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<ul><li>CDD Strong Community-Based Mission & Values </li></ul><ul><ul><ul><li>Neglected disease and commercial disease are...
CDD  aids  C ollaborations Result New leads reveal known drugs that reverse chloroquine resistance
CDD Successfully Builds  Collaborative Drug Discovery Communities <ul><ul><li>DDT, 2009 (14: 261-270):   </li></ul></ul><u...
© 2009 Collaborative Drug Discovery, Inc.
Yes We Can! © 2010 Collaborative Drug Discovery, Inc.
<ul><li>What are the challenges and opportunities for the field? </li></ul><ul><li>How are your priorities changing? </li>...
Networks Selectively Collaborating  “Public-Private Partnerships” # of [compds][targets][indications][experts]  = (xyz)(pd...
CDD Database for Your Private Data Copyright   © 2010 All Rights Reserved Collaborative Drug   Discovery
Collaborate Mode 1 – Big Pharma   with single login to multiple CROs/Biotech groups Copyright   © 2010 All Rights Reserved...
Collaborate Mode 2 – Peer-to-Peer:  Any  Data via Any Query Can Be Securely Shared CDD DB group 1 CDD DB group 2 CDD DB gr...
<ul><li>What are the challenges and opportunities for the field? </li></ul><ul><li>How are your priorities changing? </li>...
Where CDD Adds Value – Moving top Drug Leads Forward  CDD moves top leads forward Value Academics + CDD $0.1M $1M $10M $5M...
<ul><li>1. Spend only 20% on descriptors and algorithms </li></ul><ul><li>2. Selectively share your models with collaborat...
Yes we can…predictions now  can be shared without revealing structures!
The future: Alerts in CDD
CDD Platform <ul><li>Modules:   </li></ul><ul><ul><li>CDD Vault  – Secure place for private data – private by default </li...
Securely Zoom in-and-out of   Private, Collaborative, and/or Public Vaults (Data)  © 2009 Collaborative Drug Discovery, Inc.
<ul><li>Back Pocket </li></ul>Telescopic View of Multiple Vaults & Data Sets © 2010 Collaborative Drug Discovery, Inc.
Simultaneously Search All Vaults & Data Sets: Gets You “Outside the Box” © 2010 Collaborative Drug Discovery, Inc.
New Types of Offerings for a Rapidly Changing Industry <ul><li>CDD Community:  tap into global R&D via “crowd-sourcing” </...
Acknowledgements Copyright   © 2010 All Rights Reserved Collaborative Drug   Discovery <ul><li>Industry :  Eli Lilly & Co....
<ul><li>Start with Strong Mission & Values </li></ul><ul><ul><ul><li>Neglected disease and commercial disease are both cor...
CDD   Collaborative Drug Discovery, Inc. Burlingame, CA www.collaborativedrug.com  Barry A. Bunin, PhD CEO & President  [e...
CDD3 Data Mapper: Intuitive Templates and Previews Simplify Archival Copyright   © 2009 All Rights Reserved Collaborative ...
CDD Projects – More Advanced Collaborate
Collaborative Dashboard for Secure To-the-Minute Global R&D Tracking Copyright   © 2010 All Rights Reserved Collaborative ...
CDD  Case Study: Create a Globally  Connected TB Researcher Community <ul><li>TB Literature and Patent SAR: > 125,000 publ...
CDD database system <ul><li>Web based (log in securely into to your database from any computer). </li></ul><ul><li>We host...
CDD database system: Security overview <ul><li>CDD encrypts all traffic between a user's web browser and our servers once ...
Fundamentally Faster Rate of Innovation Copyright   © 2010 All Rights Reserved Collaborative Drug   Discovery
CDD Search Results View Copyright   © 2010 All Rights Reserved Collaborative Drug   Discovery
Super Simple Scatter Plots
Heat Maps, Controls, & Plate Statistics Copyright   © 2010 All Rights Reserved Collaborative Drug   Discovery
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Cdd mind the health gap 2010 talk.ppt [autosaved]

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CDD Mind the Health Gap 2010 Presentation by Barry Bunin on technology to mine drug discovery data, secure private-to-private, and private-public collaborations.

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  • CDD Experienced Team Innovates and Executes Barry Bunin, PhD (Pres. &amp; Cofounder as first Eli Lilly EIR) Libraria (CEO, Pres.-CSO), Arris Pharmaceuticals (Sr. Scientist), Genentech, UC Berkeley (Ellman), Columbia University, author. Moses Hohman, PhD (Director Software Engineering) Northwestern Assoc. Director of Bioinformatics, Thoughtworks, Inc., U of Chicago (PhD), Harvard ( magna cum laude, Physics) Sylvia Ernst, PhD (Director Community Growth &amp; Sales) Left 800-lb Gorillas: Accelrys-Scitegic, MDL-Elsevier-Beilstein Peter Cohan (BOD &amp; Overall Sales Strategy) Symyx (VP Bus Dev &amp; President-Discovery Tools), MDL (VP Customer Marketing), www.secondderivative.com, author. Omidyar Network, Founders Fund, &amp; Lilly (BOD observers) WSGR (Corporate Counsel), Rina Accountancy (GAAP compliance) Partners: Hub Consortium Members, ChemAxon, DNDi, MMV, Sandler Center… CDD SAB: Christopher Lipinski PhD, James McKerrow, MD PhD, David Roos PhD, Adam Renslo PhD, Wes Van Voorhis, MD PhD
  • CDD Experienced Team Innovates and Executes Barry Bunin, PhD (Pres. &amp; Cofounder as first Eli Lilly EIR) Libraria (CEO, Pres.-CSO), Arris Pharmaceuticals (Sr. Scientist), Genentech, UC Berkeley (Ellman), Columbia University, author. Moses Hohman, PhD (Director Software Engineering) Northwestern Assoc. Director of Bioinformatics, Thoughtworks, Inc., U of Chicago (PhD), Harvard ( magna cum laude, Physics) Sylvia Ernst, PhD (Director Community Growth &amp; Sales) Left 800-lb Gorillas: Accelrys-Scitegic, MDL-Elsevier-Beilstein Peter Cohan (BOD &amp; Overall Sales Strategy) Symyx (VP Bus Dev &amp; President-Discovery Tools), MDL (VP Customer Marketing), www.secondderivative.com, author. Omidyar Network, Founders Fund, &amp; Lilly (BOD observers) WSGR (Corporate Counsel), Rina Accountancy (GAAP compliance) Partners: Hub Consortium Members, ChemAxon, DNDi, MMV, Sandler Center… CDD SAB: Christopher Lipinski PhD, James McKerrow, MD PhD, David Roos PhD, Adam Renslo PhD, Wes Van Voorhis, MD PhD
  • CDD Experienced Team Innovates and Executes Barry Bunin, PhD (Pres. &amp; Cofounder as first Eli Lilly EIR) Libraria (CEO, Pres.-CSO), Arris Pharmaceuticals (Sr. Scientist), Genentech, UC Berkeley (Ellman), Columbia University, author. Moses Hohman, PhD (Director Software Engineering) Northwestern Assoc. Director of Bioinformatics, Thoughtworks, Inc., U of Chicago (PhD), Harvard ( magna cum laude, Physics) Sylvia Ernst, PhD (Director Community Growth &amp; Sales) Left 800-lb Gorillas: Accelrys-Scitegic, MDL-Elsevier-Beilstein Peter Cohan (BOD &amp; Overall Sales Strategy) Symyx (VP Bus Dev &amp; President-Discovery Tools), MDL (VP Customer Marketing), www.secondderivative.com, author. Omidyar Network, Founders Fund, &amp; Lilly (BOD observers) WSGR (Corporate Counsel), Rina Accountancy (GAAP compliance) Partners: Hub Consortium Members, ChemAxon, DNDi, MMV, Sandler Center… CDD SAB: Christopher Lipinski PhD, James McKerrow, MD PhD, David Roos PhD, Adam Renslo PhD, Wes Van Voorhis, MD PhD
  • CDD Experienced Team Innovates and Executes Barry Bunin, PhD (Pres. &amp; Cofounder as first Eli Lilly EIR) Libraria (CEO, Pres.-CSO), Arris Pharmaceuticals (Sr. Scientist), Genentech, UC Berkeley (Ellman), Columbia University, author. Moses Hohman, PhD (Director Software Engineering) Northwestern Assoc. Director of Bioinformatics, Thoughtworks, Inc., U of Chicago (PhD), Harvard ( magna cum laude, Physics) Sylvia Ernst, PhD (Director Community Growth &amp; Sales) Left 800-lb Gorillas: Accelrys-Scitegic, MDL-Elsevier-Beilstein Peter Cohan (BOD &amp; Overall Sales Strategy) Symyx (VP Bus Dev &amp; President-Discovery Tools), MDL (VP Customer Marketing), www.secondderivative.com, author. Omidyar Network, Founders Fund, &amp; Lilly (BOD observers) WSGR (Corporate Counsel), Rina Accountancy (GAAP compliance) Partners: Hub Consortium Members, ChemAxon, DNDi, MMV, Sandler Center… CDD SAB: Christopher Lipinski PhD, James McKerrow, MD PhD, David Roos PhD, Adam Renslo PhD, Wes Van Voorhis, MD PhD
  • Transcript of "Cdd mind the health gap 2010 talk.ppt [autosaved]"

    1. 1. <ul><li>CDD Strong Community-Based Mission & Values </li></ul><ul><ul><ul><li>Neglected disease and commercial disease are both core components </li></ul></ul></ul><ul><ul><ul><li>Collaborative culture – share successes and failures, as much as possible </li></ul></ul></ul><ul><ul><ul><li>Tap leading community expertise with industry focused process </li></ul></ul></ul><ul><li>Do Groundbreaking Work </li></ul><ul><ul><ul><li>Revolutionary approaches to solving critical health problems </li></ul></ul></ul><ul><ul><ul><li>Imagine what would be possible in an ideal world, practically implement </li></ul></ul></ul><ul><ul><ul><li>Discover drugs while changing the nature of the game </li></ul></ul></ul>Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    2. 2. CDD aids C ollaborations Result New leads reveal known drugs that reverse chloroquine resistance
    3. 3. CDD Successfully Builds Collaborative Drug Discovery Communities <ul><ul><li>DDT, 2009 (14: 261-270): </li></ul></ul><ul><ul><li>$2. 9M Tuberculosis B&MGF Project </li></ul></ul><ul><ul><li>>6 Years CDD SaaS in the Cloud </li></ul></ul><ul><ul><li>Thousands of scientists engaged: </li></ul></ul>
    4. 4. © 2009 Collaborative Drug Discovery, Inc.
    5. 5. Yes We Can! © 2010 Collaborative Drug Discovery, Inc.
    6. 6. <ul><li>What are the challenges and opportunities for the field? </li></ul><ul><li>How are your priorities changing? </li></ul><ul><li>What are the emerging bottlenecks? </li></ul><ul><li>What if? </li></ul><ul><ul><li>Any technology, any collaborators, if you had a magic wand… </li></ul></ul>Register for GlaxoSmithKline on CDD Public Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    7. 7. Networks Selectively Collaborating “Public-Private Partnerships” # of [compds][targets][indications][experts] = (xyz)(pdq)(abc)(lmn)
    8. 8. CDD Database for Your Private Data Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    9. 9. Collaborate Mode 1 – Big Pharma with single login to multiple CROs/Biotech groups Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    10. 10. Collaborate Mode 2 – Peer-to-Peer: Any Data via Any Query Can Be Securely Shared CDD DB group 1 CDD DB group 2 CDD DB group 3 CDD DB group 4 Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    11. 11. <ul><li>What are the challenges and opportunities for the field? </li></ul><ul><li>How are your priorities changing? </li></ul><ul><li>What are the emerging bottlenecks? </li></ul><ul><li>What if? </li></ul><ul><ul><li>Any technology, any collaborators, if you had a magic wand… </li></ul></ul>Questions for our Field Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    12. 12. Where CDD Adds Value – Moving top Drug Leads Forward CDD moves top leads forward Value Academics + CDD $0.1M $1M $10M $5M $0.3M Enzymatic Assays Cell Based Functional Assays Animal Efficacy Tox/PK Academic Early Drug Leads -1 yr -2 yr 2 yr Med Chem Lead Optimization 1 yr <ul><li>CDD better than money alone </li></ul>Billion $ Examples: Taxol
    13. 13. <ul><li>1. Spend only 20% on descriptors and algorithms </li></ul><ul><li>2. Selectively share your models with collaborators and control access </li></ul><ul><li>3. Have someone else host the models / predictions </li></ul>What if you could… Copyright © 2010 All Rights Reserved Collaborative Drug Discovery Models Inside company Collaborators Commercial Descriptors Algorithms ADME/Tox data Current investments >$1M/yr >$10-100’s M/yr
    14. 14. Yes we can…predictions now can be shared without revealing structures!
    15. 15. The future: Alerts in CDD
    16. 16. CDD Platform <ul><li>Modules: </li></ul><ul><ul><li>CDD Vault – Secure place for private data – private by default </li></ul></ul><ul><ul><li>CDD Collaborate – Selectively share subsets of data </li></ul></ul><ul><li>Datasets: </li></ul><ul><ul><li>CDD Public – expanding public data sets </li></ul></ul><ul><ul><ul><li>published compounds </li></ul></ul></ul><ul><ul><ul><li>data from community members </li></ul></ul></ul><ul><ul><ul><li>vendor libraries </li></ul></ul></ul><ul><ul><li>Unique to CDD – simultaneously query your private data, collaborators’ data, & public data </li></ul></ul>Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    17. 17. Securely Zoom in-and-out of Private, Collaborative, and/or Public Vaults (Data) © 2009 Collaborative Drug Discovery, Inc.
    18. 18. <ul><li>Back Pocket </li></ul>Telescopic View of Multiple Vaults & Data Sets © 2010 Collaborative Drug Discovery, Inc.
    19. 19. Simultaneously Search All Vaults & Data Sets: Gets You “Outside the Box” © 2010 Collaborative Drug Discovery, Inc.
    20. 20. New Types of Offerings for a Rapidly Changing Industry <ul><li>CDD Community: tap into global R&D via “crowd-sourcing” </li></ul><ul><li>CDD Alliance: better management of your collaborations </li></ul><ul><li>CDD Customize: fast, good, and cost-effective = agile </li></ul>Use CDD Vault™, Collaborate™, Public™ for Global R&D Community
    21. 21. Acknowledgements Copyright © 2010 All Rights Reserved Collaborative Drug Discovery <ul><li>Industry : Eli Lilly & Co., GlaxoSmithKline, Pfizer </li></ul><ul><li>Foundations : Bill & Melinda Gates Foundation, Myelin Repair Foundation </li></ul><ul><ul><li>Initial TB pilot laboratories </li></ul></ul><ul><li>Academics : CDD Researcher Community </li></ul><ul><ul><li>1000s of CDD collaborators from academia, foundations and industry </li></ul></ul><ul><li>CDD : …including ChemAxon Tools under the hood </li></ul><ul><li>Sean Ekins, PhD, DSc (Collaborations Director – Philadelphia) </li></ul><ul><ul><li>Pfizer, Lilly, Concurrent Pharmaceuticals, GeneGo </li></ul></ul><ul><li>Moses Hohman, PhD (VP Software Development – Chicago) </li></ul><ul><ul><li>Northwestern Assoc. Director of Bioinformatics, Thoughtworks, Inc., U of Chicago (PhD), Harvard ( magna cum laude, Physics) </li></ul></ul><ul><li>Sylvia Ernst, PhD (Senior Director Community Growth – Oregon) </li></ul><ul><ul><li>Accelrys-Scitegic, MDL </li></ul></ul><ul><li>Andrea Barry (Senior Director Business Dev – N. Carolina) </li></ul><ul><ul><li>Accelrys-Scitegic, MDL </li></ul></ul><ul><li>Kellan Gregory (Head Community Interests Group – California ) </li></ul><ul><ul><li>Anna Spektor (Community Advocate, ex-IDBS) </li></ul></ul>
    22. 22. <ul><li>Start with Strong Mission & Values </li></ul><ul><ul><ul><li>Neglected disease and commercial disease are both core components </li></ul></ul></ul><ul><ul><ul><li>Collaborative culture – share successes and failures, as much as possible </li></ul></ul></ul><ul><ul><ul><li>Tap leading community expertise with industry focused process </li></ul></ul></ul><ul><li>Do Groundbreaking Work </li></ul><ul><ul><ul><li>Revolutionary approaches to solving critical health problems </li></ul></ul></ul><ul><ul><ul><li>Imagine what would be possible in an ideal world, practically implement </li></ul></ul></ul><ul><ul><ul><li>Discover drugs while changing the nature of the game </li></ul></ul></ul><ul><ul><ul><li>What if…you had a magic wand? </li></ul></ul></ul>Copyright © 2010 All Rights Reserved Collaborative Drug Discovery Answers for Our Field
    23. 23. CDD Collaborative Drug Discovery, Inc. Burlingame, CA www.collaborativedrug.com Barry A. Bunin, PhD CEO & President [email_address] Archive, Mine, Collaborate ®
    24. 24. CDD3 Data Mapper: Intuitive Templates and Previews Simplify Archival Copyright © 2009 All Rights Reserved Collaborative Drug Discovery
    25. 25. CDD Projects – More Advanced Collaborate
    26. 26. Collaborative Dashboard for Secure To-the-Minute Global R&D Tracking Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    27. 27. CDD Case Study: Create a Globally Connected TB Researcher Community <ul><li>TB Literature and Patent SAR: > 125,000 public TB Bioassay data points for all researchers to use </li></ul><ul><li>20 pilot user groups oversubscribed </li></ul><ul><li>5 consortium actively utilizing CDD software for TB research </li></ul><ul><li>Implemented scalable policy for worldwide use (free software, paid services)…beyond the Bill & Melinda Gates Foundation project </li></ul>
    28. 28. CDD database system <ul><li>Web based (log in securely into to your database from any computer). </li></ul><ul><li>We host the server for you (SaaS) </li></ul><ul><li>Highly secure, all traffic encrypted, server in a secure professionally hosted environment. </li></ul>Secure and Low TCO (Total Cost of Ownership) Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    29. 29. CDD database system: Security overview <ul><li>CDD encrypts all traffic between a user's web browser and our servers once the user has logged in. </li></ul><ul><li>CDD does thorough automated testing of our application code, including security tests to make sure one group cannot access another group's private data. </li></ul><ul><li>CDD uses two levels of firewalling (&quot;defense in depth&quot;), hardware and software, for each sensitive server in our server environment. </li></ul><ul><li>CDD encrypts all database and customer file backups using public key cryptography, and the private keys are backed up securely. </li></ul><ul><li>CDD stores user passwords in our database using strong, one-way encryption hashes. </li></ul><ul><li>CDD stays current with all security updates to our system software, firmware and operating systems. </li></ul><ul><li>CDD uses Linux systems in production. </li></ul><ul><li>A number of application security enhancements around password security are being made mandatory. </li></ul><ul><li>Access to production servers and superuser accounts is limited and audited within CDD. </li></ul>Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    30. 30. Fundamentally Faster Rate of Innovation Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    31. 31. CDD Search Results View Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
    32. 32. Super Simple Scatter Plots
    33. 33. Heat Maps, Controls, & Plate Statistics Copyright © 2010 All Rights Reserved Collaborative Drug Discovery
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