malley House,
Earlsfort Centre,
Filled out by Public Health
Earlsfort Terrace,
Dublin 2,
Ireland.
Tel :353-1-676 4971
Fax: 353-1-634 3514
Email:
397
imbpharmacovigilance@imb.ie
8/2/2009
Pandemic Influenza A(H1N1) 09 Virus
Irelands National Antiviral Stockpile (INAS)
• Mobilization plans to be Irish Alert Level Description
tested for National Stock Pile Irish Alert Level 1 Cases only
outside Ireland (in
during this Pandemic a country or
Influenza A(H1N1) 09 Virus countries with or
outbreak if the Irish Alert without extensive
Irish travel/trade
Level Hits 2 links
• Surveillance and monitoring Irish Alert Level 2 New virus isolated
must be In place for future in Ireland
exercise improvements for Irish Alert Level 3 Outbreak(s) in
Ireland
mobilizations of Irelands
Irish Alert Level 4 Widespread
National Antiviral Stockpile activity in Ireland
Alert levels will increase in Phase 6
declaration by WHO
8/2/2009 398
Pandemic Influenza Expert Group
(PIEG) On Antivirals
Irelands National Antiviral Stockpile
• One million treatment packs of Oseltamivir (Tamiflu) are stockpiled
• This quantity is sufficient to treat 55 % of the population and is over international
trends
• 63kg of the API has also been purchased
– Active Pharmaceutical Ingredient (API), oseltamivir phosphate powder, should be purchased
to treat young children between the ages of one and five years
– Arrangements have been put in place so that API powder will be converted to paediatric
capsules, which will be used for all children aged one to 11 years of age
• 706,000 packs of zanamivir (Relenza) have now been ordered
• This is sufficient to cover 20% of the population over the age of seven
• 500,000 surgical masks, five million pairs of disposable gloves and 150,000 surgical
gowns for health care providers (national stock pile in Ireland exceeds EU
standards!)
8/2/2009 399
Pandemic Influenza A(H1N1) 09 Virus
WHO Country Antiviral Distribution Plan
6 May 2009
• WHO headquarters stocks distributed to –
–
Honduras
Indonesia
countries. Regional stock distribution is – Kenya
not included here so this is not the full list of –
–
Kiribati
Kyrgyzstan
countries receiving antivirals from WHO – Lao People's Democratic Republic
globally –
–
Lesotho
Liberia
– Afghanistan
– Madagascar
– Angola
– Malawi
– Armenia
– Mali
– Azerbaijan
– Mauritania
– Bangladesh
– Benin – Mexico
– Bhutan – Mongolia
– Bolivia – Mozambique
– Burkina Faso – Myanmar
– Burundi – Nepal
– Cambodia – Nicaragua
– Cameroon – Niger
– Central African Republic – Nigeria
WHO/Tom Moran
– Chad – Pakistan
– Comoros – Papua New Guinea WHO staff prepare boxes of
– Congo – Republic of Moldova antiviral drugs for countries
– Cote d´Ivoire – Rwanda
– Cuba – Sao Tome and Principe
May 8 2009
– Democratic People's Republic of Korea – Senegal
– Democratic Republic of the Congo – Sierra Leone
– Democratic Republic of Timor-Leste
– Solomon Islands
– Djibouti
– Somalia
– Eritrea
– Sri Lanka
– Ethiopia
– Sudan
– Gambia
– Georgia – Tajikistan
– Ghana – Togo
– Guinea – Uganda
– Guinea-Bissau – Ukraine
– Guyana – United Republic of Tanzania
– Haiti – Uzbekistan
– Viet Nam 400
8/2/2009 – Yemen
– Zambia
– Zimbabwe
Influenza Flu Clinics for Antivirals, Vaccination, and
Immunizations Process Flow Chart
Queue Medical Assessment (screeners)
Antivirals/ Require Antiviral
Triage Contraindication
Vaccination Med Consult
Home, hosp,
MD Antiviral/Vaccination Area
Medical
Orientation Post Antiviral/Vaccination Evaluation
and Education Education
EXIT
Form collection
Registration
401
8/2/2009
Performance Improvement
for Irelands Antiviral Tiers and Targets
• According to ECDC : An important general principle is that
having stockpiles is of limited use without the agreed
objectives, protocols, administration and delivery systems to
accompany them. Good resource!
Finding the balance
Delaying the Pandemic
Population Antiviral Stockpiling
(Clinical Attack Rate)
Interim guidance: Public
health use of influenza
antivirals during
influenza pandemics
8/2/2009 403
Guidance for Pharmacy Staff
Pandemic Influenza A(H1N1) 09 Virus
• Full Tamiflu info @
http://www.emea.europa.eu/humandocs/PDFs/EPAR/tamiflu/H-402-PI-en.pdf
8/2/2009 404
Pandemic Influenza A(H1N1) 09 Virus
Standard Precautions
• Health Protection Surveillance
Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
• See Website for download for
clinicians
8/2/2009 405
Pandemic Influenza A(H1N1) 09 Virus
Irish Universal Respiratory Hygiene
• Pandemic Influenza
Preparedness for Ireland:
Advice of the Pandemic
Influenza Expert Group
• The following are
components of a universal
respiratory hygiene
strategy to be adopted in
all health care facilities
• Read in Narration!
Breaking the Chain
of Infection
8/2/2009 406
Pandemic Influenza A(H1N1) 09 Virus
Transmission-Based Precautions
Transmission-Based Precautions Research
Contact Precautions Direct and indirect contact transmission
Contact precautions should be applied in addition to Standard Precautions to prevent transmission of Direct contact transmission involves skin-to-skin contact (such as hand-to-hand) between an infected
highly transmissible organisms that are transmitted from person to person via the contact route (e.g. person and a susceptible person.
Methicillin resistant Staphylococcus aureus) The proportion of influenza virus transmission caused by direct or indirect contact remains unknown;
however, transmission by these routes can occur.
Influenza viruses can live for 24 to 48 hours on nonporous environmental surfaces and less than 12 hours
on porous surfaces (see References: Bean 1982), indicating that transmission can occur when hands that
touch contaminated surfaces subsequently come into contact with oral, ocular, or nasal mucosa. Fomite
transmission appears to be rare.
Droplet Precautions Droplet transmission
Droplet Precautions should be applied, in addition to Standard Precautions, to prevent transmission of Influenza viruses are predominantly transmitted by large droplets (ie, >5 mcm).
highly transmissible organisms that are transmitted via respiratory secretions from one person to Droplets are expelled by coughing and sneezing and generally travel through the air no more than 3 feet
another (e.g. Influenza) from the infected person.
Transmission via large droplets requires close contact between the source and recipient persons,
permitting droplets, which do not remain suspended in the air, to come into direct contact with oral,
nasal, or ocular mucosa.
Special air handling and ventilation systems are not required to prevent droplet transmission.
Airborne Precautions Airborne transmission
Airborne Precautions should be applied, in addition to Standard Precautions, to prevent transmission of Airborne transmission of influenza viruses (ie, transmission via droplet nuclei [<5 mcm], which remain
highly transmissible organisms that are transmitted via the air from one person to another (e.g. suspended in the air and have the potential to travel farther than several feet) has been suggested in
Tuberculosis) several reports, although evidence to conclusively support airborne transmission of influenza virus is
limited (see References: Bridges 2003).
Available data suggest that airborne transmission does not play a major role in the spread of influenza
viruses (see References: Brankston 2007). However, airborne transmission of influenza viruses may
occur, at least over short distances (see References: Tellier 2006), and further study is needed to
determine the importance of this mode of transmission in healthcare or other settings.
Aerosol-generating Procedures(AGPs) Aerosol-generating Procedures (AGPs)
eg, intubation, bronchoscopy, nebulizer treatments) theoretically could promote dissemination of
droplet nuclei from infected patients, although this has not been studied for influenza.
There is no evidence to date that droplet nuclei containing influenza viruses can travel through
ventilation systems or across long distances, such as can occur with tuberculosis and certain other viral
agents.
8/2/2009 407
Pandemic Influenza A(H1N1) 09 Virus
YOUR 4 MOMENTS FOR HAND HYGIENE
1. Clean your hands when(Canadian) 2, Clean your hands
entering before touching the
patient or any object or immediately before any
furniture in the patient’s aseptic procedure.
environment. To protect the patient
To protect the patient/ patient against harmful organisms,
environment from harmful including the patient’s own
organisms carried on your organisms, entering his or
hands her body.
4. Clean your hands when
3. Clean your hands leaving after touching
immediately after an patient or any object or
exposure risk to body fluids furniture in the patient’s
(and after glove removal). environment.
To protect yourself and the To protect yourself and the
health care environment from health care environment
harmful patient organisms. from harmful patient
See WHO Hygiene Protocol organisms
witch has 5 Steps
Irish has 6 Steps
8/2/2009 408
The “My 5 Moments for Hand Hygiene”
Approach (WHO)
8/2/2009 409
Irelands Hygiene
“5 Step” Protocol
• Ireland
In 2006-9, Ireland organised a national campaign called ‘Clean Hands Save Lives’.
Hand Hygiene Opportunity Definition and examples
1. Before touching a patient This is defined as any opportunity prior to patient care or entering a patient bed space (inside curtains or into a single
room) to undertake any element of care such as;
shaking hands
clinical examination & taking clinical observations (temperature, pulse, blood pressure)
adjust equipment
resuming care if interrupted (e.g. called to phone)
Note
Avoid double counting – should a HCW immediately move from one patient to another having decontaminated their
hands this is classed “after patient care “opportunity and not a missed “before patient care opportunity”
2. After touching a patient This HHO is defined as any opportunity following any physical contact with a patient such as:
clinical examination or taking clinical observations (temperature, pulse, blood pressure)
shaking hands
assisting with food and drink
3. After body fluid exposure risk This HHO is defined as any opportunity following any procedure that may result in exposure to blood or body fluids
such as:
venepuncture, oral hygiene, after handling contaminated dressings
blood and body fluid spillages including emptying bedpans/urinals/commodes, urine bags
any contact with urinary catheters, tubing or urinary collection bag
suctioning or aspiration of any body fluids
after removing gloves
before moving from a contaminated body site to a clean body site during patient care
4. Before clean/aseptic procedure This HHO is defined as any opportunity prior to commencing a clean or aseptic procedure such as;
wound dressing
catheter insertion or prior to accessing a IV catheter
prior to preparation medications
5. After touching patient surroundings This HHO is defined as leaving the patient bed space (i.e. curtained areas or single room) after touching any item such as:
bed or bed linen
furniture (e.g. locker, chair, bed table, procedure/night light)
curtains
medical equipment (infusion pumps, drip stands, trolley etc)
case notes
before moving from a contaminated body site to a clean body site during patient care
8/2/2009 410
Hand Hygiene Compliance
for Ireland Overview
• A hand hygiene episode is defined as hand washing with soap and water or using an
alcohol gel/rub. Compliance is defined as the total observed hand hygiene episodes
divided by the HHO multiplied by 100 and expressed as a percentage.
Compliance = observed hand hygiene episodes x 100 = % compliance
hand hygiene opportunities (HHO)
• Acute healthcare facilities (HCF) are advised to undertake hand hygiene observational
audits biannually
• A local action plan to address compliance rates <75% should be put in place in each
HCF. This target (75%) should be viewed as the start of a process which will see it
increase year on year
• The overall aim of this process is to achieve 100% compliance
•
8/2/2009 411
Hand Hygiene Compliance
Observation Tools
• The advantages of direct • Disadvantages of direct
observation are: observation are:
Assessment of compliance Labour intensive and time
rates in different groups of consuming
HCWs Requirement for trained
Assessment of HCW behaviour observers
(e.g., when and where HCWs Influence of the “Hawthorne
are more likely to wash their effect” on results
hands) Objectivity of the observer
Assessment of hand hygiene Using results to compare
technique internally or externally when
the inter rater reliability has
not been assessed
8/2/2009 412
Hand Hygiene Compliance
In Acute Hospitals in Ireland
8/2/2009 413
Hand Hygiene Compliance
HPSC/HSE Resources “HCAI” for Ireland
• Further information from HSE on infection control and healthcare associated infection (HCAI) is
available at:
• Guidelines for hand hygiene in Irish healthcare settings are available at:
– http://www.ndsc.ie/hpsc/A-Z/Gastroenteric/Handwashing/Guidelines/
• A suite of tools and resources on hand hygiene are available from the WHO at:
– http://www.who.int/gpsc/5may/tools/en/index.html
• Further information on infection control and healthcare associated infection is available at:
– http://www.hpsc.ie/hpsc/A-Z/MicrobiologyAntimicrobialResistance/InfectionControlandHealthcare-
AssociatedInfection/
• Alcohol Hand Rub Consumption in Acute Irish Hospitals2006 to Q4 2008
– http://www.ndsc.ie/hpsc/A-Z/Gastroenteric/Handwashing/Guidelines/
• Hand Hygiene Observation Audit tool Standard Operating Procedure
– http://www.ndsc.ie/hpsc/A-Z/Gastroenteric/Handwashing/AuditTools/File,3789,en.pdf
– Hand hygiene observational audit tool 2009 (Excel template)
– Hand hygiene compliance - Epi Insight, Volume 10, Issue 7, July 2009
• External Links
• Hand Hygiene in Healthcare Settings, CDC, US
• Hand Hygiene Resource Center
• HandHygiene.co.uk
“You can hyperlink during slide show to
view and download files!”
8/2/2009 414
Performance Improvement
Pandemic Planning “Hand Washing”
• Author promotes this hand wash technique with incorporating
times/wash
• 20-30 seconds for non-soiled hands
• 60 seconds for visibly soiled hands
8/2/2009 415
Pandemic Influenza A(H1N1) 09 Virus
Protocol for Surveillance of Influenza-like Illness in
Healthcare Workers during Pandemic Influenza
Containment Phase 7.0 Mitigation Phase 9.0
•
http://www.hpsc.ie/hpsc/A-
http://www.hpsc.ie/hpsc/A- Z/EmergencyPlanning/AvianPandemicInfluenza/S
Z/EmergencyPlanning/AvianPandemicInflu wineInfluenza/AdviceforHealthProfessionals/Hos
enza/SwineInfluenza/AdviceforHealthProfe pitalClinicians/File,3638,en.pdf
8/2/2009 ssionals/HospitalClinicians/ 416
Pandemic Influenza A(H1N1) 09 Virus
“Protocol for Surveillance of Influenza-like Illness in Healthcare Workers
during Pandemic Influenza A(H1N1)v “Mitigation Phase”
Mitigation Phase 9.0
• Health Protection Surveillance Centre
25-27 Middle Gardiner St
Dublin 1, Ireland.
t: +353 1 8765300
f: +353 1 8561299
e: hpsc@hse.ie
See Website for download for clinicians or this
hyperlink http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/S
wineInfluenza/AdviceforHealthProfessionals/Hos
pitalClinicians/File,3638,en.pdf
8/2/2009 417
Pandemic Influenza A(H1N1) 09 Virus
Surveillance of Healthcare Workers
• Healthcare worker (HCW) • Porters
includes: • Domestic staff
• Hospital clinician teams • Receptionists
• General practitioners • Administration staff
• Nurses • Ambulance staff
• Laboratory scientists • Mortuary workers
• Physiotherapists and other
allied health professional
• Healthcare students
• Health volunteers and
community health workers
Safety, Health
and Welfare at
Work Act 2005
8/2/2009 418
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus
• Unusual clusters or syndromes
• If there are unusual clusters of
disease or syndromes among
HCWs
– The DPH/MOH will immediately
inform HPSC of any unusual
clusters of disease or syndromes
among Healthcare workers July ,16 , 2009 update
“WHO” Definition of a healthcare cluster:
A cluster is defined as two or more healthcare workers in the same healthcare
facility/unit with unexplained acute respiratory illness and with fever ≥38°C, or
with severe lower respiratory tract infection or pneumonia, and with onset of
illness within a period of 14 days of each other.
8/2/2009 419
Pandemic Influenza A(H1N1) 09 Virus
Surveillance of Healthcare Workers
Clinical criteria
• Acute onset of fever (temperature > 38 °C or history of
fever and two or more of the following:
• Cough Containment Phase Mitigation Phase Mitigation Treatment Phase
• Sore throat
• Myalgia
• Headache
• Rhinorrhea
• Vomiting/Diarrhoea
HPSC June ,26, 2009 HPSC July ,16, 2009 HPSC July ,29, 2009
• Pneumonia
• Influenza-like Illness (ILI)
• Acute Febrile respiratory illness (AFRI)
• Severs respiratory illness with suspected/probable
pneumonia (SRI)
8/2/2009 420
Comparison of Community and
Healthcare Cluster Definitions
Definition Community Surveillance Definition of a healthcare cluster
of Clusters/Outbreaks (World Health Organization)
• Influenza-like illness (ILI) - • A cluster is defined as two or
definition for interim surveillance more healthcare workers in the
of clusters/outbreaks
same healthcare facility/unit with
• Three or more cases of ILI arising
within the same 72 hour period unexplained acute respiratory
which meet the same clinical case illness and with fever ≥38°C, or
definition and where an with severe lower respiratory
epidemiological link can be tract infection or pneumonia, and
established
with onset of illness within a
• ILI symptoms include:
– Acute onset of fever (temperature period of 14 days of each other
≥38°C)
– OR history of fever
– AND flu-like illness (two or more of
the following symptoms: cough,
sore throat, myalgia, headache,
rhinorrhea or vomiting/diarrhoea)
8/2/2009 421
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus
• Report to occupational health department
• The relevant line manager should notify the occupational health department:
• If there is an apparent increase in absenteeism rates among a particular group of HCWs
or in a particular area
• If there is an apparent cluster of acute respiratory illness among a particular group of
HCWs or in a particular area
• If a HCW becomes ill with a severe lower respiratory tract infection or pneumonia
• In institutions where there is no Occupational Health Physician, the General Manager
will consult with the Chair of the Medical Executive to assign this role to a suitable
doctor. See also Supplement 10, Guidance for Pandemic Influenza: Infection Control in
Hospitals, Community and Primary Care Settings available at:
• http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/Guidance/PandemicInfluenzaPrepared
nessforIreland/
8/2/2009 422
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus
• Single cases (Containment Phase)
• If a HCW is admitted to hospital with respiratory
symptoms of ILI (Influenza-like-Illness), AFRI (acute
febrile respiratory illness) or severe lower respiratory
illness/pneumonia and they have at least one of the
following in the seven days before disease onset:
– Been a close contact of a confirmed case of Pandemic
Influenza A(H1N1) 09 Virus infection while the case was ill
– Have travelled to an area where sustained human-to-
human transmission of Pandemic Influenza A(H1N1) 09
Virus is documented
– Worked in a laboratory
– Are within the defined risk groups that includes pregnant
women, people on medication for asthma, and bariatric
(obese) individuals with a BMI ≥40 Update June 11 2009
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianP
andemicInfluenza/SwineInflu
enza/AdviceforHealthProfessi
onals/GPs/File,3724,en.pdf
8/2/2009 423
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus
Occupational Health Role
• Containment Phase continues
• If a HCW has been involved in caring for or examining a
symptomatic patient with Pandemic Influenza A(H1N1) 09
Virus infection the following actions should be taken:
• 1.Inform the regional DPH/MOH if the HCW provided
direct clinical or personal care or examined the
symptomatic patient without appropriate Personal
Protective Equipment (PPE). Discuss contact management
with DPH/MOH
• 2.For HCWs who are defined in the high risk category or
and did not wear PPE* while caring for symptomatic
patient:
– Institute post-exposure prophylaxis with oseltamivir (Tamiflu)
as soon as possible unless more than 7 days have elapsed
since the last exposure. The dose of oseltamivir is 75mg daily
for 10 days following last exposure
• 3.Provide all HCW contacts with clear public health
recommendations and information on Pandemic Influenza
A(H1N1) 09 Virus (available at www.hpsc.ie/hpsc/)
8/2/2009 424
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus
Occupational Health Role
• Containment Phase continues
• 4. Request that any febrile respiratory or other
unexplained illness within 7 days of last contact be
reported
• 5. If the HCW contact becomes unwell they should be
investigated and treated by there GP and occupational
health (liaise with DPH/MOH)
• They should also be advised to discontinue work
immediately and upon return be medically cleared
• 6. Advise all contacts to strictly adhere to all infection
control and prevention precautions as follows:
– Avoid touching their faces, including their eyes and nose and
mouth with their hands
– Wash hands frequently. This means washing with soap and
running water for a minimum of 15-30 seconds or the use of an
alcohol-based hand sanitiser (minimum 60% alcohol) if the
hands are not visibly soiled
– If visible soiled use WHO guidance for visible soiled hand wash
technique (60 seconds/hand wash)
– Cover their mouth with a tissue when they cough and/sneeze,
and dispose carefully in a bin afterwards
8/2/2009 425
Pandemic Influenza A(H1N1) 09 Virus
Occupational Health Role
• The previous occupational health
mitigation slides were cited from the
“Protocol for Surveillance of Influenza-
like Illness in Healthcare Workers during
Pandemic Influenza A(H1N1)v
Mitigation Phase” by HPSC ver. 9.0
• Available for download at HPSC
• http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInflue
nza/AdviceforHealthProfessionals/OccupationalHealthProfes
sionals/File,3638,en.pdf
8/2/2009 426
Pandemic Influenza A(H1N1) 09 Virus
Infection Control In Health Care Setting
• For visible soiled hands WHO recommends the
following technique
8/2/2009 427
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Occupational Health Role Update July,
16, 2009
• “Close contacts in the health care setting are defined as: health or social care
workers who provided direct clinical or personal care or who examined a
symptomatic patient (including taking nasal and throat swabs for viral testing)
without wearing appropriate personal protective equipment (PPE) for Standard,
Droplet and Contact Precautions:
– Routine care (including taking nasal and throat viral swabs): surgical mask, gloves, plastic apron (and
goggles if risk of splashing or spraying)
– Aerosol generating procedures: FFP2 or FFP3 masks, goggles, long-sleeved gown and gloves.
– Failure to implement hand hygiene following contact with contaminated surfaces or after removing
PPE is also considered to pose risk of infection.
– Casual contact with the ill person for example, passing them in the corridor at work or waving to
them etc. does not mean you are a contact and does not require any further action.
• The following groups of healthcare workers caring for patients with
probable/confirmed Pandemic Influenza A(H1N1) 09 Virus ) will require a risk
assessment and consideration of chemoprophylaxis:
– Healthcare workers who have not worn appropriate PPE
– Healthcare workers who have worn PPE without formal fit testing
– Healthcare workers who have worn surgical masks but who have been unwittingly exposed to
patient generated aerosols”
8/2/2009 Cited from HPSC 428
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Surveillance
• The Occupational Health team (or as per local
arrangements) will inform Public Health about
details of contacts
• A Public Health Doctor will contact you to ask you
a number of questions about your health and the
amount / type of contact which you had with the
sick person, and will advise on what precautions
you need to take
• In hospitals, where there is an Occupational
Health Department, this will be carried out by
Occupational Health staff
8/2/2009 429
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Surveillance
• Health or social care workers
who provided direct
clinical/personal care or who
or who examined a
symptomatic patient without
wearing appropriate PPE**
– Those who were wearing
appropriate PPE should self
monitor for one week and
report symptoms as explained
in Public Health Management
of Contacts PEP Phase 6 Update
June, 22, 2009
8/2/2009 430
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Surveillance
• Containment and Mitigation Phase:
• All healthcare workers at this time should be self monitoring for flu-like symptoms
and should report the development of same to their line manager promptly
• HCW contacts of suspected or Pandemic Influenza A(H1N1) 09 Virus should check
their temperature twice a day and look out for flu-like symptoms for a period of 7
days:
• Acute sudden onset of fever developing in <6 hours (temperature ≥38C) or history
of fever
• and two or more of the following:
– cough, sore throat, myalgia, headache, rhiorrhoea or diarrhoea, vomiting
– OR
– Pneumonia or other severe respiratory illness
• Please report the development of any flu like symptoms to public health staff and
to your line manager promptly
• You will also be asked to contact Occupational Health and referred to your GP or
emergency department physician
8/2/2009 431
Healthcare Workers “Fitness for Work”
Occupational Health Role
• Containment and Mitigation Phase:
• Fitness for Work
• Occupational health advice on fitness for work (or on the need for work restrictions
at a given time) should be sought by:
• Healthcare workers who develop symptoms of ILI (Influenza Like Illness), who
should report to their line manager in the first instance
• Healthcare workers recovering from ILI
• Healthcare workers who have been in unprotected contact with suspect or
confirmed cases of ILI (either in the community or at work)
• Healthcare workers who have been prescribed antiviral therapy by their GP or a
Public Health Doctor
• Healthcare workers who have pre-existing medical conditions which might increase
their risk of severe influenza complications
• Pregnant healthcare workers
• Healthcare workers who cannot achieve an adequate ‘seal’ with the PPE provided
by their employer
8/2/2009 432
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Occupational Health Role
• Mitigation Phase:
• Occupational Health Role
• If a HCW has been involved in caring for or
examining a symptomatic patient with probable or
confirmed influenza A(H1N1)v infection the
following actions should be taken:
• Provide all HCW contacts with clear public health
recommendations and information on influenza
A(H1N1)v (available at www.hpsc.ie/hpsc/).
• Request that any febrile respiratory or other
unexplained illness within 7 days of last contact be
reported.
• If the HCW contact becomes unwell they should
contact their GP and Occupational Health as soon Interim algorithm for the PRIMARY CARE Management
of Persons who may have Influenza A(H1N1)v
as possible and go off duty until medically
assessed.
8/2/2009 433
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Occupational Health Role
• Mitigation Phase:
• Single cases and unusual clusters or syndromes should
be notified as follows:
• If a HCW is admitted to hospital with respiratory
symptoms suggestive of influenza A(H1N1)v, the staff
member’s GP and Occupational Health should be
notified immediately.
• If there are unusual clusters of disease or syndromes
among HCWs, the Occupational Health Department
and DPH should be informed as soon as possible.
• The DPH/MOH will immediately inform HPSC of any
unusual clusters of disease or syndromes among
HCWs.
8/2/2009 434
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Occupational Health Role
• Mitigation Phase:
• Report to Occupational Health Department
• The relevant line manager for healthcare staff should notify the
Occupational Health Physician and Occupational Health Nurse Advisors
or the doctor assigned to this function in healthcare facilities with no
Occupational Health staff:
• If there is an apparent increase in absenteeism rates among a particular
group of HCWs or in a particular area of the healthcare facility
• If there is an apparent cluster of acute respiratory illness among a
particular group of HCWs or in a particular area of the healthcare facility
• If a HCW becomes ill with a severe lower respiratory tract infection or
pneumonia.
• In the case of medical staff, it is recommended that all Clinical
Consultants notify Occupational Health of any ILI or respiratory illness in
medical members of their clinical teams.
8/2/2009 435
Healthcare Workers with Probable
Pandemic Influenza A(H1N1) 09 Virus Occupational Health Role
• Mitigation Phase:
• Education of healthcare workers
• The hospital influenza pandemic committee should arrange for all
HCWs to receive education on:
• The signs and symptoms of influenza A(H1N1)v
• Whom to notify i.e. line manager if they suspect they may be
suffering from any of the relevant symptoms or clinical conditions
• Infection prevention and control precautions to adhere to, such as:
– Avoid touching their faces, including their eyes and nose and mouth
with their hands
– Wash hands frequently. This means washing with soap and running
water for a minimum of 15-20 seconds or the use of an alcohol-based
hand sanitiser (minimum 60% alcohol) if the hands are not visibly soiled
– Cover their mouth with a tissue when they cough and/sneeze, and
dispose carefully in a bin afterwards
8/2/2009 436
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInflu
enza/AdviceforHealthProfessionals/InfectionControl/File,36
28,en.pdf
8/2/2009 437
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
• Standard Precautions require all HCWs to:
• Standard Precautions must be applied by all HCWs to the care of all
patients/clients in all healthcare settings regardless of the suspected or
confirmed presence of an infectious agent.
– Occupational health programme
– Appropriate patient placement
– Hand hygiene
– Patient movement and transfer
– Respiratory hygiene and cough etiquette
– Use of personal protective equipment (PPE)
– Decontamination of the environment
– Decontamination of reusable medical equipment
– Management of linen and laundry
– Management of needle stick injuries
– Management of waste
– Management of spillages of blood and body fluids
– Safe injection practices
– Management of sharps
8/2/2009 438
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.2 Occupational Health Programme Standard Precautions HCWs should self monitor their own health for influenza like symptoms
HCWs with symptoms should not attend work and should immediately report symptoms to their line manager
All healthcare facilities should have a surveillance programme in place to monitor staff and patients for ILI. Clusters of
outbreaks should be reported to the local Public Health Department. See
“Protocol for Surveillance of Influenza-like Illness in Healthcare Workers during Pandemic Influenza A(H1N1)v Mitigation
Phase” at www.hpsc.ie
2.3 Patient Placement Standard Precautions Home
Assess the patient with suspected or confirmed influenza A(H1N1) by phone at home if possible
GP/Primary care/Community
Droplet Precautions
Place in a single room and avoid communal areas if possible. Otherwise do not place within approximately 1 metre of
other patients
Contact Precautions
Hospital
Place patient with suspected or confirmed influenza A(H1N1) in a single room preferably with ante room and en-suite
facilities
Emergency departments without single rooms must have interim arrangements in place to prioritise transfer to an
appropriate single room
Avoid communal areas and placing patient within approximately 1 metre of other patients
Ambulance
Refer to ambulance advice document
2.4 Hand Hygiene Standard Precautions Hand hygiene using liquid soap or alcohol hand gel/rub must be performed before and after all patient
care procedures
2.5 Patient Movement and Transfer Standard Precautions External transfer
Patient should wear a surgical mask outside their room
It is the responsibility of the transferring facility to inform staff of the precautions required
Droplet Precautions
Refer to ambulance advice document
Contact Precautions Internal transfer
Minimise movement of patient from single room
Patient should wear a surgical mask outside their room
Staff should be informed of the precautions required in the receiving departments (e.g. diagnostic departments)
Avoid holding patients in communal areas (radiology etc)
HCW PPE: Wear a surgical mask and observe hand hygiene
8/2/2009 439
Pandemic (H1N1) 2009 Virus
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.6 Respiratory Hygiene & Standard Precautions As per Standard Precautions patients presenting with signs and symptoms of undiagnosed respiratory
Cough Etiquette infections should be
Identified promptly in primary care and emergency departments
Offered masks (and other symptomatic persons e.g., persons who accompany ill patients should also
be offered masks)
Encouraged to maintain spatial separation, ideally a distance of approximately 1 meter, from others
in common waiting areas
Emergency departments and primary care facilities should:
Ensure that supplies of tissues, foot operating waste bins and hand hygiene facilities are available in
all departments including waiting areas throughout the facility
Educate patients/visitors/carers on Respiratory Etiquette and Cough Hygiene using some or all of the
following:
Patient information leaflets
Posters in all departments especially waiting areas
Droplet Precautions If influenza A(H1N1) is suspected place patient & persons who accompany ill patients in a single
room
See Appendix A for respiratory hygiene and cough etiquette poster. The poster can be downloaded
from the following website
•http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdvicefortheGeneralPublic
/RespiratoryHygiene/
8/2/2009 440
Pandemic (H1N1) 2009
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed Pandemic (H1N1) 2009 Virus
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.7 Personal Standard Precautions The following applies to all settings:
Protective Droplet Precautions GP/Primary care/Ambulance transfer/Hospital
Equipment Contact Precautions Patient should wear:
(PPE) A surgical mask when outside their single room
HCWs must wear the following for:
1. Routine care
Surgical mask, Plastic Apron/Gown, Gloves (& Goggles if
splashing/spraying risk)
2. Aerosol Generating Procedures
FFP2 or FFP3 mask (correctly fitted), Goggles, Long sleeved disposable
gown, Gloves
Refer to Aerosol Generating Procedures document and to PPE poster
Masks
Change mask if it becomes damp, wet or torn
Change and discard mask when leaving the room or patient care area
HCW’s when putting on and removing PPE must :
Put on and remove in the correct sequence (refer to PPE poster)
Remove gloves & apron/gown inside the single room
Remove mask in the ante room or immediately outside the single room
if there is no ante room. Ensure door is closed.
Decontaminate hands immediately after removing PPE
8/2/2009 441
Swine influenza A (H1N1)
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed swine influenza A (H1N1)
Key Components PRECAUTIONS Key Elements of Clinical Practices and Measures
2.8 Environmental Decontamination Standard Precautions In addition to Standard Precautions:
Only take essential equipment and supplies into the room.
Droplet Precautions Do not stockpile as unused stock will have to be discarded on cessation of additional precautions
Patient charts/records should not be taken into the single room
Contact Precautions The frequency and intensity of cleaning may need to be increased based on the patients level of hygiene and the level of
environmental contamination
HCW’s must wear surgical mask, gloves, apron for cleaning the patients room
Thoroughly clean the environment and furniture and all patient care equipment daily with a neutral detergent and
disinfectant (hypochlorite solution 1000 ppm) paying special attention to frequently touched sites and equipment close to
the patient
On patient discharge/transfer cleaning and disinfection of the environment
Prior to initiating environmental cleaning and disinfection, all privacy, shower and window curtains must be
removed and sent for laundering
All disposable items including paper towels and toilet paper should be discarded
All sterile and non-sterile supplies in the patient room to be discarded on patient transfer/discharge
Dishes and Eating Utensils Treatment rooms (e.g., x-ray etc)
Clean and disinfect the environment and furniture after use with a neutral detergent and disinfectant
(hypochlorite solution 1000 ppm) paying special attention to frequently touched sites (door handles, bed rails
etc)
Medical equipment (refer to 2.9)
Cutlery and crockery - No additional measures are required for cutlery and crockery washed in a dishwasher or wash with
liquid detergent and water
2.9 Patient Care Equipment & Standard Precautions In addition to Standard Precautions:
Decontamination of Medical Devices Dedicate patient care medical devices (e.g., thermometers, sphygmomanometers, stethoscopes, glucometers) to single
Droplet Precautions patient use
Use disposable equipment whenever possible
Contact Precautions Manufacturer’s instructions should be followed for cleaning and disinfecting of reusable medical equipment after use
Single use items should be disposed of after use
Bedpan/Commodes
Use a working washer disinfector at 80°C for one minute
Dedicate a commode to single patient use if no en suite available
Decontaminate commode surface after each patient use with a hypochlorite solution 1000 ppm
8/2/2009 442
Swine influenza A (H1N1)
Infection Prevention and Control Precautions for use when caring for patients
with suspected or confirmed swine influenza A (H1N1)
Key Components STANDARD Key Elements of Clinical Practices and Measures
PRECAUTIONS
2.10 Linen/Laundry Standard Precautions No additional precautions necessary
As per Standard Precautions all contaminated laundry should be carefully placed in an alginate stitched or water
soluble bag and then placed into a laundry bag clearly identified with labels, colour-coding or other methods prior to
transport to an approved laundry capable of dealing with contaminated linen
2.11 Management of needle stick injuries (NSI) and Standard Precautions No additional precautions necessary
blood and body fluid exposure
2.12 Management Standard Precautions No additional precautions necessary for Non Healthcare Risk and Healthcare Risk Waste
of Waste Dispose of all PPE as Healthcare Risk Waste (e.g. used masks)
2.13 Management spillages of blood and body fluids Standard Precautions No additional precautions necessary
2.14 Safe Injection Practices Standard Precautions No additional precautions necessary
2.15 Management of sharps Standard Precautions No additional precautions necessary
8/2/2009 443
Pandemic Influenza A(H1N1) 09 Virus
HealthCare Environmental Waste
• In aerosol generating activities (e.g., collection of clinical
specimens, endotracheal intubation, nebulizer
treatment, bronchoscopy, and resuscitation involving
emergency intubation or cardiac pulmonary
resuscitation) SOP must be in place
• Appropriate disinfectants
– 70% Ethanol
– 5% Lysol
– 10% Bleach http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicInfluenz
a/SwineInfluenza/AdviceforHealthProfessiona
ls/InfectionControl/File,3625,en.pdf
• According to PIEG: Commonly used surfaces such as door
handles, handrails, table surfaces etc. should be cleaned
first and then disinfected with a chlorine releasing
disinfectant (1000 ppm) twice daily.
8/2/2009 444
Aerosol Generating Procedures (AGP)
According to WHO
• Aerosol generating procedures: • Nebulisation
• Intubation and related • Non-invasive positive
procedures, e.g. manual pressure ventilation
ventilation • Bi-level positive airway
• Respiratory and airway suctioning pressure (BiPAP) ,CPAP,NIV
(including tracheostomy care) • High frequency oscillating
• Nasopharyngeal aspiration ventilation
• Cardiopulmonary resuscitation
• Bronchoscopy
• Nasopharyngeal aspirate
• Transtracheal aspirate
• Broncheo-alveolar lavage
• Biopsy of lung or tracheal tissues
• Autopsy procedures
– i.e.. (Oscillating saws) Documented transmission
Non- documented transmission
8/2/2009 445
Recommended Initial PPE
Protection Levels
AGENT CATEGORY MINIMUM LEVEL OF PROTECTION
UNKNOWN LEVEL A
NERVE LEVEL A(1)
BLISTER LEVEL A(2)
BLOOD LEVEL B(3)
CHOKING LEVEL B(3)
BIOLOGICAL High Efficiency Particulate Air FILTER w/LEVEL C
RADIOLOGICAL High Efficiency Particulate Air FILTER w/LEVEL C
(1) High concentrations may result in nerve agent
poisoning
(2) Sufficient vapor will cause blisters
(3) Level A may be required in an enclosed area
8/2/2009 446
Pandemic Influenza A(H1N1) 09 Virus
Personal Protective Equipment PPE
• PPE = Personal Protective Equipment
• PPP = Personal Protective Practices
• PPE + PPP = Prevention
Personal Protection is not just “personal”:
It is also about preventing spread of disease
to others!
8/2/2009 447
Pandemic Influenza A(H1N1) 09 Virus
Personal Protective Equipment PPE
• Avian flu indicated that using a face mask with a
rating of N99, N100 or P100 in the United States
• A rating of FFP3 in Europe should be effective in
protecting against transmission
– 99% efficiency FFP3
Respirator Mask
• N95 or FFP2 face masks provide about 94%
efficiency
– 94% efficiency Particle
Recent work by Viscusi5 suggests that most N95
Respirator N95
(FFP2) respirators stored in warehouse and
laboratory conditions are likely to maintain there
filtration capacity for up to 10 years
8/2/2009 448
HPA-Recommendations For Extending
The Lifespan Of Masks:
• Use out-of-date facemasks and respirators to the extent available
• Use lower grade respirators to the extent available (where a respirator is indicated)
• Out-of-date but in-grade respirators are preferred to incorrect grade but in-date
stock
• Layered facemasks might be considered as a last resort when no respirators (of any
grade) are available for the performance of aerosol generating procedures
however this will impact on the supply of facemasks for other uses
• Re-use of any device is not recommended except as absolute last resort
• Decontamination of facemasks is not recommended
• Experimental work suggests that high efficacy respirators can be decontaminated
without degradation using certain regimens, but these are unlikely to prove
practical and there are insufficient data to be certain of a reliable effect. This
should only be considered if practical and then as a measure of last resort
• Hospitals can perform individual risk assessments to minimise all but essential
non-pandemic use of facemasks and determine whether alternatives measures
could be adopted
• Masking patients with a facemask as an alternative to masking HCWs might be a
more efficient use of limited quantities of masks in certain circumstances
• Any other nose/mouth covering could be considered once facemask are
exhausted, but there are no data in support of specific items other than the DIY
8/2/2009 449
cotton mask described by Dato et al
Pandemic Influenza A(H1N1) 09 Virus
Personal Protective Equipment PPE
• Disposable particulate respirators (e.g. NIOSH N95 or
European EN149: 2001
• FFP2; NIOSH N99 or European EN149: 2001 FFP3; or NIOSH
N100)
• Must have Fit Testing Program
FFP2 9300 valved disposable
respirator
FFP3 valved moulded cup mask
8/2/2009 450
Pandemic Influenza A(H1N1) 09 Virus
Respiratory Protection Programme
• A respiratory protection programme for staff
advised to wear respirators should be provided
by each healthcare facility to ensure compliance
with the following health and safety legislation
and standards:
Safety, Health and Welfare at Work Act, 2005
Safety, Health and Welfare at Work (General
Application) Regulations 2007 (S.I. No. 299 of
2007). Chapter 3 of Part 2: Personal Protective
Equipment
Safety, Health and Welfare at Work (Biological
Agents) Regulations 1994 (S.I. No. 146 of 1994)
(as amended by S.I. 248 of 1998).
IS EN 529:2005 (Irish Standard on Respiratory
Protective Devices)
8/2/2009 452
Pandemic Influenza A(H1N1) 09 Virus
Respiratory Protection Programme
• Governance:
• Identify department responsible to deliver the
respiratory protection programme
• Identify personnel responsible for the
implementation of the respiratory protection
programme
• Allocation of resources to deliver the
programme
• Selection, purchase and supply of suitable
masks to each healthcare facility
• Storage and maintenance of equipment
• Disposal of used equipment
• Record keeping
8/2/2009 453
Pandemic Influenza A(H1N1) 09 Virus
Respiratory Protection Programme
• Theoretical information, training and instruction including:
• Types of risk
• Knowledge and understanding of respiratory equipment including
limitations
• Personal factors including medical conditions, improper fitting
• Fit testing and fit checking
• Practical training including:
• An initial fit test using qualitative/ quantitative methods
• Ongoing fit check to confirm the seal each time the mask is donned
• Donning, removing and disposing of mask
8/2/2009 454
Pandemic Influenza A(H1N1) 09 Virus
Respiratory Protection Programme
• Persons with excessive facial hair, the
following options may be considered:
• HCW agrees to remove the beard / facial hair
• HCW agrees to be otherwise deployed
• Pre-exposure prophylaxis (with antiviral
medication) be considered
• Use of powered air respirator be considered
• If none of these options is deemed Types of respirators that can be fit tested
with this method include:
appropriate or possible (and only in • Filtering facepieces FFP1, FFP2,
FFP3;
exceptional circumstances) a bearded HCW • Half facemask respirators fitted with
a particulate or combined filter
may proceed in the clinical care of such
patients, only having been fully informed of
the risks and in the knowledge that an FFP2 or
FFP3 respirator cannot ensure adequate
protection
8/2/2009 455
Pandemic Influenza A(H1N1) 09 Virus
Personal Protective Equipment (PPE)
• Pandemic Influenza
A(H1N1) 09 Virus:
• Infection Prevention and
Control Precautions for
use when caring for
patients with suspected
or confirmed Pandemic
Influenza A(H1N1) 09
Virus
8/2/2009 456
How To Perform a Particulate
Respirator Seal Check
8/2/2009 457
Donning and Doffing
Personal Protective Equipment (PPE)
Donning PPE Doffing PPE
8/2/2009 458
Pandemic Influenza A(H1N1) 09 Virus
First Responders (PRAs)
Personal Protective Equipment (PPE):
• Interim recommendations:
• When treating a patient with a suspected case of Pandemic Influenza
A(H1N1) 09 Virus as defined above, the following PPE should be worn:
– Fit-tested disposable FF3 respirator and eye protection (e.g., goggles; eye
shield), disposable non-sterile gloves, and gown, when coming into close
contact with the patient.
• When treating a patient that is not a suspected case of swine-origin
influenza but who has symptoms of acute febrile respiratory illness, the
following precautions should be taken:
– Place a standard surgical mask on the patient, if tolerated. If not tolerated,
EMS personnel may wear a standard surgical mask.
– Use good respiratory hygiene – use non-sterile gloves for contact with
patient, patient secretions, or surfaces that may have been contaminated.
Follow hand hygiene including hand washing or cleansing with alcohol
based hand disinfectant after contact.
• Encourage good patient compartment vehicle airflow/ ventilation to
reduce the concentration of aerosol accumulation when possible
8/2/2009 459
Secondary Responders
Health Professionals (PPE)
• Pending clarification of
transmission patterns for this
virus, personnel providing
direct patient care for
suspected or Pandemic
Influenza A(H1N1) 09 Virus
cases should wear a fit-tested FFP2 9300 valved disposable
disposable FFP2-3 respirator respirator
mask
• Fit-tested disposable FF3
respirator and eye protection
(e.g., goggles; eye shield),
disposable non-sterile gloves,
and gown, when coming into
close contact with the swine
influenza
8/2/2009
FFP3 valved moulded cup mask
460
Tertiary Responders
Mortuary (PPE)
• However, for people who must
directly handle remains, such as
recovery personnel, or persons
identifying remains or preparing
the remains for burial or
cremation, there can be a risk
of exposure to Pandemic
Influenza A(H1N1) 09 Virus
• Fit-tested disposable FF3 respirator
and eye protection (e.g., goggles;
eye shield), disposable non-sterile
gloves, and gown, when coming into
close contact with the fatalities
• Increase level of protection if
needed!
8/2/2009 461
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains (HHR)
• Potentially contaminated human remains must be
segregated from the general population of a hospital
or other facility as soon as the risk is recognized
• Only those wearing the appropriate level of PPE should
perform segregation of contaminated human remains
• Segregation involves:
• Placing the human remains along with all personal
effects and clothing into an impermeable body bag
(double bagged if possible)
• Attaching available identifying information to the body
and bag
• Decontaminating the outside of the body bag (HAZMAT
teams may assist with determining the most
appropriate agent to use), using extreme care to avoid
tearing the body bag during handling,
• Moving the bagged human remains to a secure holding
area
• Notifying the medical examiner of the circumstances of
the death, and releasing the human remains to
personnel designated by the medical examiner
8/2/2009 462
Pandemic Influenza A(H1N1) 09 Virus Handling
Human Remains
Health Care setting
• Pandemic Influenza A(H1N1) 09 Virus handling
of Human Remains
Civil Registration Act 2004.
Pt.5
Provision of
particulars, and
registration, of
deaths.
8/2/2009 463
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains (HHR)
• Family Contact with the Deceased in Health Care
Settings
• For deceased persons with confirmed, probable,
or suspect Pandemic Influenza A(H1N1) 09 Virus
consider limiting contact with the body in health
care settings to close family members
• Direct contact with the body is discouraged;
however, necessary contact may occur as long as
hands are washed immediately with soap and
water
8/2/2009 464
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains
• Transport of Deceased Persons with Pandemic Influenza A(H1N1)
09 Virus
• Transport of deceased persons does not require any additional
precautions when bodies have been secured in a transport bag
• Hand hygiene should be performed after completing transport
• Standard precautions should be used when handling deceased
individuals, and preparing bodies for autopsy or transfer to
mortuary services
• Standard Precautions apply, and appropriate use of personal
protective equipment (PPE) (e.g., gowns, gloves, masks, and/or eye
protection) is recommended
• After PPE is removed, hand hygiene should be performed
8/2/2009 465
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains
Medical Examiner
• Pandemic Influenza A(H1N1) 09 Virus handling
of Human Remains
8/2/2009 466
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains Medical Examiner
• Personal protective equipment (PPE)
• Standard autopsy PPE, which includes:
– Scrub suit worn under an impervious gown or apron
– Goggles, face shield
– Double surgical gloves with an interposed layer of cut-proof synthetic mesh
gloves
– Surgical mask or respirator
– Shoe covers
• Aerosols generated procedure: use of oscillating saws
– FPP 2-3 disposable particulate respirators
– Powered Air Purifying Respirator (PAPR)
• Autopsy personnel who cannot wear a disposable particulate respirator
because of facial hair or other fit limitations should wear a loose-fitting
(e.g. helmeted or hooded) PAPR
• Remove PPE before leaving the autopsy suite and dispose in accordance
with facility policies and procedures
8/2/2009 467
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains Medical Examiner:
Environmental Precautions for Autopsies
• Autopsies on human remains infected Pandemic Influenza
A(H1N1) 09 Virus in autopsy settings that have adequate air-
handling system
• Airborne infection isolation rooms (AIIRs):
• Minimum of six (old construction) to twelve (new
construction) air changes per hour (and direct exhaust of air
to the outside or passed through a HEPA filter if air is
recirculated
• For autopsies, local airflow control (e.g., laminar flow systems)
can be used to direct aerosols away from personnel; however,
this safety feature does not eliminate the need for
appropriate PPE
• Use biosafety cabinets for the handling and examination of
smaller specimens
• Use vacuum shrouds for oscillating saws to contain aerosols
and reduce the volume released into the ambient air
environment
8/2/2009 468
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains
Funeral Service
• Pandemic Influenza A(H1N1) 09 Virus handling
of Human Remains
8/2/2009 469
Pandemic Influenza A(H1N1) 09 Virus
Handling Human Remains Funeral Service
• Pandemic Influenza A(H1N1) 09 Virus) ; Cat B for HHR
• There should be minimal contact/handling of the body
• When there is a need to do so, the following precautions are recommended:
– When handling dead bodies, do not smoke, eat or drink and avoid contact with their own
mouth, eyes or nose with their hands
– Avoid direct contact with blood or body fluids from the dead body
– Make sure that any cuts, wounds or abrasions are covered with waterproof bandages or
dressings
– Put on disposable gloves and protective clothing/uniform when handling dead bodies
– Hands must be washed after removing gloves and protective clothing
– Embalming should not to be done, but if so Minimize environmental contamination during
embalming
– Viewing of the face without physical contact may be permitted
– Relatives who are worried about having already been exposed to the infection should contact
the physician
– Cremation is recommended for the deceased’s body
8/2/2009 470
Pandemic Influenza A(H1N1) 09 Virus
Bioethics
1. Equity of access to antivirals and
vaccines
2. Transparency, honesty and good Ethical Dilemmas in a Pandemic
Proceedings of the Irish Council for
communications
Bioethics Conference 17th October
2006, Dublin
3. Individual autonomy v. public good
Freedom vs. Quarantine
4. Imperatives of urgency in outbreak Dr. Darina O’Flanagan
situations
5. Duty of care of healthcare workers
and value of reciprocity of employers
8/2/2009 471
Pandemic Influenza A(H1N1) 09 Virus
Global Migration and
Quarantine
The WHO has no free-standing international
quarantine authority “Quarantine” is still a
country-by-country power!
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 472
Pandemic Influenza A(H1N1) 09 Virus
Surveillance
• A quarantine officer monitors passengers
walking through a temperature screening
checkpoint at Suvarnabhumi airport in
Bangkok on April 24
Thermal Scanning
8/2/2009 473
Pandemic Influenza A(H1N1) 09 Virus
Surveillance
• Monitor ... a thermal camera monitors the
body temperature of passengers to identify
possible Influenza A(H1N1)vflu infections at
Incheon International Airport, South Korea /
AP
8/2/2009 474
Pandemic Influenza A(H1N1) 09 Virus
Surveillance Around the World
• A passenger goes through a disinfection process at the
arrival terminal at the Juanda airport in Surabaya, in
Indonesia's East Java province April 27, 2009
July, 12, 2009, thermal
scanning in airports to
decrease due to new
mitigation policy strategy
published from WHO!
8/2/2009 475
Pandemic Influenza A(H1N1) 09 Virus
Preventive Methods
1. Isolation Suspected swine flu patient
(left) is escorted by a
quarantine officer to
2. Quarantine Ambulance
3. Social Distancing
4. EU and Irish Quarantine Statue hard to find
therefore US example Used!
5. In Ireland voluntary quarantine measures are
presented in HPSC Post Exposure Prophylaxis
“PEP” form
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 477
Pandemic Influenza A(H1N1) 09 Virus
Preventive Methods
• Definitions:
• Isolation
• The separation of an individual, or individuals,
infected with a communicable disease from non
infected individuals either in the home or
hospital
• Quarantine
• The separation of an individual, or individuals,
exposed to a communicable disease, from non
infected and non-exposed individuals
• Social distancing:
• Refer to a range of non quarantined measures
that might serve to reduce contact between
persons, such as, closing of schools or
prohibiting large gathering
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 478
Pandemic Influenza A(H1N1) 09 Virus
New Definition of Quarantine
• “Means the physical separation, including confinement or
restriction of movement, of an individual or individuals who are
present within an affected area, as defined herein, or who are
known to have been exposed or may reasonably be suspected to
have been exposed to a communicable disease of public health
threat and who do not yet show signs or symptoms of infection
with the communicable disease of public health threat in order to
prevent or limit the transmission of the communicable disease of
public health threat to other unexposed and uninfected
individuals.”
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 479
Rationale for Isolation &
Quarantine
• Isolation is a fairly common infection
control measure used to prevent the
spread of disease to non-infected
family, healthcare professionals,
patients, etc.
• Quarantine in an extreme public health Hong Kong Hotel
Quarantined Due
measure used to prevent the spread of to Swine Flu Case
disease to the community 300 people at a Hong Kong
hotel have been placed under
quarantine after a guest
there became China's first
confirmed swine flu case.
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 480
When might Isolation &
Quarantine be Considered?
• Isolation is used primarily in health
care facilities with highly infectious
patients (e.g., varicella, measles, TB)
• Quarantine is used in extreme
circumstances when disease spread
cannot be prevented by other means,
such as by post-exposure prophylaxis
(e.g. ,SARS))
• Quarantine is also used when
exposed individuals refuse other
disease prevention means, such as
vaccination (e.g., smallpox)
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 481
Preconditions to Imposition of
Quarantine or Isolation
• Any quarantine or isolation is implemented in
the least restrictive environment necessary to
contain the communicable disease of public
health threat
• Any quarantined persons shall be confined
separately from any isolated persons
Metropark Hotel
• Upon determining that any quarantined person
Wanchai after a
can be reasonably believed to have become Mexican traveller
infected with a communicable disease of public was determined to
health threat, the infected person shall be have the virus
promptly removed from quarantine and placed
in isolation
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 482
Preconditions to Imposition of
Quarantine or Isolation
• The health and disease status of any quarantined and
isolated persons shall be monitored regularly to determine
if such persons require continued quarantine or isolation
• Any quarantined or isolated persons shall be immediately
released from quarantine or isolation upon a determination
that such quarantined or isolated persons pose no risk of
transmitting the communicable disease of public health
threat to other persons
• The site of any quarantine or isolation shall be, to the
extent practicable, safely and hygienically maintained with
adequate food, clothing, health care, and other essential
needs made available to the persons who are subject to any
order of quarantine and isolation Movie media
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 483
Pandemic Influenza A(H1N1) 09 Virus
Preventive Methods
“Order of Quarantine” US Example
• Ex parte-prepared by the Commissioner:
• Sets forth:
• Nature of the Public Health Threat including the
specific disease if practical
• Reasons why quarantine is required – Voluntary
Compliance has failed or would be ineffective
• Sufficient information to provide notice
• Means by which the quarantine to be Biohazard
implemented warning:
• Geographic parameters (if any) This building
• Duration of quarantine Under
• Penalty for non-compliance Quarantine until
• Provided to those covered individually if possible, further notice
otherwise by a means determined by the
Commissioner
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 484
Pandemic Influenza A(H1N1) 09 Virus
Isolation “Order of Isolation” US Example
• Order of Isolation
• Ex parte-issued by the
Commissioner
• Sets forth:
– Identity of isolated persons
– Bases for the isolation
– Specific communicable disease
– Site of the isolation
– Date and time when isolation
commences
– Any conditions of the isolation
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 485
Pandemic Influenza A(H1N1) 09 Virus
International Quarantine
• BEIJING, May 6 (Xinhua) -- Passengers quarantined in
the Chinese mainland who took the same flight with a
Mexican national later diagnosed with influenza
A/H1N1 in Hong Kong will be out of quarantine on
Thursday if they display no flu-like symptoms, China's
Ministry of Health said Wednesday
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 486
Pandemic Influenza A(H1N1) 09 Virus
Quarantine Airports
• Quarantine Triage “Red” passenger could
get escorted to restricted area RED
(Terminal)
• There will be a documentation, and a
qualified medical expert about the
situation and the upcoming procedures.
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 487
Pandemic Influenza A(H1N1) 09 Virus
International Quarantine Reporting
• Potential Quarantine Database (THAD)(Canadian)
• International Health Regulations
• Border Health Initiatives
• Security and Prosperity Partnership
• Global Public Health Information Network (GPHIN)
• Passive and Active Surveillance
ICU of the Jinan Infectious Disease
Hospital in Jinan,China
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 488
Pandemic Influenza A(H1N1) 09 Virus
Quarantine Ethics
• Targeting versus stigmatizing
• Care in all communications
• Public health officials,
clinicians & the community
must combat fear, stigma
and discrimination through
health education and
communication
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 489
Pandemic Influenza A(H1N1) 09 Virus
In-Shelter Isolation
Biohazard warning:
This House Has been
self quarantined
until further notice
Please keep Clear by 20 feet
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 490
Pandemic Influenza A(H1N1) 09 Virus
International Quarantine
Recommendations
• Quarantine is a net not a shield
• Enhance communication strategies
• Use traveller data to inform syndromic definitions
• Create port risk assessment tool
• Identify essential key partners for training
– Border Services
– Cruise Lines and Airlines
– Cargo Ships
• Establish International Quarantine Working Group
QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER QUARANTINE DO NOT ENTER
8/2/2009 491
Public Health Management for Contacts of
Probable or Confirmed Case of on a Aircraft
(Update June 2 2009)
8/2/2009 492
Influenza has a 72% attack rate in exposed
persons
in a 4.5 hour plane flight
Communicability is highest 1-2 days
before to 4-5 days after onset
REMEMBER – SOCIAL
DISTANCING IS 6 FEET!
8/2/2009 493
Pandemic Influenza A(H1N1) 09 Virus
Management OF Passengers Or Crew Members With
Symptoms Of Influenza
• Minimize the number of personnel directly exposed to the ill person
Separate the ill person (6 feet) from others as much as possible without
compromising flight safety
• Have the ill person wear a facemask, if it can be tolerated, to reduce the
number of droplets coughed or sneezed into the air
• If a facemask can not be tolerated, provide tissues and ask the ill person to
cover his or her mouth and nose when coughing or sneezing along with a
plastic bag for proper disposal of contaminated tissues
• Gloves are not intended to replace proper hand hygiene. Gloves should be
carefully removed and discarded and hands should be cleaned
immediately following activities involving contact with body fluids. Gloves
should not be washed or reused
• Personnel having close contact with an ill person should wear a facemask
at a minimum or, ideally, a NIOSH-certified particulate respirator rated N-
95 or better Leaflets warning
passengers of possible
• Dispose of soiled material, gloves, items contaminated with body fluids,
and disposable respirators in a sturdy plastic bag that is tied shut and not swine flu symptoms
reopened, and disposed of according to state solid waste regulations
8/2/2009 494
Pandemic Influenza A(H1N1) 09 Virus
Irish Port Health Travel Alert Resources
• 29 April, 2009, notices were put in place at
Irish ports and airports
8/2/2009 495
Pandemic Influenza A(H1N1) 09 Virus
Risk Travel Advisories
• Department of Health and Children
and Department of Foreign Affairs
travel advisory July, 31, 2009
Chinese health workers in protective outfits examine passengers
onboard an AeroMexico flight AM 98 that landed at Pudong
international airport in Shanghai from Mexico Thursday, April 30, 2009
8/2/2009 496
Irish Embassy in México
• Embassy • Ambassador
His Excellency Dermot Brangan
Travel Advisory
• Address: First Secretary Security Status
Embassy of Ireland Sarah Mangan May 18 2009
Secretary
Cda. Blvd. Avila Camacho, 76-3
Myles Doherty
Col. Lomas de Chapultepec Honorary Consulate
11000 Mexico D.F. • Address:
Mexico Honorary Consulate of Ireland
Telephone: Av. Coba 15
Mza.8
+52 55 5520 5803 SM22
Fax: Cancún Security Status
77500 Quintana Roo Aug , 1, 2009
+ (52 55) 55 20 58 92
Telephone:
Email: +52 998 112 5436
Submit your query here Fax:
Website: +52 998 884 9940
www.irishembassy.com.mx Email: Exercise Caution
consul@gruporoyale.com
Honorary Consul:
Anthony Leeman
8/2/2009 497
HPSC Travel Precautions
• Travelling Precautions • Do not travel or fly home if you are ill
• Familiarise yourself with sources of health • If you become ill during a flight you should
advice in the country of travel, and pay inform the cabin crew
attention to local government and public • Cover your nose and mouth with a tissue
health announcements including any when coughing, sneezing or wiping and
movement restrictions and prevention dispose of tissues into a bin immediately
recommendations • If you are caring for someone who is ill, try to
• Avoid close contact with people who have ensure they are not in close contact with
fever, sneezing or cough others. Wearing a mask may be protective,
• General advice includes frequent and for those who are caring for someone with
thorough hand washing with soap and water, influenza
or alcohol based hand cleaners
• Clean surfaces regularly to get rid of germs
• If you are sick, avoid close contact with
others, stay at home or in your hotel room.
• If you have a mild flu-like illness seek medical
advice over the phone if practical
• Seek medical care if severely ill
8/2/2009 498
Pandemic Influenza A(H1N1) 09 Virus
Advice for Travellers to Ireland Update
8/2/2009 499
Pandemic Influenza A(H1N1) 09 Virus
Passenger Health Questionnaire
8/2/2009 500
Pandemic Influenza A(H1N1) 09 Virus
Sydney Harbour Cruise Ship Quarantine?
• The Pacific Dawn has already been blamed for a spike in Australian swine flu cases after
authorities last week allowed 2,000 passengers to disembark in Sydney despite a
suspected swine flu outbreak aboard
• At least 46 passengers and crew aboard a previous Pacific Dawn cruise that docked at
Sydney a week ago have been infected with the virus
• June, 1, 2009 A cruise ship carrying three crew infected with swine flu agreed not to
dock in northern Australia According to information
received from SHIPSAN,
there has been 12 cruise
ships with influenza A(H1N1)
cluster outbreaks since the
beginning of the pandemic,
the first one being reported
on May 25, 2009
Pacific Dawn: Passengers line the upper deck of the P&O Cruises Pacific Dawn ship as it docks at Darling
Harbour in Sydney 3 days later
• Embarked to emergency medical teams testing for Influenza A(H1N1)!
8/2/2009 505
EU SHIPSAN TRAINET
• EU SHIPSAN TRAINET project which started in 2008 and will be completed in May
2011
• This project foresees the development of:
a) Harmonised communicable diseases surveillance including ILI syndrome by using
standardised reporting forms
b) A manual providing hygiene standards (e.g. for disinfection and cleaning), and
outbreak management guidelines for airborne diseases
c) Training of port health personnel and crew members on hygiene issues and
outbreak management
d) A communication network for collection and sharing of surveillance and ship
inspection data among competent authorities
• Eurosurveillance, Volume 14, Issue 21, 28 May 2009
• Perspectives
• Preparedness for the prevention and control of influenza outbreaks on passenger ships in the EU: the SHIPSAN TRAINET project communication
8/2/2009 506
What are the differences between
Pandemic Influenza A(H1N1) 09 Virus and the Common Cold/Seasonal influenza?
General Indicators Pandemic Influenza A(H1N1) Seasonal Influenza
Outbreaks Occurs rarely (three times in 20th century - last in 1968) Outbreaks follow predictable seasonal patterns; occurs annually, usually in
winter, in temperate climates
Immunity No previous exposure; little or no pre-existing immunity Usually some immunity built up from previous exposure
Emergency response Health systems may be overwhelmed Health systems can usually meet public and patient needs
Vaccine Vaccine probably would not be available in the early stages of a pandemic Vaccine developed based on known flu strains and available for annual flu
season
Non pharmaceutical Intervention May cause major impact on society (e.g. widespread restrictions on travel, Generally causes modest impact on society (e.g., some school closing,
closings of schools and businesses, cancellation of large public gatherings) encouragement of people who are sick to stay home)
Antivirals Effective antivirals may be in limited supply Adequate supplies of antivirals are usually available
Econmy Potential for severe impact on domestic and world economy Manageable impact on domestic and world economy
Symptoms Pandemic Influenza A(H1N1) Common cold
Onset Suddenly Slowly
Fever Characteristically High (≥38oC or 100oF) Rare
Headache Prominent Rare
General aches and pain Usual, often severe Rare
Fatigue, weakness Can be prolonged for a number of weeks Quite mild
Extreme exhaustion Early and prominent Never
Stuffy nose Sometimes Common
Sneezing Sometimes Usual
Sore throat Sometimes Common
Chest discomfort, cough Common, can be severe Mild to moderate, hacking cough
Diarrhoea, vomiting Commonly Not associated with the common cold in adults
8/2/2009 508
Personal Steps To Take
If you Experience Flu-like Symptoms
• Contact hospital or healthcare facility prior to going to allow phone triage
and allow time to have precautionary measures in place before arrival! 509
8/2/2009
Pandemic Influenza A(H1N1) 09 Virus
Adult Emergency Warning Signs for Consult or Re-consult
• In adults, emergency warning signs that need
urgent medical attention include:
• Difficulty breathing or shortness of breath
• Coughing up bloody sputum
• Pain or pressure in the chest or abdomen
• Sudden dizziness
• Drowsiness , disorientation or confusion
• Severe or persistent vomiting
• Fever for 4-5 days and not resolving or once
feeling better and then developing a high fever If you have taken the basic care steps outlined
above and you start to feel worse, or if after a few
days you are not feeling better, you may need
further advice from your doctor.
Contact you doctor by phone or the FluInformation
Line (Freephone 1800 94 11 00)
8/2/2009 510
Pandemic Influenza A(H1N1) 09 Virus
Children Emergency Warning Signs for Consult or Re-consult
• In children emergency warning signs
that need urgent medical attention
include:
• Fast breathing or trouble breathing
• Bluish skin colour
• Not drinking enough fluids
• Not waking up or not interacting
• Being so irritable that the child does not
want to be held
• Flu-like symptoms improve but then
return with fever and worse cough
• Fever with a rash
8/2/2009 511
Pandemic Influenza A(H1N1) 09 Virus in
Educational Institutions/Schools
8/2/2009 512
Reactive and Proactive
School Closures in Europe
• ECDC:
• 4 types of school closures:
1. School closure:
– Closing a school and sending all the children and staff home
2. Class dismissal:
– A school remains open with administrative staff but most children stay
home
3. Reactive closure:
– Closing a school when many children and/or staff are experiencing illness
4. Proactive closure:
– School closure or class dismissal before significant transmission among the
school children occurs
8/2/2009 513
Pandemic Influenza A(H1N1) 09 Virus
Co Mayo , “St John's National School”
• St John's National School in Breaffy near Castlebar, Co Mayo
• 7 year old girl in first class has now been quarantined and is
responding well to treatment at home
• Transmission occurred from relative returning from abroad
• Theses children meet Influenza A(H1N1) contact case
definition and post- exposure prophylaxis protocol!
• Therefore anti-viral medication will now be provided to 28 St John's National School
in Breaffy
children who were in the girl's class
• The HSE said that the school remains open! Unless the
Department of Public Health advises the school to close
• Parents voluntarily have removed some children as a
precautionary measure
• All children will see there GP upon returning to school !
• Contact HPSC immediately upon probable or confirmed case
in schools!
Influenza A(H1N1)virus has been identified at a National School in Co Roscommon. (July,
2, 2009)
• Roxboro NS is a five-teacher school with more than 130 pupils
8/2/2009 514
Pandemic Influenza A(H1N1) 09 Virus
Irish School Recommendations
• This virus currently appears to be acting like seasonal influenza in terms of the severity
of illness and transmission of infection. Given this information, schools can remain
open with appropriate isolation of the individuals at home or close school at their
discretion, based on public health and community assessment
• Other recommendations for schools are as follows:
• Each morning, parents and caregivers should assess all family members and especially
school-age children for influenza-like illness (defined above)
• School staff should assess themselves for influenza-like illness
• Students or staff with influenza-like illness should stay home and not attend school for
at least 7 days even if their symptoms resolve sooner
• If after 7 days, the student or staff continues to have acute symptoms, he or she should Mekkah Stamps, 6, (left) and Mark
stay home until 24 hours after these symptoms resolve Vazquez, 5, (right) prepare to serve
snacks while wearing protective gloves
• Schools should observe students and staff for influenza-like illness at school as a prevention against swine flu at
• Students and staff who are ill should be removed from the classroom and sent home Children's House daycare
• If a student or staff is ill with other symptoms, they should stay home at least one day
to observe how the illness develops
• Students and staff with influenza-like illness should stay home and not go into the
community unless they need medical care. Ill students should not attend
extracurricular activities, community activities or child care
• Environmental services should follow routine cleaning and disinfection procedures for
all school buildings. No special cleaning or disinfection products are recommended.
Environmental services staff should use appropriate personal protective equipment
including gloves when using chemical cleaners or disinfectants
• Childcare facilities should clean and sanitize frequently-touched surfaces, (such as
desks, doorknobs, computer keyboards, toys) routinely and if they become visibly
soiled Adapted from CDC School (K – 12) Dismissal and Childcare Facilities
8/2/2009 515
Public Health Management of Pandemic Influenza
A(H1N1) 09 Virus in Educational Institutions
• Guidelines for Departments of Public Health on the management of a probable/confirmed case
of Influenza A (H1N1) in an educational institution/school/childcare setting update July ,31, 2009
• Topics covered:
• Frequently asked questions: Influenza A (H1N1)v (Swine Flu) information for parents
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3900,en.pdf
• Frequently asked questions: Influenza A (H1N1)v (Swine Flu) information for educational
institutions
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3725,en.pdf
• Guidance for Third Level Institutions in preparing for Influenza A (H1N1)v.
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3822,en.pdf
• Guidance for Departments of Public Health on the management of Influenza A (H1N1)v in an
educational institution
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3820,en.pdf
• Guidance for residential educational institutions in preparing for Influenza A (H1N1)v.
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3891,en.pdf
• Guidance for Crèches/Preschool Settings in preparing for Influenza A (H1N1)v.
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3890,en.pdf
• Frequently asked questions: Influenza A (H1N1) in Educational Institutions/Schools. Information
for Educational Institutions.
• http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/EducationalandChildcaresettings/File,3891,en.pdf
Pages 1-12
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HPSC Pandemic Checklist for
Third Level Institutions
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HPSC Pandemic Checklist for
Third Level Institutions
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Pandemic Influenza A(H1N1) 09 Virus Irish School JI-6 th Year Check List
Example
1.0 Mitigation and Actions
Prevention:
Completed In Progress Not Started
Create a committee to produce a plan for the preschool or child care program to deal with pandemic flu
• The committee should include (if possible
• Staff members
• Representatives from the local school districts
• Director of the program or preschool
• Representative from the family child care organization
• Parents/family members
Completed In Progress Not Started
Assign staff to identify reliable sources of information; watch for public health warnings about flu, program closings, and other actions taken to
prevent the spread of flu
Contact the local health department [find a list of local health officers at (Outside Source)] to learn who in your area has legal authority to close child
care programs if there is a flu emergency
Review your facility’s disaster and mass casualty plan and determine if any changes need to be made to respond to pandemic flu.
Identify all the ways a flu pandemic might affect your program and develop a plan of action
Identify individual(s) in your program who will educate and supervise children, staff, and families about washing hands, following hygiene/cough
etiquette, obtaining seasonal influenza vaccine, and staying home when sick
Develop and implement procedures for routinely sanitizing toys, furniture, and surface areas in your facility
Develop communication and dissemination plans for staff and families, including information about schedule changes, busing changes, and possible
school or center closures
Encourage families to have a backup plan for finding care for their children if the program is closed during a flu pandemic or if their child is ill. Give
them ideas about where they might seek help based on your knowledge of the local child care community
L earn about services in your area that can help your staff, children, and their families deal with stress and other problems caused by a flu pandemic.
Contact the local mental health department
Stage a tabletop drill with key staff members to test your plan and then improve it as needed. Repeat the drill from time to time. Consider
volunteering to help in tests of community plans
Talk to other child care and preschool programs in your area to share information that could make your plan better. Discuss ways programs could
work together to produce a stronger plan and pool resources
Anticipate the potential fear and anxiety of staff, children, and families due to rumors and misinformation, and plan communications accordingly.
Consider developing key messages for various scenarios
Not everything on this list will apply to every child care agency and preschool. This list will serve
as a guide to child care agencies as they develop their own plans. It is important for all child care
agencies to communicate with and know the rules and policies of local agencies, such as the local
8/2/2009 health department and local office of emergency services. Both of these agencies will have 519
important roles if there is a pandemic
Pandemic Influenza A(H1N1) 09 Virus Irish School JI-6th Year Check List Example
2.0 Preparedness: Actions
Completed In Progress Not Started
Give staff and children’s families reliable information in their language and at their reading level on the issues listed below::
How to recognize a person who may have the flu and what to do if they think they have the flu
How to care for ill family members
Teach staff, children, and their families how to limit the spread of infection by using good hand washing; covering the mouth when
coughing or sneezing; and cleaning toys frequently
Educate staff and families about pandemic flu and the school plan. Explain why you need to have a plan. Give them a chance to ask
questions
Plan how you would deal with program closings, staff absences, and gaps in learning that could occur during a flu pandemic
Plan ways to help families continue their child's learning if your child care program or preschool is closed
Plan ways to continue basic functions if your program is closed
Keep on hand a supply of surgical masks and several days’ supply of soap, paper towels, tissues, and cleaning products you will need to
help control the spread of infection
Tell families that experts recommend yearly flu shots for all children six months to five years old and for anyone who cares for children in
that age range
Encourage staff to get flu shots each year
Review procedures for communicating with staff, children, and families
Review the plan for identifying ill children and staff, isolating and masking them as necessary, and sending them home
Identify or develop educational materials for families and staff on topics such as how to support their child(ren) with recovery from
pandemic flu, common symptoms and constructive ways to cope with stress
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Pandemic Influenza A(H1N1) 09 Virus Irish School JI-6th Year Check List
3.0 Response: Actions
Completed In Progress Not Started
Tell families to let your program know if their children are sick or when a family member is sick with taccurate records of when children or staff are absent. Include a
record of the kind of illness that caused the absence (e.g., diarrhea/vomiting, coughing/breathing problems, and rash)
Use a standard set of steps for checking children and adults each day as they arrive to see if they are sick. Make it clear that any child or adult who is ill will not be
admitted
Have a plan for keeping children who become sick at your program away from other children, such as a fixed place for a sick room, until the family arrives. Masking
affected children is also advisable
Require staff members to stay home if they think they might be sick. If they become sick while at the program, require them to go home and stay home
Require ill children to stay at home until their flu symptoms have gone and they feel ready to come back to your program
Hold staff meeting(s) to provide information on the extent of infection in your program and potential changes that may take place.
Conduct timely debriefings with the program pandemic committee to identify lessons learned and make necessary changes to the response plan
4.0 Recovery: Actions
Completed In Progress Not Started
Hold staff meetings and provide information on the extent of pandemic flu in the community
Announce counseling support services that are available to staff. Utilize employee assistance programs for coping with loss and stress
Announce counseling support services that are available to children and families
Provide rest places for those staff and children who tire easily
Make educational materials available to families and staff on topics such as how to support their child with recovery from pandemic flu, common symptoms of loss and
grief, and constructive ways to cope with stress
Identify children, families, and staff who may need long-term physical and mental health support or intervention, and refer them to community resources to provide
these services
Monitor the effects of cumulative stress on caregivers
Consider offering health and mental health services, if available, by community university, or public/nonprofit mental health agencies, and identify funding to support
these services
Modify work roles and responsibilities or consider adding volunteer or support staff as needed
Document “lessons learned” and incorporate them into revisions and training
8/2/2009 521
Recommendations Regarding Prevention and
Management of ILI in Residential Summer Camps
• Interim guidance to Public Health authorities regarding day camps and residential summer camps for the
prevention and management of influenza-like illness (ILI) suspected to be due to Influenza A(H1N1)v
Recommendations Actions
regarding
Rationale: Reports of illness among school aged children and transmission within the school setting have been noted. With similar age groups typically attending day camps, it is
Prevention and possible that the risk of transmission of H1N1 flu virus in the day camp setting may be similar to that seen in the school setting. In residential camp settings the risk of transmission may
Management of ILI be higher due to the increased proximity and prolonged contact among campers, staff and volunteers
in residential
summer camps
Completed In Progress Not Started Education
Camp Nurse should organise pandemic education with organizers
Consider development and implementation of a training program for camp staff regarding communicable disease control including specific information on
how to recognize and report possible cases of ILI.
Have relevant age appropriate educational materials and information for campers available.
Screening
Passive and active screening (laminated poster are available from HSE upon request)
To help prevent entry of H1N1 flu virus into the camp setting, consider advising all camp attendees, prior to the camp start date, of the following:
Individuals who have had ILI within 7 days prior to arrival will not be allowed to attend.
Individuals who have been a contact of a case of ILI within the 7 days prior to arrival may attend camp and will be monitored (either self monitoring or
actively monitored, whichever is most appropriate for the situation) closely for symptoms of ILI.
Consider active screening of all newly arriving camp attendees by asking if they have had symptoms of ILI within the previous 7 days or have been in
contact with someone who has had ILI within the previous 7 days.
Take a health history of each attendee and note underlying conditions that may place them at high risk for complications of influenza.
Enhanced screening for symptoms of ILI throughout the camp period is advised to ensure early detection of potential cases and intervention as
appropriate.
Completed In Progress Not Started Protocols should be in place for the management of individuals with ILI, including such things as how monitoring and care will be managed (e.g. designate
staff to care for ill persons and recommend they limit their interaction with well persons) and when medical evaluation of ill persons should be considered.
Individuals with severe illness and those at high risk for complications should seek medical advice and/or care.
It is recommended that individuals who develop ILI be separated from the general population until arrangements can be made for them to return home or,
if that is not an option, until 7 days after onset of symptoms.
Please note, individuals who are at high risk of complications from influenza should not be designated as caregivers for ill individuals.
If individual rooms for persons with ILI are not available or feasible, consider cohorting ill individuals by placing those with ILI in a room, cabin or tent
specifically for ill persons, with beds at least 2 meters apart and nearby washroom facilities separate from those used by the healthy population.
Individuals with ILI should only leave the isolation area for medical reasons or other necessities. Whenever a person with ILI leaves the isolation area,
he/she should take measures such as coughing or sneezing into a disposable tissue or sleeve and wearing a face mask, if available, to avoid exposing others to
the virus
Individuals with ILI/or not should be instructed in hand hygiene and respiratory etiquette (age appropriate games)
For additional information regarding care of individuals with ILI, please refer to How to look after someone at home with H1N1 flu virus
http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdvicefortheGeneralPublic/File,3660,en.pdf
“How can I prevent myself from catching Influenza”
http://www.hpsc.ie/hpsc/A-Z/EmergencyPlanning/AvianPandemicInfluenza/SwineInfluenza/AdvicefortheGeneralPublic/File,3662,en.pdf
8/2/2009 522
Pandemic Influenza A(H1N1) 09 Virus
Ambulatory Care Clinics
• In elective ambulatory care clinics (e.g. physiotherapy clinics, Well Baby and Well
Woman clinics, outpatient follow-up clinics), where patients present for
appointments:
• It is suggested that clinic visits for patients who are ill with ILI symptoms be
deferred until they are well
• This may be facilitated by reminder calls to patients to reschedule their
appointments if they have ILI and by signage at the entrance to the clinic
reminding patients to not attend clinic and to reschedule for when their
symptoms have resolved
• The Well Women Centre
• 67, Pembroke Road,Ballsbridge, Dublin 4.
Tuesday / Wednesday 10.00 am - 7.30 pm
Monday / Thursday / Friday 8.00 am - 7.30 pm
Saturdays 10.00 am - 4.00 pm
Tel: (01) 660 9860 / 668 1108 / 6683714
Fax: (01) ) 660 3062
• info@wellwomancentre.ie
8/2/2009 523
Pandemic Influenza A(H1N1) 09 Virus
Breastfeeding Mothers
• The risk for Pandemic Influenza A(H1N1)
09 Virus transmission through breast milk
is unknown
– However, reports of viremia with seasonal
influenza infection are rare
• Suspected or confirmed ill mothers
– Should continue breastfeeding and
increase feeding frequency
• Rational:
– Infants who are not breastfeeding are
particularly vulnerable to infection and
hospitalization for severe respiratory
illness
• Mothers should wear a mask!
• Mask not tolerated, have tissues available
8/2/2009 524
Pandemic Influenza A(H1N1) 09 Virus
Infection Control for Parents
• Instruct parent and caretakers on how to protect their infant from
the spread of germs that cause respiratory illnesses Pandemic
Influenza A(H1N1) 09 Virus :
• Wash adults’ and infants’ hands frequently with soap and water,
especially after infants place their hands in their mouths
• Keep infants and mothers as close together as possible and
encourage early and frequent skin-to-skin contact between mothers
and their infants
• Limit sharing of toys and other items that have been in infants'
mouths. Wash thoroughly with soap and water any items that have
been in infants' mouths
• Keep pacifiers (including the pacifier ring/handle) and other items
out of adults' or other infants' mouths prior to giving to the infant
• Practice cough and sneeze etiquette
8/2/2009 525
Pandemic Influenza A(H1N1) 09 Virus
HPSC On Personal Resources
• Women who are Pregnant or Breastfeeding:
http://www.hpsc.ie/hpsc/A-
Z/EmergencyPlanning/AvianPandemicI
nfluenza/SwineInfluenza/Adviceforthe
GeneralPublic/File,3732,en.pdf
8/2/2009 526
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention
• First and most important: wash your hands
– Try to stay in good general health
– Get plenty of sleep
– Be physically active
– Manage your stress
– Drink plenty of fluids
– Eat nutritious food
• Try not touch surfaces that may be contaminated with the flu virus
• Avoid close contact with people who have symptoms such as fever,
sneezing, coughing or shivering or (Large gatherings i.e.. Oxegen festival)
• There is no indication for using masks except when caring for someone
who may have flu
• Pay close attention to health alerts in the country in which you are
travelling
8/2/2009 528
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention
• If you get sick:
• Stay at home for seven days – avoid spreading infection to others
• Avoid public transport
• Contact your GP
• Use surgical mask if available
• Cover your nose and mouth with disposable tissues when sneezing, coughing,
wiping and blowing your nose
• Dispose of used tissues in the nearest waste bin
• Wash your hands often with soap and water, and especially after coughing and
sneezing. Alcohol-based hand cleaners are appropriate
• Anti-fever (Antipyretic) medication such as paracetamol or aspirin (NB aspirin
should NOT be given to children under 16 years of age)
• Drink plenty of fluids
• Ensure that all household surfaces that are touched by hands are kept clean,
especially doorknobs, light fittings, bedside tables, bathrooms and kitchens
surfaces and children's toys
– Such surfaces should be wiped regularly with a household disinfectant
according to directions on the product label
8/2/2009 529
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention From Spreading the Virus
Preventing the spread of Swine Influenza
includes:
• If you are sick, limit your contact with other
people as much as possible
• Do not go to work or school if ill
• Cover your mouth and nose with a tissue when
coughing or sneezing
• I t may prevent those around you from getting sick
• Put your used tissue in the waste basket
• Cover your cough or sneeze if you do not have a
tissue. Then, clean your hands, and do so every
time you cough or sneeze
8/2/2009 530
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention From Spreading the Virus
• Washing your hands often will help protect you
from germs
• Wash with soap and water or clean with alcohol-
based hand cleaner
• We recommend that when you wash your hands --
with soap and warm water -- that you wash for 15
to 30 seconds, visibly soiled 60 seconds
• When soap and water are not available, alcohol-
based disposable hand wipes or gel sanitizers may
be used
• You can find them in most supermarkets and
drugstores
• If using gel, rub your hands until the gel is dry
– The gel doesn't need water to work; the alcohol in
it kills the germs on your hands
8/2/2009 531
Correct Hand-washing Protocol
1st step: 2nd step: 3rd step:
Palm to palm Palm of right hand over Palm to palm with
Attention: including back of left hand and palm fingers
wrists (30 sec). of left hand over back of Interlaced(30 sec).
right hand(30 sec).
4th step: 5th step: 6th step:
Back of fingers to Rotational rubbing o fright Rotational rubbing, backwards
opposing palms with thumb clasped in left palm and forwards with clasped
fingers interlocked(30 and vice versa (30 sec). fingers of right hand in left
sec). palm and vice versa (30 sec).
8/2/2009 532
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention From Spreading the Virus
• Alcohol-based disposable hand wipes or gel
sanitizers may be used
8/2/2009 533
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention From Spreading the Virus
• Cover your mouth and nose with a tissue when
coughing or sneezing
• No Tissue
8/2/2009 534
Pandemic Influenza A(H1N1) 09 Virus
Personal Prevention From Spreading the Virus
• Respiratory
Etiquette/ Cough
Etiquette
Breaking the Chain
of Infection
8/2/2009 535
Information Leaflet on
Influenza A (H1N1)
• The HSE has produced an
information leaflet for the
public on A(H1N1) 'swine'
Flu and Pandemic Flu.
• Contains Hotline!
• The Flu Information Line is
available 24 hours a day and
is your primary source of
information on Influenza 1-8 pages
A(H1N1). Will be Distributed throughout
• Freephone 1800 94 11 00 Ireland
8/2/2009 536
Guidance For Caring For Persons At
Home With Influenza A(H1N1)
8/2/2009 537
Influenza A (H1N1)
Personal Resources
• People with specific medical conditions:
8/2/2009 538
Influenza A (H1N1)
Personal Resources
• People with HIV AIDS:
8/2/2009 539
European Union
Hand Hygiene Campaigns
8/2/2009 540
Internet Address of National
Campaigns
8/2/2009 541
Many Countries Worldwide
Are Committed To Improve Hand Hygiene
You are part
of a global
movement!
Countries committed in 2005, 2006, 2007 and 2008
Current status, March 2009 Countries planning to commit in 2009
8/2/2009 542
Pandemic Influenza A(H1N1) 09 Virus
UK Mass Media Video
Swine Flu Information - NHS 24
http://www.nhs24.com/content/default.asp?
page=home_SwineFlu
8/2/2009 543
Pandemic Influenza A(H1N1) 09 Virus
Business Continuity
• An outbreak of swine flu dampened tentative
hopes for the global economy, sending markets
lower on Monday and analysts fear a possible
pandemic could force countries further into
recession.
• The World Bank estimated in 2008 that a flu
pandemic could cost $3 trillion and result in a
nearly 5 percent drop in world gross domestic
product, damaging prospects of recovery in a
world economy deep in financial crisis.
8/2/2009 544
Pandemic Influenza A(H1N1) 09 Virus
Business Continuity
• Excellent resource for
Business Continuity
Planning
• Business Continuity
Planning Checklist
Responding to an
Influenza Pandemic
available inside!
8/2/2009 545
Pandemic Influenza A(H1N1) 09 Virus
Checklists
• Hospital Pandemic Influenza Planning Checklist
• Home Health Care Services Pandemic Influenza Planning Checklist
• Health Insurer Pandemic Influenza Planning Checklist
• Travel Industry Pandemic Influenza Planing Checklist
• Business Pandemic Influenza Planning Checklist
• Law Enforcement Pandemic influenza Planning checklist
• Child Care AND Preschool Pandemic Influenza Planning Checklist
• School District (K-12) Pandemic Influenza Planning Checklist
• Colleges And Universities Pandemic Influenza Planning Checklist
• State And Local Pandemic Influenza Planning Checklist
• CDC website for download!
8/2/2009 546
US Summary of Ten Lessons Learned
from the Pandemic Influenza A(H1N1) 09 Virus Outbreak
1. Investments in pandemic planning and stockpiling antiviral
medications paid off
2. Public health departments did not have enough resources to carry
out plans
3. Response plans must be adaptable and science-driven
4. Providing clear, straightforward information to the public was
essential for allaying fears and building trust
5. School closings have major ramifications for students, parents, and
employers
6. Sick leave and policies for limiting mass gatherings were also
problematic http://www.upmc-
biosecurity.org/website/resources/pu
7. Even with a mild outbreak, the health care delivery system was blications/2009/pdf/2009-06-04-
tfah2009-pan-flu-06.pdf
overwhelmed
8. Communication between the public health system and health
providers was not well coordinated
9. WHO pandemic alert phases caused confusion
10. International coordination was more complicated than expected
8/2/2009 547
Pandemic Influenza A(H1N1) 09 Virus
Case
!
Studies
The purpose of these case studies is to give a better
picture of the interrelationships of pandemic
preparedness and mitigation efforts in foreseeing and
managing an emerging pandemic on a global scale !
8/2/2009 548
Pandemic Influenza A(H1N1) 09 Virus
Overview of Case Studies
from Spain, England, and México
Added feature
“How do they do it!”
Estimation of the Reproduction Ratio
for influenza A(H1N1) in México
Overview of Euro Surveillance Articles
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
8/2/2009 549
Influenza A(H1N1)
Case Studies Objectives
• Review Spain's Case Study
• Review England's case Study
• Review preliminary estimation of the
reproduction ratio for new influenza A(H1N1)
from the outbreak in México
8/2/2009 550
Pandemic Influenza A(H1N1) 09 Virus
Spain Case Study Overview
Pandemic Influenza A(H1N1) 09 Virus
infections in Spain, April-May 2009
http://www.eurosurveillance.org/ViewArticl
e.aspx?ArticleId=19209
Overview of Euro Surveillance Articles
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
8/2/2009 551
Influenza A(H1N1)
Spain Surveillance Teams
• Coordinating Centre for Health Alerts and
Emergencies, Spanish Ministry of Health and
Social Policy, Madrid, Spain
• National Centre for Epidemiology and National
Centre for Microbiology, Instituto de Salud
Carlos III, Madrid, Spain
• Regional Surveillance and Alert Teams from
the Autonomous Communities in Spain
• National Influenza Laboratory Network, Spain
8/2/2009 552
Geographical distribution of
Influenza A (H1N1)
cases of laboratory-confirmed
new influenza virus A(H1N1)
infection, Spain
Spain Outbreak 2009
As of July, 8, 2009, a total of 870 laboratory-confirmed cases and 127 In-
La Rioja country transmissions of Influenza A(H1N1)v flu virus have been reported
Asturias Cantabria Pais Vasco
Galicia Navarre
Castile and Leon Aragon
Community of Madrid Catalonia
Extremadura Castile-La Manchu
Balearic islands
Still updating regions on next report
Valencia Community
Region of Murcia
Canary Islanders Melilla
Andalusia
8/2/2009 553
“Pandemic (H1N1) 2009”
United Kingdom Age-group and Gender Report
• Confirmed cases with “Pandemic (H1N1) 2009” by
age group and sex (01 July 2009), England.
The 5-14 year olds remain the age group predominantly affected
8/2/2009 554
Case definition and case classification, Pandemic
Influenza A(H1N1) 09 Virus infection, Spain, 25 April-7
May, 2009
8/2/2009 556
Pandemic Influenza A(H1N1) 09 Virus
Spain's Confirmed Cases
• Confirmed cases of new influenza virus A(H1N1)
• As of 11 May, 98 laboratory-confirmed cases of infection with the new
influenza virus A(H1N1) have been reported in Spain out of 640 possible
cases investigated. The geographical distribution of reported cases by
region is shown in
8/2/2009 557
Spain's Geographical distribution
Confirmed Cases
• Seventy-six confirmed cases (78%) acquired the infection abroad; all these cases
had a history of travel to Mexico. Of the 45 cases for whom this information was
available, 16 (36%) were symptomatic during the inbound flight from Mexico.
Dates of return from affected areas were available for 70 confirmed cases and
ranged from 20 to 29 April
8/2/2009 558
Cases of laboratory-confirmed new
influenza virus A(H1N1) infection
• Cases of laboratory-confirmed new influenza virus A(H1N1) infection, by date of
travel return to Spain, as of 11 May, 2009 (n=70) Information on disease onset was
available for 93 cases. The first of the 93 cases reported onset of illness (any
symptom) on 19 April, and the most recent case reported onset on 4 May
8/2/2009 559
Geographical distribution
• Geographical distribution of cases of laboratory-
confirmed new influenza virus A(H1N1) infection,
Spain, as of 11 May 2009
8/2/2009 560
Influenza A(H1N1) “Spain”
Demographic and Clinical Features
• Cases ranged in age from 14 to 55 years, with an average of 24 years (standard deviation (SD)
6.3) and a median of 22; 50 (51%) cases were male.
• The most frequently reported symptoms were fever (96%) and cough (95%). Four cases did
not have fever. Among 41 cases for whom this information was available, 17 (41%) reported
diarrhoea
8/2/2009 561
Influenza A(H1N1) “Spain”
Specimens
• Nose and throat swabs from cases who met clinical and
epidemiological criteria were taken and referred to the
national influenza reference laboratory (WHO National
Influenza Centre) at the Instituto de Salud Carlos III for
confirmation
• Two independent assays have been used for diagnosis
• Reverse transcription (RT)-nested PCR designed for typing
the nucleoprotein gene and another one for subtyping the
haemagglutinin gene
• An alternative RT-PCR was done in case the first two PCR
gave contradictory results
• The strain identified in all cases was confirmed as
genetically similar to viruses previously isolated from
cases in California (A/California/04/2009
8/2/2009 562
Influenza A(H1N1) “Spain”
Discussion
• Spain was the first country in Europe to report a laboratory-
confirmed case of new influenza A(H1N1) virus
• Several factors may have contributed:
• Intense air traffic and contacts with Mexico
• Timely alert with high media coverage that raised early
awareness among public health and healthcare
professionals, as well as among the public.
• Extremely efficient surveillance system and a sensitive case
definition that was distributed early in the event made it
possible to detect cases at the very beginning of the
outbreak and to trace more than 2,000 close contacts
8/2/2009 563
Influenza A(H1N1) “Spain”
Conclusion
• Conclusion
• The evolution of this outbreak of influenza
A(H1N1) in Spain is difficult to predict. Though
notification of new confirmed cases has
decreased and the disease seems mild, they will
continue to monitor changes in the epidemiology
and/or clinical severity of new influenza A(H1N1)
virus infections in Spain in order to implement
appropriate prevention and control measures.
8/2/2009 564
References
Epidemiology of new influenza A(H1N1)
in the United Kingdom, April - May 2009
http://www.eurosurveillance.org/View
Article.aspx?ArticleId=19213
8/2/2009 565
Pandemic Influenza A(H1N1) 09 Virus
England Case Study
Epidemiology of new influenza A(H1N1)
in the United Kingdom, April - May 2009
http://www.eurosurveillance.org/View
Article.aspx?ArticleId=19213
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
8/2/2009 566
Pandemic Influenza A(H1N1) 09 Virus
England's Surveillance Teams
• Health Protection Agency and Health
Protection Scotland :
• Health Protection Agency, London, United
Kingdom
• Health Protection Scotland, Glasgow, United
Kingdom
8/2/2009 567
Pandemic Influenza A(H1N1) 09 Virus
United Kingdom Outbreak 2009
7,447 Confirmed Cases as and 4 death of July, 2, 2009
New reporting system in UK as of Scotland- 1217
July, 2,2009
Death - 2
Northeast - 47
Northern Ireland - 34
Yorkshire and
Humberside - 143
North West - 97 East Midlands - 147
East of England - 411
Wales - 34
London – 1,939
West Midlands – 2,582
Death - 1
Death - 1
South West - 198 South East - 598
8/2/2009 569
Cases of laboratory confirmed swine-lineage
influenza A H1N1 by age-group and gender,
02 June 2009 United Kingdom
• Confirmed cases with influenza A/H1N1v by
age group and sex (01 July 2009), England.
8/2/2009 570
Cases of laboratory confirmed swine-lineage
influenza A H1N1 by age-group and gender,
02 June 2009 United Kingdom
8/2/2009 571
Cases of laboratory confirmed swine-lineage influenza
A H1N1 by day of onset and assumed mode of
transmission, June 08 2009
• Cases of laboratory confirmed swine-lineage influenza A H1N1 by
day of onset and assumed mode of transmission, 08 June 2009
(n=360*), United Kingdom
8/2/2009 572
United Kingdom
Transmission Mode Summary
• Of those assumed acquired in the UK:
• Cases assumed to have acquired their
infection as a result of travel – 128
Cases assumed to have acquired their
infection in the UK – 254
Data is still being followed up on 239 cases
• The majority of cases are in school age
children and young adults
8/2/2009 573
HPA Swine Influenza Case Definition
9th May 2009 version 2.0
• The Health Protection Agency is using the • Epidemiological criteria
following case definition for swine flu. • At least ONE of the following:
• Clinical criteria – Onset of symptoms within seven days of visiting areas
where sustained human to human transmission of
• Any person with ONE of the following: swine influenza A/H1N1 is occurring*
• Fever *≥38°C] OR a history of fever, AND – Onset of symptoms within seven days of close contact
with a probable or confirmed case swine flu A (H1N1)
• flu-like illness (TWO O R MORE of the following virus infection.
symptoms: cough, sore throat, rhinorrhea, limb /
joint pain, headache, vomiting / diarrhoea) OR • Case classification:
• Severe / life-threatening illness suggestive of an • A. Possible case
infectious process. – Any person meeting the clinical and epidemiological
criteria
• B. Probable case
• Laboratory criteria
– Any person meeting the clinical and epidemiological
• At least ONE of the following tests: criteria AND with a positive influenza A infection which
– Specific PCR for swine influenza is untypable
– Four-fold rise in swine influenza A (H1N1) virus specific • C. Confirmed case
antibodies (acute phase sera and convalescent >10-14 – Any person with laboratory confirmation
days later)
• D. Discarded case
– Any suspect case not fulfilling the possible case
definition, a possible case that tests flu A negative or a
probable case that tests swine influenza H1N1
negative.
8/2/2009 574
Influenza A(H1N1)
England Case Study Overview
• On 27 April, the first two confirmed United
Kingdom cases of new influenza A(H1N1) virus
infection were reported in Scotland, in a
couple returning from travel to Mexico.
• Health Protection Agency (HPA) and the
Devolved Administrations strengthened
national surveillance of respiratory illness
amongst travellers returning from affected
areas
8/2/2009 575
Cases of laboratory confirmed new
influenza A(H1N1)
• Cases of laboratory confirmed new influenza
A(H1N1) by day of report and travel history, United
Kingdom, 11 May 2009 (n=65)
8/2/2009 576
Cases of laboratory confirmed new
influenza A(H1N1) by age group and sex
• Cases of laboratory confirmed new influenza
A(H1N1) by age group and sex, United
Kingdom, 11 May 2009 (n=65)
8/2/2009 577
Influenza A(H1N1)
Confirmed Travel history
• 65 cases, twenty-four reported a history of recent
travel from Mexico and five from the US
• 36 (56%) cases report no recent overseas travel
and acquired their infection through secondary
transmission in the United Kingdom
• Cases are mainly affecting 10-19 year olds
• Secondary cases are linked to transmission in
different household/close contact settings and
schools
8/2/2009 578
Influenza A(H1N1)
Clinical picture
• The First Few Hundred (FF100 project) aims to
collect information about a limited number of the
earliest laboratory confirmed cases of new
influenza A(H1N1) and their close contacts
• Purpose:
• Gain an early understanding of some of the key
clinical, epidemiological, and virological
parameters of the new influenza A(H1N1) virus
• To facilitate real-time modelling efforts to make
predictions of the future course of the United
Kingdom epidemic
8/2/2009 579
Influenza A(H1N1)
Clinical signs and Symptoms
• Signs and symptoms • Children were more likely to
include: have:
• Fever (94%), – Dry cough (83% vs. 55% OR =
5.7 95% CI: 0.97-34.2)
• Sore throat (82%) – Malaise (89% vs. 69% OR =
• Headache (81%) 8.1 95% CI 0.78-85.0)
• Chills (80%) – Epistaxis (24% vs. 6% OR = 4.9
95% CI: 0.46-52.4) than
• Malaise (80%) adults.
• Diarrhoea (28%) – Females were more likely to
• Arthralgia (56%) were vomit than males (40% vs.
11%, OR=6.7; 95% CI: 1.1-
moderately frequently 41.1) and have diarrhoea
reported. (39% vs. 14%, OR = 4.0 95%
• Epistaxis and one a seizure CI: 0.8-19.8).
(Five cases)
8/2/2009 580
Influenza A(H1N1)
England Case Study Conclusions
• United Kingdom continues to observe sporadic
importations of new influenza A(H1N1) virus from
affected areas predominately Mexico
• Healthy young adults and children are being
proportionately more affected than other parts of the
population
• Based on the limited United Kingdom case series to
date; the clinical presentation of cases continues to be
relatively mild.
• Further work is on-going to describe more fully the
emerging epidemiological, virological and clinical
characteristics of this new influenza A(H1N1).
8/2/2009 581
Estimation of the Reproduction
Ratio for influenza A(H1N1) from the
Outbreak in Mexico
“How do They do It”
Boëlle PY, Bernillon P, Desenclos JC. A preliminary
estimation of the reproduction ratio for new influenza
A(H1N1) from the outbreak in Mexico, March-April 2009.
Euro Surveill. 2009;14(19):pii=19205. Available online:
http://www.eurosurveillance.org/ViewArticle.aspx?Article
Id=19205
Overview of Euro Surveillance Articles
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
8/2/2009 582
Pandemic Influenza A(H1N1) 09 Virus
México Outbreak 2009 As of June, 26, 2009
Aguascalientes - 94 Hidalgo - 242 Morelos - 95 Querétaro - 141
Baja California - 79 Jalisco - 333 Nayarit - 73 Quintana Roo - 57
Baja California Sur - 8 San Luis Potosí - 372
As of June 24
Campeche- 38 2009 Sinaloa - 8
Laboratory
Chiapas - 55 confirmed Sonora - 66
cases 8,279
Chihuahua - 58 Tabasco - 246
Deaths - 116
Tamaulipas - 68
Coahuila - 2
Tlaxcala - 69
Colima - 26
Veracruz - 321
Durango- 19 Federal District -1824 Nuevo León- 64
Yucatan - 97
Guanajuato - 79
Mexico State - 280 Oaxaca - 79
Guerrero - 214 Zacatecas - 237
Michoacán - 156 Puebla - 59
8/2/2009 583
Individual regions #’s are days behind
Influenza A (H1N1)
México Age Specific Attack Rate May 13
8/2/2009 587
México
• Figure shows the number of confirmed (N = 97) and probable (N = 260)*
cases of swine-origin influenza A (H1N1) virus (S-OIV) infection, by date of
illness onset, in Mexico, during March 15 to April 26, 2009.
• From March 15 through April 17, the daily number of confirmed and
probable cases combined did not exceed five cases. However, the start of
a substantial increase is indicated on April 18. This increase peaks at
approximately 55 cases on April 22 and 23, before declining to fewer than
10 cases on April 26.
8/2/2009 588
Influenza A (H1N1)
Summary of Age Specific Clinical Signs and
Fatality Rate May 20 2009
8/2/2009 589
Influenza A (H1N1)
México Age Specific Attack Rate May 20
8/2/2009 590
México's Age Specific Case Fatality
Rate
8/2/2009 591
México Current Situation
8/2/2009 592
HPA Case Study Mexico's
Hospitalization and Deaths
8/2/2009 593
Estimation of the
Reproduction Ratio in México
• Purpose:
• Sustained human-to-human transmission is
necessary to trigger influenza pandemic and
estimating the reproduction ratio (average
number of secondary cases per primary case)
is necessary for forecasting the spread of
infection and forecasting mitigation measures
8/2/2009 594
Estimation of the Reproduction Ratio
In México
• Two parameters must be estimated for this
new virus using mathematical and
computational models:
1. The reproduction ratio (R), which measures
the average number of secondary cases per
primary case
2. The generation interval, which measures the
average time between infection in a primary
case and its secondary cases
8/2/2009 595
Estimation of the Reproduction Ratio for
Influenza A (H1N1)
Methods for Estimating R
• Two different approaches were used to
estimate R:
• M1 - Intrinsic growth rate
• M2 - Real time estimation
8/2/2009 596
Methods for Estimating
Generation Interval Distribution
• The two methods require full specification of the
generation interval distribution
• As no information regarding the actual generation
interval in Mexico is available, they used three
plausible candidate values of the generation interval
(denoted GI) derived from different approaches:
• 1. (denoted as PAN) obtained from household studies
from the 1957 and 1968 pandemics
• 2. Derived from viral excretion in experimental
influenza infection (denoted as VIR)
• 3. Hypothetical distribution introduced in Elveback
(denoted ELV)
8/2/2009 597
Methods for Estimating
Generation Interval Distribution
• Their values with mean standard deviation
(SD) were the following:
• PAN = 3.1 +/- 1.9 days
• VIR = 2.6 +/- 1 day
• ELV = 4.6 +/- 1.5 days
8/2/2009 598
Estimation of the Reproduction Ratio for
influenza A(H1N1)
M1 - Intrinsic Growth Rate
• When using M1, the period starting on 9 April
and ending on 24 April yielded the best fit for
exponential growth, with daily rate r = 0.30
[CI95% 0.28-0.34]
8/2/2009 599
Estimation of the Reproduction Ratio for
Influenza A(H1N1)
M2 - Real Time Estimation
• With method M2:
• Estimates of the daily reproduction ratio R(t) in the
outbreak of new influenza A(H1N1) in Mexico, calculated
with method M2 (see Methods) using three generation
interval values: PAN GI (top), VIR GI (middle) and ELV GI
8/2/2009 600
Epidemic Growth Rates and
Reproduction Ratio Estimates
• Epidemic growth rates estimated for the new
influenza A(H1N1) epidemic in Mexico and
corresponding reproduction ratio estimates
calculated with method M1
8/2/2009 601
Results and Conclusion
• A comprehensive analysis of all available data
has independently led to the range of 1.4-1.6
• Early estimates show that the reproduction
ratio in Mexico was in a range similar to that
of past influenza pandemics of 1967-68
8/2/2009 602
Other Case Studies from the ECDC
• Enhanced epidemiological surveillance of influenza A(H1N1)v in Italy
– As of 7 July 2009, a total of 158 laboratory-confirmed cases of influenza A(H1N1)v were reported in Italy, from half of the 21 Italian regions. To date all cases have had symptoms consistent with
seasonal influenza and no severe or fatal cases have been reported. An active surveillance of cases has been set up in Italy in order to undertake appropriate measures to slow down the spread of
the new virus. This report describes the routine and enhanced surveillance currently ongoing in Italy.
• http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19266
• Epidemiology and control of influenza A(H1N1)v in the Netherlands: the first 115 cases
– Introductions of the new influenza A(H1N1) variant virus in the Netherlands led to enhanced surveillance and infection control. By 24 June 2009, 115 cases were reported, of whom 44% were
indigenously acquired. Severity of disease is similar to reports elsewhere. Our point estimate of the effective reproductive number (Re) for the initial phase of the influenza A(H1N1)v epidemic in the
Netherlands was below one. Given that the Re estimate is based on a small number of indigenous cases and a limited time period, it needs to be interpreted cautiously.
• http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19267
• Preliminary descriptive epidemiology of a large school outbreak of influenza A(H1N1)v in the West
Midlands, United Kingdom, May 2009
– This report describes the preliminary results from the investigation of a large school outbreak of influenza A(H1N1)v in Birmingham, United Kingdom in May 2009, when influenza A(H1N1)v was
confirmed in 64 of 175 (36%) symptomatic pupils and members of staff. Initial findings in this study suggest that the symptoms were mild and similar to those of seasonal influenza, with an illness
attack rate of nearly one third.
• http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19264
• An outbreak of influenza A(H1N1)v in a boarding school in South East England, May-June 2009
– An outbreak of influenza A(H1N1)v was confirmed in May and June 2009 in a boarding school in South East England involving 102 symptomatic cases with influenza-like illness. Influenza A(H1N1)v
infection was laboratory-confirmed by PCR in 62 pupils and one member of staff. Control measures were implemented as soon as a case was confirmed and included school closure, active case
finding and treatment as well as post-exposure prophylaxis offered to the entire school population. Had the outbreak had been detected earlier, the school closed earlier and prophylaxis
commenced after the initial cases were detected, we may have seen lower levels of transmission.
• http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19263
• Outbreak of influenza A(H1N1)v without travel history in a school in the Toulouse district, France, June
2009
– In June 2009, for the first time in France, a confirmed outbreak of influenza A(H1N1)v without history of travel occurred in a secondary school in Toulouse district. A total of
15 cases were confirmed among students of which three were asymptomatic. This report describes the outbreak and its public health implications.
• http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=19265
8/2/2009 603
Pandemic System Model
Coming soon!
Performance Improvement in
Preparing for Pandemics
8/2/2009 604
References
See Narration!
8/2/2009 605
Influenza A (H1N1)
Further information and References
• Further information: • International
http://www.hse.ie/eng/ • CDC, US
http://www.dohc.ie • PHAC
http://www.who.int/en
http://www.cdc.gov/swineflu/ • PAHO
http://ecdc.europa.eu/en/ • ECDC
• http://www.nathnac.org/pro/swinefl • HPA, UK
u.htm • WHO
• Links
•
Irish
• Health Service Executive (HSE)
• Department of Health and Children
• Department of Foreign Affairs
• Department of Agriculture
• Irish College of General Practitioners
(ICGP)
8/2/2009 606
Disclaimer:
• The opinions expressed by authors contributing
to this PPT do not necessarily reflect the opinions
of The Irish First Point Responder Institute or the
Editorial team or the institutions with which the
authors are affiliated.
• Neither the Irish First Point Responder Institute
nor any person acting on behalf of the IFPRI is
responsible for the use which might be made of
the information in this PPT.
8/2/2009 616
The End
of
Pandemic Influenza A(H1N1) 09 Virus
“The Pandemic”
By
Michael Fraser RN
Of
Irish First Point
Responder Institute
“Republic of Ireland”
8/2/2009 618
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