Improving Scientific Information Sharing 
by Fostering Reuse of Presentation Material
!
by Bernadette Hyland, David Wood, L...
What we’re currently doing
earns us a “No Pass“
• We spend considerable time preparing papers &
presentations

• Yet impor...
In March, a cancer researcher at Amgen
pharmaceutical company, based in Thousand Oaks,
California, reported that its scien...
Today’s Data on the Web
Linked Data on the Web
Person

Michael
a

Galway Airport

first name

Hausenblas

last name

collector
collected at
collect...
http://3roundstones.com
Callimachus
Enterprise
A data integration platform

Callimachus Enterprise supports distributed, in-browser
workflow creati...
Helping organizations surface data and
collaborate either behind the firewall or
securely on the cloud.
!

Used by the Fort...
Our approach …
Callimachus
Enterprise
Social features:!
•

•
•

OpenAnnotation tags
and categories for all
resources.
Timeline of user
ac...
Document, Provenance &
Annotation Metadata in RDF Turtle
!
# Document!
</p/luke/3rs-improving-scientific-information-shari...
You Can Upload:
•

PDF files (presentations or documents)

•

Text documents

•

Image files (.png, .jpg, .gif, .svg)

•

HT...
Get Callimachus 1.3
callimachusproject.org

3roundstones.com

Open Source

Commercially
supported
Use a Linked Data
approach to	


share scientific
findings

Bernadette Hyland

bhyland@3RoundStones.com
@BernHyland Direct +...
Structured data on the Web
David Wood
Marsha Zaidman
Luke Ruth
WITH Michael Hausenblas

FOREWORD BY Tim Berners-Lee

MANNI...
shared innovation™

This work is Copyright © 2011-2014 3 Round Stones Inc.
It is licensed under the Creative Commons Attri...
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014
Upcoming SlideShare
Loading in …5
×

Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014

813 views
699 views

Published on

Most scientific developments are recorded in published papers and communicated via presentations. Scientific findings are presented within organizations, at conferences, via Webinars and other fora. Yet after delivery to an audience, important information is often left to wither on hard drives, document management systems and even the Web. Accessing the underlying data for scientific findings has been the Achilles Heel of researchers due to closed and proprietary systems. This presentation shows an alternative to sharing scientific information using a Linked Data approach.

Published in: Health & Medicine
0 Comments
0 Likes
Statistics
Notes
  • Be the first to comment

  • Be the first to like this

No Downloads
Views
Total views
813
On SlideShare
0
From Embeds
0
Number of Embeds
72
Actions
Shares
0
Downloads
4
Comments
0
Likes
0
Embeds 0
No embeds

No notes for slide

Improving Scientific Information Sharing by Fostering Reuse - Presentation at CSHALS 2014 on 28-February-2014

  1. 1. Improving Scientific Information Sharing by Fostering Reuse of Presentation Material ! by Bernadette Hyland, David Wood, Luke Ruth, James Leigh Conference for Semantics in Healthcare & Life Sciences Boston MA http://www.iscb.org/cshals2014 Bernadette Hyland, CEO & co-founder @BernHyland This Presentation http://www.slideshare.net/ 3RoundStones
  2. 2. What we’re currently doing earns us a “No Pass“ • We spend considerable time preparing papers & presentations • Yet important ideas as presentations & papers end up in a CMS or DMS without the data • Data assessment and verification very challenging • My ideas show up in presentations … sometimes with attribution … sometimes not • I have no visibility on who is leveraging my content
  3. 3. In March, a cancer researcher at Amgen pharmaceutical company, based in Thousand Oaks, California, reported that its scientists had repeated experiments in 53 'landmark' papers, but managed to confirm findings from only six of the studies. ….. An internal survey at Bayer HealthCare, headquartered in Leverkusen, Germany, found that inconsistencies between published findings and the company’s own results caused delays or cancellations in about two-thirds of projects.
  4. 4. Today’s Data on the Web
  5. 5. Linked Data on the Web Person Michael a Galway Airport first name Hausenblas last name collector collected at collected by my data measurement ... a measurement date 2011-01-01 or value units of measure 0 degrees Centigrade
  6. 6. http://3roundstones.com
  7. 7. Callimachus Enterprise A data integration platform Callimachus Enterprise supports distributed, in-browser workflow creation, editing and publication using the Linked Data model.
  8. 8. Helping organizations surface data and collaborate either behind the firewall or securely on the cloud. ! Used by the Fortune 2000 and US Government agencies to collect, annotate and reuse data on the public Internet and within the enterprise.
  9. 9. Our approach …
  10. 10. Callimachus Enterprise Social features:! • • • OpenAnnotation tags and categories for all resources. Timeline of user activities. Exposed as Linked Data User Profile Document management:! • • • Documents & folders associated with user profiles. Folders can contain data, documents and Callimachus applications. In-browser editing tools are available for many document types.
  11. 11. Document, Provenance & Annotation Metadata in RDF Turtle ! # Document! </p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> a </callimachus/ enterprise/1.3/types/PortableDocument>, foaf:Document ! ! ;!ctrl:hasPage </p/luke/3rs-improving-scientific-informationsharing-20131213.pdf#page=1>! ! ; dcterms:created "2013-12-13T21:57:44.000Z"^^xsd:dateTime! ! ; dcterms:title "3RS Improving Scientific Information Sharing 20131212"! ! ; foaf:depiction </p/luke/3rs-improving-scientific-informationsharing-20131213.pdf?thumbnail=page%3D1>! ! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/t14427d585ddx793#provenance>! ! ; rdfs:label "3RS Improving Scientific Information Sharing 20131213" .! ! # User! ! <p/luke>! calli:hasComponent <p/luke/3rs-improving-scientific-information-sharing-20131213.pdf>! ; calli:hasComponent <p/luke/ann1392238163872> .! ! ! # Annotations for the Document! </p/luke/ann1392238163872> a <callimachus/enterprise/1.3/types/Annotation>, oa:Annotation ! ! ;!oa:annotatedAt "2014-02-12T20:49:51.651Z"^^xsd:DateTime! ! ; oa:annotatedBy </p/luke> ! ! ; oa:hasBody </callimachus/enterprise/1.3/concepts/categories/education>! ! ; oa:hasBody </p/luke/ann1392238163872#body0>! ! ; oa:hasTarget </p/luke/3rs-improving-scientific-information-sharing-20131213.pdf> ! ! ; oa:motivatedBy oa:tagging ! ! ; prov:wasGeneratedBy </callimachus/changes/2014/02/12/ t14427d585ddx2510#provenance> .!
  12. 12. You Can Upload: • PDF files (presentations or documents) • Text documents • Image files (.png, .jpg, .gif, .svg) • HTML files, CSS stylesheets, JavaScript files • RDF data! (Turtle, N3, RDF/XML) Developers can also create Linked Data applications!
  13. 13. Get Callimachus 1.3 callimachusproject.org 3roundstones.com Open Source Commercially supported
  14. 14. Use a Linked Data approach to share scientific findings Bernadette Hyland bhyland@3RoundStones.com @BernHyland Direct +1-571-331-3758
  15. 15. Structured data on the Web David Wood Marsha Zaidman Luke Ruth WITH Michael Hausenblas FOREWORD BY Tim Berners-Lee MANNING http://LinkedDataDeveloper.com
  16. 16. shared innovation™ This work is Copyright © 2011-2014 3 Round Stones Inc. It is licensed under the Creative Commons Attribution 3.0 Unported License
 Full details at: http://creativecommons.org/licenses/by/3.0/ You are free: to Share — to copy, distribute and transmit the work to Remix — to adapt the work Under the following conditions: Attribution. You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Share Alike. If you alter, transform, or build upon this work, you may distribute the resulting work only under the same or similar license to this one.

×