Teaching NMR spectroscopy using online resources from rsc

  • 3,112 views
Uploaded on

The Royal Society of Chemistry hosts an online resource, ChemSpider, as a structure centric database for chemists linking over 25 million chemicals to 400 internet sites. As a crowdsourced environment …

The Royal Society of Chemistry hosts an online resource, ChemSpider, as a structure centric database for chemists linking over 25 million chemicals to 400 internet sites. As a crowdsourced environment members of the chemistry community can deposit spectral data to the database. Almost 2000 NMR spectra have been submitted to the database and these are the basis of both a gaming environment for learning NMR spectroscopy, the SpectralGame, as well as a new teaching environment known as SpectraSchool. This presentation will provide an overview of these two online resources and how they may be utilized for the purpose of teaching NMR spectroscopy in an Undergraduate Curriculum.

More in: Technology , Education
  • Full Name Full Name Comment goes here.
    Are you sure you want to
    Your message goes here
No Downloads

Views

Total Views
3,112
On Slideshare
0
From Embeds
0
Number of Embeds
4

Actions

Shares
Downloads
70
Comments
2
Likes
3

Embeds 0

No embeds

Report content

Flagged as inappropriate Flag as inappropriate
Flag as inappropriate

Select your reason for flagging this presentation as inappropriate.

Cancel
    No notes for slide

Transcript

  • 1. Teaching NMR spectroscopy using online resources from the Royal Society of Chemistry Antony J Williams, Alexey Pshenichnov, Valery Tkachenko and Richard Oakley ACS San Diego March 2012
  • 2. NMR Spectroscopy on the Internet Presentations, tutorials and guidance Tables of information Spectral data for download Assigned NMR spectra – tables NMR prediction algorithms – free and commercial RSC is working hard on Spectroscopy….
  • 3. RSC Spectroscopy Resources ChemSpider for storing spectral data > 2000 spectra (www.chemspider.com) ChemSpider serving up data for the SpectralGame (www.spectralgame.com) SpectraSchool for learning about interpreting spectra. Not just NMR (http://spectraschool.rsc.org/ ) MORE planned…
  • 4. ChemSpider 27 million chemicals with associated data…
  • 5. Cholesterol on ChemSpider
  • 6. ChemSpider : Spectra Linked
  • 7. Spectra Linked
  • 8. Spectra Linked
  • 9. Sources of Spectra Sourced from online sources with permission Private collections The MAJORITY deposited by ChemSpider users
  • 10. Spectral Uploading Locate the structure of interest and deposit spectrum
  • 11. Spectral Uploading Various types of NMR spectra supported
  • 12. Regular Updates
  • 13. Multiple Spectra for One Structure
  • 14. ChemSpider ID 24528095 H1 NMR
  • 15. ChemSpider ID 24528095 C13 NMR
  • 16. ChemSpider ID 24528095 HHCOSY
  • 17. ChemSpider ID 24528095 HSQC
  • 18. ChemSpider ID 24528095 HMBC
  • 19. Full C13 assignment uploaded
  • 20. Available Spectrahttp://www.chemspider.com/spectra.aspx
  • 21. Embedding Data
  • 22. Learn Chemistry Wiki
  • 23. Learn Chemistry Wiki Substances
  • 24. Learn Chemistry Wiki Substances
  • 25. Learn Chemistry Wiki Substances
  • 26. Learn Chemistry Wiki Substances
  • 27. Learn Chemistry Wiki Substances
  • 28. NMRShiftDB: http://www.ebi.ac.uk/nmrshiftdb/
  • 29. Learn Chemistry Wiki Substances
  • 30. Where do data come from? ChemSpider users deposit data Some contributions from NIST Chemical vendors are starting to provide data. Synthonix are one of our major contributors (www.synthonix.com)
  • 31. Web Services
  • 32. www.SpectralGame.comhttp://www.jcheminf.com/content/1/1/9
  • 33. Spectral Game
  • 34. Increasing Complexity
  • 35. SpectralGame in the hand
  • 36. ChemDoodle Web Components An open-source and free HTML5 toolkit. For desktop and mobile browsers.
  • 37. SpectraSchool http://spectraschool.rsc.org/
  • 38. SpectraSchool Videos
  • 39. SpectraSchool
  • 40. SpectraSchool
  • 41. Identify Mode
  • 42. Spectroscopy in a Suitcase
  • 43. Invitations Spectral data are welcomed from associated syntheses, lab experiments etc Upload structures, spectra, analyses etc to ChemSpider to share with the community Use www.SpectralGame.com and encourage your students
  • 44. Coming Soon Storage and display of ASSIGNED spectra
  • 45. Acknowledgments Alexey Pshenichnov, University of Leicester and Richard Oakley – SpectraSchool Aileen Day and Martin Walker – Learn Chemistry Wiki Jean-Claude Bradley, Andrew Lang, Robert Lancashire, Kevin Thiesen (ChemDoodle) – SpectralGame Gary Allred and Chi Wang – Synthonix Data Ryan Sasaki, Sergey Golotvin, Pranas Japertas ACD/Labs –Bulk data processing and Display Widget Depositors of data – there are many!
  • 46. Thank youEmail: williamsa@rsc.orgTwitter: ChemConnectorPersonal Blog: www.chemconnector.comSLIDES: www.slideshare.net/AntonyWilliams